BAC Information

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BAC

Clone NameB6Ng01-142M17
Chromosome2 (Build37)
Map Location 37,632,776 - 37,778,516
singlet/doubletdoublet
Overlap geneDennd1a
Upstream geneOlfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneLOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142M17.bB6Ng01-142M17.g
ACCDH940900DH940901
length1,0951,049
definitionDH940900|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M17, 5' end.DH940901|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,777,403 - 37,778,516)(37,632,776 - 37,633,841)
sequence
gaattcaaggccagcctggataatagaagaaagatcctacacatacccaa
aataaattatatccagccttcaaaacttatgtattccaggaaggcatagg
taggagcaatgaaagtgagtaaggtatgctttaaatcgcaaaatgtaccc
aaaaaagcaaatggagtaagagactggcaaaaatgcccaggtgatgaggt
agcggctgggagagaaactggaacctagtgtgtctgtgtctacgatgttg
caaatgctgcttgtggtcttggtgatggtttccagagcctggcatctgtg
ccctcctgtggagtgagccttcagtccgccacttggaatgttattgtttg
cctctgtaatatttgtgtcactgttgatggtcaaaccttgcaatgccagg
cattactgtagtgcacagagttcaaagctgggttggatgttgatgacctt
tctccaacatcctacataagctgcctctggcattatgaaagccatcaggg
aagaagcttcctatagagtaccagcttgatttttccgtgtcttgtgaccc
gagtaatatataaaaatttcaaaaacacaagttgccctagtttgctttct
attgctgtacttaatgccatgaccaaaagtatcttagtgaggaagggttt
atctatcccagtcatagctgatgattgagagaagtcagggcagagactca
agaacaggagccatggaagatcactgcttgcttactgcttgctcgccatg
acttgcccagcctactttcttaccaaggaccaccctgttcagggcggtcc
cacaatgggctgggacctcctagtaatcaagtaatcaaccagtagtaaag
aaaatgccagtctgatagagcagttcctcagttgagagtttattttcaga
tatgtctaggtttgtgtcaagttgacaaaatcagtccaaaattaatgctg
gtagatcttttctgtgcccttatacgtagaagtcatttttctggctagaa
actgtggcttatacttccttgagtattgtctagtgtcttctaatctggca
atgtgtaaatctaggatcatttctttcttctcaggcaatgtcttc
gaattcctactggggggtctggaggacgctttggcttggtcactatagtt
acgagggcagtagggagggcccggcttcccctgcaataggtgaaccccac
cagtggcattccccctgcctgcctacaaagccgttattgcctcttctctg
tggaaagggggaggatgaggaccctgggtacagcgaggacctgttttagg
gaggaaaccaaatgaaggttgaggagggaagggacctagaagaagctggt
acctgaggcaaatgagggtggagaaaccaggcaactccaggctgtctgta
cattagggcgtgaggttctgggctgtgcactttggatctgttccacatgc
agtacacagatgcccatggcagctgcacagatgtgtggcagggactaggg
tacatactacaacaggacaggtgtccacaggcacatgccaggtctcccct
gtgagctcactggtgaacttgctaatgaacctactgtgtatcatcatata
catagcacatggctgcattcacccactaggtacacaccagcaggcctgca
ttgacttatatgcacttacacacatatggtctgtgagattggcaaacagt
ggtgtatatttccccagaactccaacaggctctcaggggccattgccccg
ggaattctgtgtgcagagtccatctctggggatccctgaagctagagttg
ggggctctacaagcacgattacccagagctgactgagcaaagggcggtgc
tagggactttgtgacttgaaagctaatttccatcccagaggagatgaaag
ttctggaccagacccgatgccctccctgccaggctctgagctgggccctc
catccagccactccacagcagaggattgctggttgctatggagaggatag
catctgactacatggaacatgtcgagttgttccacccccacccttcctga
acacccagggagtgcagtgcacaaaggggcagcagtctttctcaaacctg
cccctcctccaacttaagagtgggcggtaggaagcacagggatctgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37777403_37778516
seq2: B6Ng01-142M17.b_49_1143 (reverse)

seq1  GAAGAACATGTGCCTGAAGAAAGAAAGAAAATTGATTCCCTTAGGATTTT  50
      |||| |||| |||||||   ||||||||||  ||||  |||   ||||| 
seq2  GAAG-ACAT-TGCCTGA--GAAGAAAGAAA--TGAT--CCT--AGATTT-  39

seq1  TAACACATTTGCCAGATTTAGAGACACTTAGACAATACTCAAGGAAGTAT  100
        ||||| ||||||||||   |||||| ||||||||||||||||||||||
seq2  --ACACA-TTGCCAGATTAGAAGACAC-TAGACAATACTCAAGGAAGTAT  85

seq1  AAGCCACAGTTTCTAGCCAGAAAAATGACTTCTACGTATAAAGGGCACAG  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGCCACAGTTTCTAGCCAGAAAAATGACTTCTACGTAT-AAGGGCACAG  134

seq1  AAAAGATCTTACCAGCATTTAATTTTGGACTGATTTTGTCAACTTGACAC  200
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AAAAGATC-TACCAGCA-TTAATTTTGGACTGATTTTGTCAACTTGACAC  182

seq1  AAACCTAGACATATCTGAAAATAAACTCTCAACTGAGGAACTGCTTCTAT  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACCTAGACATATCTGAAAATAAACTCTCAACTGAGGAACTGC-TCTAT  231

seq1  CAGACTGGCATTTTCTTTACTACTGGTTGATTACTTGATTACTAGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGCATTTTCTTTACTACTGGTTGATTACTTGATTACTAGGAGGT  281

seq1  CCCAGCCCATTGTGGGACCGCCCTGAACAGGGTGGTCCTTGGTAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCATTGTGGGACCGCCCTGAACAGGGTGGTCCTTGGTAAGAAAG  331

seq1  TAGGCTGGGCAAGTCATGGCGAGCAAGCAGTAAGCAAGCAGTGATCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGGGCAAGTCATGGCGAGCAAGCAGTAAGCAAGCAGTGATCTTCC  381

seq1  ATGGCTCCTGTTCTTGAGTCTCTGCCCTGACTTCTCTCAATCATCAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCTGTTCTTGAGTCTCTGCCCTGACTTCTCTCAATCATCAGCTA  431

seq1  TGACTGGGATAGATAAACCCTTCCTCACTAAGATACTTTTGGTCATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGATAGATAAACCCTTCCTCACTAAGATACTTTTGGTCATGGCA  481

seq1  TTAAGTACAGCAATAGAAAGCAAACTAGGGCAACTTGTGTTTTTGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTACAGCAATAGAAAGCAAACTAGGGCAACTTGTGTTTTTGAAATT  531

seq1  TTTATATATTACTCGGGTCACAAGACACGGAAAAATCAAGCTGGTACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATTACTCGGGTCACAAGACACGGAAAAATCAAGCTGGTACTCT  581

seq1  ATAGGAAGCTTCTTCCCTGATGGCTTTCATAATGCCAGAGGCAGCTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGCTTCTTCCCTGATGGCTTTCATAATGCCAGAGGCAGCTTATG  631

seq1  TAGGATGTTGGAGAAAGGTCATCAACATCCAACCCAGCTTTGAACTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTTGGAGAAAGGTCATCAACATCCAACCCAGCTTTGAACTCTGT  681

seq1  GCACTACAGTAATGCCTGGCATTGCAAGGTTTGACCATCAACAGTGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACAGTAATGCCTGGCATTGCAAGGTTTGACCATCAACAGTGACAC  731

seq1  AAATATTACAGAGGCAAACAATAACATTCCAAGTGGCGGACTGAAGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTACAGAGGCAAACAATAACATTCCAAGTGGCGGACTGAAGGCTC  781

seq1  ACTCCACAGGAGGGCACAGATGCCAGGCTCTGGAAACCATCACCAAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACAGGAGGGCACAGATGCCAGGCTCTGGAAACCATCACCAAGACC  831

seq1  ACAAGCAGCATTTGCAACATCGTAGACACAGACACACTAGGTTCCAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGCATTTGCAACATCGTAGACACAGACACACTAGGTTCCAGTTT  881

seq1  CTCTCCCAGCCGCTACCTCATCACCTGGGCATTTTTGCCAGTCTCTTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAGCCGCTACCTCATCACCTGGGCATTTTTGCCAGTCTCTTACT  931

seq1  CCATTTGCTTTTTTGGGTACATTTTGCGATTTAAAGCATACCTTACTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCTTTTTTGGGTACATTTTGCGATTTAAAGCATACCTTACTCAC  981

seq1  TTTCATTGCTCCTACCTATGCCTTCCTGGAATACATAAGTTTTGAAGGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGCTCCTACCTATGCCTTCCTGGAATACATAAGTTTTGAAGGCT  1031

seq1  GGATATAATTTATTTTGGGTATGTGTAGGATCTTTCTTCTATTATCCAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAATTTATTTTGGGTATGTGTAGGATCTTTCTTCTATTATCCAGG  1081

seq1  CTGGCCTTGAATTC  1114
      ||||||||||||||
seq2  CTGGCCTTGAATTC  1095

seq1: chr2_37632776_37633841
seq2: B6Ng01-142M17.g_69_1117

seq1  GAATTCCTACTGGGGGGTCTGGAGGACGCTTTGGCTTGGTCACTATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGGGGGGTCTGGAGGACGCTTTGGCTTGGTCACTATAGTT  50

seq1  ACGAGGGCAGTAGGGAGGGCCCGGCTTCCCCTGCAATAGGTGAACCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGCAGTAGGGAGGGCCCGGCTTCCCCTGCAATAGGTGAACCCCAC  100

seq1  CAGTGGCATTCCCCCTGCCTGCCTACAAAGCCGTTATTGCCTCTTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCATTCCCCCTGCCTGCCTACAAAGCCGTTATTGCCTCTTCTCTG  150

seq1  TGGAAAGGGGGAGGATGAGGACCCTGGGTACAGCGAGGACCTGTTTTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGGGAGGATGAGGACCCTGGGTACAGCGAGGACCTGTTTTAGG  200

seq1  GAGGAAACCAAATGAAGGTTGAGGAGGGAAGGGACCTAGAAGAAGCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACCAAATGAAGGTTGAGGAGGGAAGGGACCTAGAAGAAGCTGGT  250

seq1  ACCTGAGGCAAATGAGGGTGGAGAAACCAGGCAACTCCAGGCTGTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAGGCAAATGAGGGTGGAGAAACCAGGCAACTCCAGGCTGTCTGTA  300

seq1  CATTAGGGCGTGAGGTTCTGGGCTGTGCACTTTGGATCTGTTCCACATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGGCGTGAGGTTCTGGGCTGTGCACTTTGGATCTGTTCCACATGC  350

seq1  AGTACACAGATGCCCATGGCAGCTGCACAGATGTGTGGCAGGGACTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACAGATGCCCATGGCAGCTGCACAGATGTGTGGCAGGGACTAGGG  400

seq1  TACATACTACAACAGGACAGGTGTCCACAGGCACATGCCAGGTCTCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACTACAACAGGACAGGTGTCCACAGGCACATGCCAGGTCTCCCCT  450

seq1  GTGAGCTCACTGGTGAACTTGCTAATGAACCTACTGTGTATCATCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCACTGGTGAACTTGCTAATGAACCTACTGTGTATCATCATATA  500

seq1  CATAGCACATGGCTGCATTCACCCACTAGGTACACACCAGCAGGCCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACATGGCTGCATTCACCCACTAGGTACACACCAGCAGGCCTGCA  550

seq1  TTGACTTATATGCACTTACACACATATGGTCTGTGAGATTGGCAAACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTATATGCACTTACACACATATGGTCTGTGAGATTGGCAAACAGT  600

seq1  GGTGTATATTTCCCCAGAACTCCAACAGGCTCTCAGGGGCCATTGCCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATATTTCCCCAGAACTCCAACAGGCTCTCAGGGGCCATTGCCCCG  650

seq1  GGAATTCTGTGTGCAGAGTCCATCTCTGGGGATCCCTGAAGCTAGAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGTGTGCAGAGTCCATCTCTGGGGATCCCTGAAGCTAGAGTTG  700

seq1  GGGGCTCTACAAGCACGATTACCCAGAGCTGACTGAGCAAAGGGCGGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTACAAGCACGATTACCCAGAGCTGACTGAGCAAAGGGCGGTGC  750

seq1  TAGGGACTTTGTGACTTGAAAGCTAATTTCCATCCCAGAGGAGATGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACTTTGTGACTTGAAAGCTAATTTCCATCCCAGAGGAGATGAAAG  800

seq1  TTCTGGACCAGACCCGATGCCCTCCCTGCCAGGCTCTGAGCTGGGCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTCTGGACCAGACCCGATGCCCTCCCTGCCAGGCTCTGAGCTGGG-CCCT  849

seq1  CCATCCCAGCCACTCCACAGCAGAGGATTGCTGGTTGCTATGGAGAGGAT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAT-CCAGCCACTCCACAGCAGAGGATTGCTGGTTGCTATGGAGAGGAT  898

seq1  AAGGCATCTTGGACTACAATGGAACATGTCGAGTTGTTCCCACCCCCACC  950
      |  ||||||  |||||| |||||||||||||||||||| |||||||||||
seq2  A--GCATCT--GACTAC-ATGGAACATGTCGAGTTGTT-CCACCCCCACC  942

seq1  CCTTCCCTGAACACCCAGGGAGTGCAGTGCACAAAGGGGCAGCCAGTCTT  1000
      |  | ||||||||||||||||||||||||||||||||||||| |||||||
seq2  C--TTCCTGAACACCCAGGGAGTGCAGTGCACAAAGGGGCAG-CAGTCTT  989

seq1  CCCCAAACCTGGCCCCTCCTCCAACTTAAGAGGTGGGGCGGTAGGAGAGC  1050
       | ||||||| |||||||||||||||||||||   ||||||||||| |||
seq2  TCTCAAACCT-GCCCCTCCTCCAACTTAAGAG--TGGGCGGTAGGA-AGC  1035

seq1  AACAGGGACTCTGTAT  1066
       ||||||| |||||||
seq2  -ACAGGGA-TCTGTAT  1049