BAC Information

Click to search

BAC

Clone NameB6Ng01-143A04
Chromosome2 (Build37)
Map Location 127,319,737 - 127,479,286
singlet/doubletdoublet
Overlap geneKcnip3, Prom2, Zfp661, Mrps5, Mal
Upstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a
Downstream geneLOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424, LOC100043729, LOC383791, LOC100043730, Gm355, Anapc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A04.bB6Ng01-143A04.g
ACCDH941061DH941062
length1,136743
definitionDH941061|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A04, 5' end.DH941062|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,478,125 - 127,479,286)(127,319,737 - 127,320,479)
sequence
gaattccaaaagtggctgttactacacccctgcacacctcagacgtatgg
ggaaggaggcagggccagtccctggtggcagcaggtacttgttaggtaca
tatctaggggtggaggcaggatgaggggccatccggaattggtttgcagt
attgactcctacattgagcggatctgttaattattaaaatcatagctttt
gtgagtttcagaattaagtagaactttttattgtctgaaaatgactagac
aagtcctagtttttcgcctggctggggacgaaccagagccttgattgggt
cctgaaatgatggagcagttttctgagtgcatcaagcagtcaacccatca
gagcccaagagatgtagaatcccagaccctgcatttgcaggtccaggtag
aaactgagaaagagagggagccacttgcctgggttgggacaactgtcttc
ttacaccaaaagtgttctggagcagtaatccaacccacttggcagccctc
tctcacccactggggaatgcagggacatctcagagtcacttcggagctgc
tggttgcaacaccaccactacataaaaatattctccatgggttcttagtc
actgcatccaataacgataagccccagactgaccactgactcagtgggtg
tgaccatatgtaatccaggccaccttttaagacctttttggagagtggat
agaagaatggatatcttagaggcaggagtgaggttcccaggtgtcctgaa
gttctcacagcgccatggcatggacactctctgtttgaggggaaatttcc
ttagggagtaggacagaaagaggtgctaagactcttccaggctatgtggt
gttgtgtgccctgtgttgcaggtcctctctgaactttcagaggggcatgc
tgccaaatttggcccagcattctactctctcctctcttctaaaggcagat
tatagaggatctggggagaggattctggctttgagagtgacttttcagtt
tttcaggcagtggctgctttgatcaggagtggtaactcagagccagcagt
caccgagcacttccctacctggaagcttcagcaggcaggagagggccaca
aactgaatgctggaaggagaaggaaaggtcagctct
gaattctttatgagtatctgttgcttttgctgccttgagacaggctcttg
ctacatagcacaggttgactttgaacctgctgtgtagctcgtcttggccc
tgaactggttgctgatttttctgtctcagactcctaagtattgagactac
agatgttggttatcacaccagaatcttagattctttttttttttcttctt
catatttttggctttaccttttagtacagaattgggtagaatctctaggc
tgttggagtcaagtccattaatccactttgcatggtgatcatttagcttg
tttatgaaattttctatatttcaacaactagactggcacttccaatattg
tagactttttttgtaatgcatataatgtgcttcaaggtctctagggatat
tatatttatttcagtctatattattgtatttattctacattcttttttct
cagtgactgcctctatttgtaccatgtctttatctggataaacttaagtt
gtattgatgctgttttaagacagggtctctagtccaaacttatttgacac
ccactatgtagaccaggctagccttcatttcatttagcctcccaaatgct
aggcttatgggtgtgcctttaatgacttttgatatgggtttccctgggtg
ttggtagcttctagatacatgtctgagccctgttataaaaatggccatgg
ctctgatgtggcagagggtgtgagggaagggtggatgggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_127478125_127479286
seq2: B6Ng01-143A04.b_47_1182 (reverse)

seq1  AGAGCTGACCTTTCTCTCTCCTTCCAGCATTTCAGTTTGTGTGCCCTCCT  50
      ||||||||||||||  ||||||||||||| ||||||||||| ||||||  
seq2  AGAGCTGACCTTTCCTTCTCCTTCCAGCA-TTCAGTTTGTG-GCCCTC--  46

seq1  TCCCTGCACTGGCTGGAGGCTCTCAGGTAGGGAAGGTGCCTCTGTGACCC  100
        ||||| || ||| || |||  ||||||||||| ||| ||| ||||  |
seq2  -TCCTGC-CT-GCT-GAAGCTTCCAGGTAGGGAA-GTG-CTCGGTGA--C  88

seq1  TGCTGGGCTCTGAGTTACCAACTCCTGATCAAAGCAGGCCACTGGCCCTT  150
      |||| |||||||||||||| |||||||||||||||| |||||||   | |
seq2  TGCT-GGCTCTGAGTTACC-ACTCCTGATCAAAGCA-GCCACTG---CCT  132

seq1  GAAAAACTGGAAAAGTCACTTCTCAAAGCCAAGAATTCCTCTCCCCAGAT  200
      |||||||| |||||||||| |||||||||| |||| ||||||||||||||
seq2  GAAAAACT-GAAAAGTCAC-TCTCAAAGCC-AGAA-TCCTCTCCCCAGAT  178

seq1  -CTCTATAATTCTGCCTTTAGAAGAGAGGAGGAGAGTAGAATGCTGGGGC  249
       |||||||| |||||||||||||||||||| |||||||||||||| ||||
seq2  CCTCTATAA-TCTGCCTTTAGAAGAGAGGA-GAGAGTAGAATGCT-GGGC  225

seq1  CAAATTTGGCAGCATGCCCCTCTGGAAAGTTCAGAGAGGACCCTGCAACA  299
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CAAATTTGGCAGCATGCCCCTCT-GAAAGTTCAGAGAGGA-CCTGCAACA  273

seq1  CAGGGCACACAACACCACATAGCCTGGAAGAGTCTTAGCACCTCTTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACACAACACCACATAGCCTGGAAGAGTCTTAGCACCTCTTTCTG  323

seq1  TCCTACTCCCTAAGGAAATTTCCCCTCAAACAGAGAGTGTCCATGCCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTCCCTAAGGAAATTTCCCCTCAAACAGAGAGTGTCCATGCCATG  373

seq1  GCGCTGTGAGAACTTCAGGACACCTGGGAACCTCACTCCTGCCTCTAAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGTGAGAACTTCAGGACACCTGGGAACCTCACTCCTGCCTCTAAGA  423

seq1  TATCCATTCTTCTATCCACTCTCCAAAAAGGTCTTAAAAGGTGGCCTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTCTTCTATCCACTCTCCAAAAAGGTCTTAAAAGGTGGCCTGGA  473

seq1  TTACATATGGTCACACCCACTGAGTCAGTGGTCAGTCTGGGGCTTATCGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATGGTCACACCCACTGAGTCAGTGGTCAGTCTGGGGCTTATCGT  523

seq1  TATTGGATGCAGTGACTAAGAACCCATGGAGAATATTTTTATGTAGTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGCAGTGACTAAGAACCCATGGAGAATATTTTTATGTAGTGGT  573

seq1  GGTGTTGCAACCAGCAGCTCCGAAGTGACTCTGAGATGTCCCTGCATTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGCAACCAGCAGCTCCGAAGTGACTCTGAGATGTCCCTGCATTCC  623

seq1  CCAGTGGGTGAGAGAGGGCTGCCAAGTGGGTTGGATTACTGCTCCAGAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGTGAGAGAGGGCTGCCAAGTGGGTTGGATTACTGCTCCAGAAC  673

seq1  ACTTTTGGTGTAAGAAGACAGTTGTCCCAACCCAGGCAAGTGGCTCCCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGTGTAAGAAGACAGTTGTCCCAACCCAGGCAAGTGGCTCCCTC  723

seq1  TCTTTCTCAGTTTCTACCTGGACCTGCAAATGCAGGGTCTGGGATTCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCAGTTTCTACCTGGACCTGCAAATGCAGGGTCTGGGATTCTAC  773

seq1  ATCTCTTGGGCTCTGATGGGTTGACTGCTTGATGCACTCAGAAAACTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTGGGCTCTGATGGGTTGACTGCTTGATGCACTCAGAAAACTGCT  823

seq1  CCATCATTTCAGGACCCAATCAAGGCTCTGGTTCGTCCCCAGCCAGGCGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTTCAGGACCCAATCAAGGCTCTGGTTCGTCCCCAGCCAGGCGA  873

seq1  AAAACTAGGACTTGTCTAGTCATTTTCAGACAATAAAAAGTTCTACTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGGACTTGTCTAGTCATTTTCAGACAATAAAAAGTTCTACTTAA  923

seq1  TTCTGAAACTCACAAAAGCTATGATTTTAATAATTAACAGATCCGCTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACTCACAAAAGCTATGATTTTAATAATTAACAGATCCGCTCAA  973

seq1  TGTAGGAGTCAATACTGCAAACCAATTCCGGATGGCCCCTCATCCTGCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGTCAATACTGCAAACCAATTCCGGATGGCCCCTCATCCTGCCT  1023

seq1  CCACCCCTAGATATGTACCTAACAAGTACCTGCTGCCACCAGGGACTGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTAGATATGTACCTAACAAGTACCTGCTGCCACCAGGGACTGGC  1073

seq1  CCTGCCTCCTTCCCCATACGTCTGAGGTGTGCAGGGGTGTAGTAACAGCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCTTCCCCATACGTCTGAGGTGTGCAGGGGTGTAGTAACAGCC  1123

seq1  ACTTTTGGAATTC  1162
      |||||||||||||
seq2  ACTTTTGGAATTC  1136

seq1: chr2_127319737_127320479
seq2: B6Ng01-143A04.g_69_811

seq1  GAATTCTTTATGAGTATCTGTTGCTTTTGCTGCCTTGAGACAGGCTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGAGTATCTGTTGCTTTTGCTGCCTTGAGACAGGCTCTTG  50

seq1  CTACATAGCACAGGTTGACTTTGAACCTGCTGTGTAGCTCGTCTTGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGCACAGGTTGACTTTGAACCTGCTGTGTAGCTCGTCTTGGCCC  100

seq1  TGAACTGGTTGCTGATTTTTCTGTCTCAGACTCCTAAGTATTGAGACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGTTGCTGATTTTTCTGTCTCAGACTCCTAAGTATTGAGACTAC  150

seq1  AGATGTTGGTTATCACACCAGAATCTTAGATTCTTTTTTTTTTTCTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGGTTATCACACCAGAATCTTAGATTCTTTTTTTTTTTCTTCTT  200

seq1  CATATTTTTGGCTTTACCTTTTAGTACAGAATTGGGTAGAATCTCTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTTGGCTTTACCTTTTAGTACAGAATTGGGTAGAATCTCTAGGC  250

seq1  TGTTGGAGTCAAGTCCATTAATCCACTTTGCATGGTGATCATTTAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGTCAAGTCCATTAATCCACTTTGCATGGTGATCATTTAGCTTG  300

seq1  TTTATGAAATTTTCTATATTTCAACAACTAGACTGGCACTTCCAATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAATTTTCTATATTTCAACAACTAGACTGGCACTTCCAATATTG  350

seq1  TAGACTTTTTTTGTAATGCATATAATGTGCTTCAAGGTCTCTAGGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTTTTTGTAATGCATATAATGTGCTTCAAGGTCTCTAGGGATAT  400

seq1  TATATTTATTTCAGTCTATATTATTGTATTTATTCTACATTCTTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATTTCAGTCTATATTATTGTATTTATTCTACATTCTTTTTTCT  450

seq1  CAGTGACTGCCTCTATTTGTACCATGTCTTTATCTGGATAAACTTAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTGCCTCTATTTGTACCATGTCTTTATCTGGATAAACTTAAGTT  500

seq1  GTATTGATGCTGTTTTAAGACAGGGTCTCTAGTCCAAACTTATTTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATGCTGTTTTAAGACAGGGTCTCTAGTCCAAACTTATTTGACAC  550

seq1  CCACTATGTAGACCAGGCTAGCCTTCATTTCATTTAGCCTCCCAAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATGTAGACCAGGCTAGCCTTCATTTCATTTAGCCTCCCAAATGCT  600

seq1  AGGCTTATGGGTGTGCCTTTAATGACTTTTGATATGGGTTTCCCTGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATGGGTGTGCCTTTAATGACTTTTGATATGGGTTTCCCTGGGTG  650

seq1  TTGGTAGCTTCTAGATACATGTCTGAGCCCTGTTATAAAAATGGCCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGCTTCTAGATACATGTCTGAGCCCTGTTATAAAAATGGCCATGG  700

seq1  CTCTGATGTGGCAGAGGGTGTGAGGGAAGGGTGGATGGGTGAT  743
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGTGGCAGAGGGTGTGAGGGAAGGGTGGATGGGTGAT  743