BAC Information

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BAC

Clone NameB6Ng01-143A21
Chromosome2 (Build37)
Map Location 30,334,732 - 30,471,992
singlet/doubletdoublet
Overlap geneCstad
Upstream geneCrsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l
Downstream geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A21.bB6Ng01-143A21.g
ACCDH941095DH941096
length1,173928
definitionDH941095|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A21, 5' end.DH941096|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,334,732 - 30,335,914)(30,471,063 - 30,471,992)
sequence
gaattcagtgtagacctttgtccctgcacagctctgctgggagtttctaa
ggctcttaggacagaaccttcgaacttcgctttcgtttgggtgctggagg
ctgctgaggttgcattgctcctcatccctgcaccagataggtgagaaccc
cgggtgccactgtgggtgctggctttgccaagagctgcttttcagtaatt
ctcaaagcattcgaatgtagtgggcagtgttgcagacccatttgagagcc
aagtggattgaggcccaaggaaacagggtcccaagcctggtatagtggct
tatgcctgtcatcccagtacctgcggtgcagacaagaggggcttggacta
caggctgatctcaaggacaacatcagtacatgaaaccaaatcaaactaaa
cgacccagagtgacactgggtgtggtggctcccacctgtaattctagtac
ctgggaggccagcctgtgctgtatacataattagtaccaggtcagctggg
atggcatagcagtgccttggttcaaaaagcaggagtgggccaggtgattg
tggccacatcccattaatcccagttctcgggaggcagaggcaggtggatt
tctgtgtatccaagcctgggctacacggagaaaccttgtctcaaaaaaca
acaaaaagggagtaggggaatagatgagtggacagaccatagtagggaaa
taggctgatggacagaccataccctgacatggctttttgagtaaaggcac
ttgacaacccaagtcccgttcagaactcacacagaagtggaaggagagaa
cggttgtcctctgtgctccacatgtgtacctgagctgggaagacatggcc
tttacccacccctgccctgccaccttctgtcttaggtcttgtgcatacct
attggttctttcctgtatattaagtgcctactgtttactgaactctggtc
agctcccagagcatgggagtctgctgtcagaactgtccttaccttttctt
cagtgaacaaagaagataagtggggagaaaacgtgtactggacagcttct
gagtatggcggcagtcctgtgaatgaactggaggtgggggtgacaagagg
ctctaagagtgaaaatccagctggttaattaacatcagcattgaaccttg
tcaagccagcaggactgccttga
gaattccctggctgcagactgtaggaggtgacaggagaggatgcaatgtg
gatgcaagggcactgtggtgccaaggtgggcgtgaccaccacactgccgg
aaggcctctggcttagagggtctgcctacagccctggggtccacttctct
ctagcaccacagggcaacctagacattgctcatgtcacctgctgcctagg
ctctgatcaggctctgccctggtggggacaagctccccttcctgccactc
aggctggaacaaagaggcgcctgtctcgcaaagacccagattccctggtc
ctgatggtggcaatggatttctgactcctgggatctgcccttccctgcaa
gagttgatgggatgcagggggaggggaaaaggttgcagaggaatggggag
agtccacctcatgttccctggtctctgtggaagtgatgtgcaaacccact
ctgcaatgccccctggcccaagcagccacagtcaggactcaagatggaga
cctctggactgggaaaactgggactcccctatgaagaccactcactccag
cctgtggaatctgagaatggcacccccattttatagaccaagaagcaagg
cccagagatggtggttagggacccctgcagggacttggctagtttcagac
ctgcttacccgcgaagtggctcagcaatggcagcatccttcaggaggggc
agcttcgttatcctgcgtgggtgtgctagacacaggcccttggatggaga
ctgtgtgtggccatgcagcaaggcagcagcctgtccccaacccctagggt
cagcagagagacactaaggactcagaagaaggctgaagggaccaaggagt
caggctaaagccaaaggagtcctaactaggaacattgaagagccactgtg
gacagtcaccattgtttgggaggcttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30334732_30335914
seq2: B6Ng01-143A21.b_47_1219

seq1  GAATTCAGTGTAGACCTTTGTCCCTGCACAGCTCTGCTGGGAGTTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTAGACCTTTGTCCCTGCACAGCTCTGCTGGGAGTTTCTAA  50

seq1  GGCTCTTAGGACAGAACCTTCGAACTTCGCTTTCGTTTGGGTGCTGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTAGGACAGAACCTTCGAACTTCGCTTTCGTTTGGGTGCTGGAGG  100

seq1  CTGCTGAGGTTGCATTGCTCCTCATCCCTGCACCAGATAGGTGAGAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGGTTGCATTGCTCCTCATCCCTGCACCAGATAGGTGAGAACCC  150

seq1  CGGGTGCCACTGTGGGTGCTGGCTTTGCCAAGAGCTGCTTTTCAGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCCACTGTGGGTGCTGGCTTTGCCAAGAGCTGCTTTTCAGTAATT  200

seq1  CTCAAAGCATTCGAATGTAGTGGGCAGTGTTGCAGACCCATTTGAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGCATTCGAATGTAGTGGGCAGTGTTGCAGACCCATTTGAGAGCC  250

seq1  AAGTGGATTGAGGCCCAAGGAAACAGGGTCCCAAGCCTGGTATAGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATTGAGGCCCAAGGAAACAGGGTCCCAAGCCTGGTATAGTGGCT  300

seq1  TATGCCTGTCATCCCAGTACCTGCGGTGCAGACAAGAGGGGCTTGGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTGTCATCCCAGTACCTGCGGTGCAGACAAGAGGGGCTTGGACTA  350

seq1  CAGGCTGATCTCAAGGACAACATCAGTACATGAAACCAAATCAAACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGATCTCAAGGACAACATCAGTACATGAAACCAAATCAAACTAAA  400

seq1  CGACCCAGAGTGACACTGGGTGTGGTGGCTCCCACCTGTAATTCTAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCCAGAGTGACACTGGGTGTGGTGGCTCCCACCTGTAATTCTAGTAC  450

seq1  CTGGGAGGCCAGCCTGTGCTGTATACATAATTAGTACCAGGTCAGCTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGCCAGCCTGTGCTGTATACATAATTAGTACCAGGTCAGCTGGG  500

seq1  ATGGCATAGCAGTGCCTTGGTTCAAAAAGCAGGAGTGGGCCAGGTGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATAGCAGTGCCTTGGTTCAAAAAGCAGGAGTGGGCCAGGTGATTG  550

seq1  TGGCCACATCCCATTAATCCCAGTTCTCGGGAGGCAGAGGCAGGTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACATCCCATTAATCCCAGTTCTCGGGAGGCAGAGGCAGGTGGATT  600

seq1  TCTGTGTATCCAAGCCTGGGCTACACGGAGAAACCTTGTCTCAAAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTATCCAAGCCTGGGCTACACGGAGAAACCTTGTCTCAAAAAACA  650

seq1  ACAAAAAGGGAGTAGGGGAATAGATGAGTGGACAGACCATAGTAGGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGGAGTAGGGGAATAGATGAGTGGACAGACCATAGTAGGGAAA  700

seq1  TAGGCTGATGGACAGACCATACCCTGACATGGCTTTTTGAGTAAAGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGATGGACAGACCATACCCTGACATGGCTTTTTGAGTAAAGGCAC  750

seq1  TTGACAACCCAAGTCCCGTTCAGAACTCACACAGAAGTGGAAGGAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAACCCAAGTCCCGTTCAGAACTCACACAGAAGTGGAAGGAGAGAA  800

seq1  CGGTTGTCCTCTGTGCTCCACATGTGTACCTGAGCTGGGAAGACATGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGTCCTCTGTGCTCCACATGTGTACCTGAGCTGGGAAGACATGGCC  850

seq1  TTTACCCACCCCTGCCCTGCCACCTTCTGTCTTA-GTCTTGTGCATACCT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTACCCACCCCTGCCCTGCCACCTTCTGTCTTAGGTCTTGTGCATACCT  900

seq1  ATTGGTTCTTTCCTGTATATTAAGTGCCTACTGTTTACTGAACTCTGGGT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTGGTTCTTTCCTGTATATTAAGTGCCTACTGTTTACTGAACTCT-GGT  949

seq1  CAGCTCCCAGAGCCATGGGAGTCCTGCTGTCAGGAACTGTCCTTACCTTT  999
      |||||||||||| ||||||||| ||||||||| |||||||||||||||||
seq2  CAGCTCCCAGAG-CATGGGAGT-CTGCTGTCA-GAACTGTCCTTACCTTT  996

seq1  TCTTCAGGTGGAACAAAGAAGGAGTAAGTGGGGAG-AGACGTGTACTGGA  1048
      |||||||   |||||||||||   ||||||||||| | ||||||||||||
seq2  TCTTCAG--TGAACAAAGAAG--ATAAGTGGGGAGAAAACGTGTACTGGA  1042

seq1  CAGC-TCTGAGTATGGCGGCCAGTGCCTGTGAATTGGACCTGAGGGTGGG  1097
      |||| |||||||||||||| |||| |||||||||  || |||  ||| ||
seq2  CAGCTTCTGAGTATGGCGG-CAGT-CCTGTGAAT--GAACTGGAGGT-GG  1087

seq1  GGGTGAGCAAGAGGCT-AGAGAGTGAGAAGCCAGCCTGGGTTAGTTACA-  1145
      |||||| |||||||||   ||||||| || |||| |||| | | | ||| 
seq2  GGGTGA-CAAGAGGCTCTAAGAGTGAAAATCCAG-CTGGTTAATTAACAT  1135

seq1  CAGC-TAGACTCTGTCACAAGCAAGCAAGACTGCCTTGA  1183
      |||| | ||  || |  ||||| |||| |||||||||||
seq2  CAGCATTGAACCT-TGTCAAGCCAGCAGGACTGCCTTGA  1173

seq1: chr2_30471063_30471992
seq2: B6Ng01-143A21.g_67_994 (reverse)

seq1  GCAAGCCTCCCAAACAACGGTGACTGTCAACGGTGGCTC-TCAATGTTCC  49
      ||||||||||||||||| |||||||||| || ||||||| ||||||||||
seq2  GCAAGCCTCCCAAACAATGGTGACTGTCCACAGTGGCTCTTCAATGTTCC  50

seq1  TTAGTTA-GACTCCTTTGGCTTTAGCCTTGACTCCTTGGTCCCTCAGGCC  98
       |||||| ||||||||||||||||||| ||||||||||||||||   |||
seq2  -TAGTTAGGACTCCTTTGGCTTTAGCC-TGACTCCTTGGTCCCTTCAGCC  98

seq1  TTC-TCTGAGTCCTTAGTGTCTCCTCTGCTGACCCTAGGGGTTGGGGACA  147
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTTCTGAGTCCTTAGTGTCT-CTCTGCTGACCCTAGGGGTTGGGGACA  147

seq1  GGCCTGCTGCCTTGCTGCATGGCCACACACAGTCTCCATCCAAGGGCCTG  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-CTGCTGCCTTGCTGCATGGCCACACACAGTCTCCATCCAAGGGCCTG  196

seq1  TGTCTAGCACACCCACGCAGGATAACGAAGCTGCCCCTCCTGAAGGATGC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGCACACCCACGCAGGATAACGAAGCTGCCCCTCCTGAAGGATGC  246

seq1  TGCCATTTGCTGAGCCACTTCGCGGGTAAGCAGGTCTGAAACTAGCCAAG  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCA-TTGCTGAGCCACTTCGCGGGTAAGCAGGTCTGAAACTAGCCAAG  295

seq1  TCCCTGCAGGGGTCCCTAACCACCATCTCTGGGCCTTGCTTCTTGGTCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCAGGGGTCCCTAACCACCATCTCTGGGCCTTGCTTCTTGGTCTA  345

seq1  TAAAATGGGGGTGCCATTCTCAGATTCCACAGGCTGGAGTGAGTGGTCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGGGGTGCCATTCTCAGATTCCACAGGCTGGAGTGAGTGGTCTT  395

seq1  CATAGGGGAGTCCCAGTTTTCCCAGTCCAGAGGTCTCCATCTTGAGTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGGAGTCCCAGTTTTCCCAGTCCAGAGGTCTCCATCTTGAGTCCT  445

seq1  GACTGTGGCTGCTTGGGCCAGGGGGCATTGCAGAGTGGGTTTGCACATCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGCTGCTTGGGCCAGGGGGCATTGCAGAGTGGGTTTGCACATCA  495

seq1  CTTCCACAGAGACCAGGGAACATGAGGTGGACTCTCCCCATTCCTCTGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAGAGACCAGGGAACATGAGGTGGACTCTCCCCATTCCTCTGCA  545

seq1  ACCTTTTCCCCTCCCCCTGCATCCCATCAACTCTTGCAGGGAAGGGCAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCCCCTCCCCCTGCATCCCATCAACTCTTGCAGGGAAGGGCAGA  595

seq1  TCCCAGGAGTCAGAAATCCATTGCCACCATCAGGACCAGGGAATCTGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGAGTCAGAAATCCATTGCCACCATCAGGACCAGGGAATCTGGGT  645

seq1  CTTTGCGAGACAGGCGCCTCTTTGTTCCAGCCTGAGTGGCAGGAAGGGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCGAGACAGGCGCCTCTTTGTTCCAGCCTGAGTGGCAGGAAGGGGA  695

seq1  GCTTGTCCCCACCAGGGCAGAGCCTGATCAGAGCCTAGGCAGCAGGTGAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCCCCACCAGGGCAGAGCCTGATCAGAGCCTAGGCAGCAGGTGAC  745

seq1  ATGAGCAATGTCTAGGTTGCCCTGTGGTGCTAGAGAGAAGTGGACCCCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCAATGTCTAGGTTGCCCTGTGGTGCTAGAGAGAAGTGGACCCCAG  795

seq1  GGCTGTAGGCAGACCCTCTAAGCCAGAGGCCTTCCGGCAGTGTGGTGGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGCAGACCCTCTAAGCCAGAGGCCTTCCGGCAGTGTGGTGGTC  845

seq1  ACGCCCACCTTGGCACCACAGTGCCCTTGCATCCACATTGCATCCTCTCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCACCTTGGCACCACAGTGCCCTTGCATCCACATTGCATCCTCTCC  895

seq1  TGTCACCTCCTACAGTCTGCAGCCAGGGAATTC  930
      |||||||||||||||||||||||||||||||||
seq2  TGTCACCTCCTACAGTCTGCAGCCAGGGAATTC  928