BAC Information

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BAC

Clone NameB6Ng01-143D04
Chromosome2 (Build37)
Map Location 140,526,265 - 140,663,815
singlet/doubletdoublet
Overlap genenone
Upstream gene5430433G21Rik, Tasp1, LOC672103, LOC269365, Esf1, 2310003L22Rik, Sel1l2, 2900006F19Rik, Flrt3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143D04.bB6Ng01-143D04.g
ACCDH941198DH941199
length1,1641,177
definitionDH941198|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D04, 5' end.DH941199|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,526,265 - 140,527,447)(140,662,608 - 140,663,815)
sequence
ggaattctattgactgctcggctagcccagccaaagggaggtacccaaaa
aggaggtaaatgcagggacaggctcattgaaggtgctgcaaattctttac
ctgagattttgtgctaacatgatgaaatattgtttactgtcagtgaactc
atagtatctggagagaaggactgataagcatgaatgcatctgttaaagga
attatgagagcggactcagagcagcctgtgcctgcctcaccacttcctta
agcttagcctgttgtctctctgggttccaatcctttccttttcccttttt
ctttccttcctccttccttcctttatttatttaagccctcagccttcgag
tggggggaatacaagtatacattaccattccaggcttcagtttcttattt
attatattacttacatattttgaagggattgcctggaaaagaaaatgcta
taagtaatggagacaaatagaatgaattacagcatagggctttcctaaac
actacataacagggatctcacaaatcctgctcatttcttcttctccatgt
ttggagtaaacatggagaaagtaaaccccagggccatgtctatgccaacc
cagagctgcacagctaatggcacatagagctcttacttgagtttctaagg
gtggcacattattttaaaaaatgtagtatttgggcaaatcattcatccac
ttgaaaaacataaaatcatataaaatgaaattttgaaaaacttctgtaat
gagtactttgaaatataaataacaagctatttagaaagagaaatctttta
tacctgaacctaatgttaggatatcctaagaagtaaacacgggcaaacag
ataatctcagatgtatttattagaaagcaaaactggaaacaaagaacagc
acaggatataagcaaaggaaccacaggtagtgcaaggcagaacgagtcac
gacccagctgatcataggccacgctgaaagtcacctcgaagcttgcctat
tcctgaacccccaactttcaaagtaaggcaaatgtggtaagttttaagga
aggataactgaccaagaacttaaatctaaccccgatcggaaccacagagc
agctgaggcagttacttatggtcattctccttcttatttcttgttgatta
accatcttcaggaa
gaattccacagagtcctgtaaatacttcaatagccaaaaacatttttttc
cttttatacacttttctgccatcactaagctcagacctaaagagagcaca
ccacatgccttaactgaaggtaaacattgagttcaagcaactaccacaaa
tgtacacacttgaaacgccactgcaaaaatactggaaatcacactatgtt
ttatagaaatgaatcttcatcctaaaatgcccttgatttttgagtcaaat
attgatttgttctcatgtttctaaagagctggggctttttttttaaagaa
aaaaattaagtatgaggttgaagcaaaactttggagttttatgtctgatg
attgttacaaaaaaggctctgctttaacctattggaaatacagactgaaa
tagtcagggatcataaaggcctctaaaagactgaacatgacaaaattcta
aaattctcattttaatactgaacagtaataatagataataacattattaa
gaatgtaccagggattatttaacttgcattactaatttagtttgtacata
aaccttagaaatatataaaacatcatgtatgtacatttattacatggcta
ttcttcaatgggaaggtattcttggttatagtgtataaacataataggta
gtaactatattttatttatctttgtagatccacacaccactaaatagcca
atataataatatatcataagatattacagtttgcctctgctttaataaat
agttttagatacaaattgtaaataaatgaatgaacttattttataaatga
aagtggtattattacttcagtttaaaatatgacatgtataaaatgtgata
ataacagaagtgagagacagagagattcttttactcaattttactaattc
ttggcccaagttgctcaaattactttattttgatttttaaacttttattg
agttcaatgtgctaccctctcttttgcccttagcatgctagtttgtgtca
tctttctcttattttcctgctagtcaatcacatgactcacctgaatgttc
ttatggtgtacctagaacagctactatggcaggtcactggctgacatttt
aaatgtgaagaggctgggtagtcatcatatactacagttttgaaatttta
ctttggttatctaataattcatgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_140526265_140527447
seq2: B6Ng01-143D04.b_31_1193

seq1  GAATTCTATTGACTGCTCGGCTAGCCCAGCCAAAGGGAGGTACCCAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGACTGCTCGGCTAGCCCAGCCAAAGGGAGGTACCCAAAAA  50

seq1  GGAGGTAAATGCAGGGACAGGCTCATTGAAGGTGCTGCAAATTCTTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAATGCAGGGACAGGCTCATTGAAGGTGCTGCAAATTCTTTACC  100

seq1  TGAGATTTTGTGCTAACATGATGAAATATTGTTTACTGTCAGTGAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTGTGCTAACATGATGAAATATTGTTTACTGTCAGTGAACTCA  150

seq1  TAGTATCTGGAGAGAAGGACTGATAAGCATGAATGCATCTGTTAAAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTGGAGAGAAGGACTGATAAGCATGAATGCATCTGTTAAAGGAA  200

seq1  TTATGAGAGCGGACTCAGAGCAGCCTGTGCCTGCCTCACCACTTCCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGAGCGGACTCAGAGCAGCCTGTGCCTGCCTCACCACTTCCTTAA  250

seq1  GCTTAGCCTGTTGTCTCTCTGGGTTCCAATCCTTTCCTTTTCCCTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCCTGTTGTCTCTCTGGGTTCCAATCCTTTCCTTTTCCCTTTTTC  300

seq1  TTTCCTTCCTCCTTCCTTCCTTTATTTATTTAAGCCCTCAGCCTTCGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCTCCTTCCTTCCTTTATTTATTTAAGCCCTCAGCCTTCGAGT  350

seq1  GGGGGGAATACAAGTATACATTACCATTCCAGGCTTCAGTTTCTTATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAATACAAGTATACATTACCATTCCAGGCTTCAGTTTCTTATTTA  400

seq1  TTATATTACTTACATATTTTGAAGGGATTGCCTGGAAAAGAAAATGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTACTTACATATTTTGAAGGGATTGCCTGGAAAAGAAAATGCTAT  450

seq1  AAGTAATGGAGACAAATAGAATGAATTACAGCATAGGGCTTTCCTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGGAGACAAATAGAATGAATTACAGCATAGGGCTTTCCTAAACA  500

seq1  CTACATAACAGGGATCTCACAAATCCTGCTCATTTCTTCTTCTCCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAACAGGGATCTCACAAATCCTGCTCATTTCTTCTTCTCCATGTT  550

seq1  TGGAGTAAACATGGAGAAAGTAAACCCCAGGGCCATGTCTATGCCAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAACATGGAGAAAGTAAACCCCAGGGCCATGTCTATGCCAACCC  600

seq1  AGAGCTGCACAGCTAATGGCACATAGAGCTCTTACTTGAGTTTCTAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCACAGCTAATGGCACATAGAGCTCTTACTTGAGTTTCTAAGGG  650

seq1  TGGCACATTATTTTAAAAAATGTAGTATTTGGGCAAATCATTCATCCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATTATTTTAAAAAATGTAGTATTTGGGCAAATCATTCATCCACT  700

seq1  TGAAAAACATAAAATCATATAAAATGAAATTTTGAAAAACTTCTGTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACATAAAATCATATAAAATGAAATTTTGAAAAACTTCTGTAATG  750

seq1  AGTACTTTGAAATATAAATAACAAGCTATTTAGAAAGAGAAATCTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTGAAATATAAATAACAAGCTATTTAGAAAGAGAAATCTTTTAT  800

seq1  ACCTGAACCTAATG-TAAGATATCCTAAGAAGTAAACACGGCAAAACAGA  849
      |||||||||||||| || |||||||||||||||||||||||  |||||||
seq2  ACCTGAACCTAATGTTAGGATATCCTAAGAAGTAAACACGGGCAAACAGA  850

seq1  TAATCTCAGATGTATTTATTAGAAAGCAAAACTGGAAACAAAGAACAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGATGTATTTATTAGAAAGCAAAACTGGAAACAAAGAACAGCA  900

seq1  CAGGATAAAAGCAAAGGAACCACAGGAAGTGCAAGGCAGAACGAGTCACG  949
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  CAGGATATAAGCAAAGGAACCACAGGTAGTGCAAGGCAGAACGAGTCACG  950

seq1  ACACAGCTGATCAAAGGCCACGCTGAGAGTCACCTCGAAGCCTGCCTAAT  999
      || |||||||||| |||||||||||| |||||||||||||| |||||| |
seq2  ACCCAGCTGATCATAGGCCACGCTGAAAGTCACCTCGAAGCTTGCCTATT  1000

seq1  CCTGAAACACCCAGCTTTTCAGAGTTAGGGCAAAATGT-GTAGGTTTTTA  1048
      |||| ||| |||| | ||||| ||| |||   |||||| ||| | |||||
seq2  CCTG-AACCCCCAAC-TTTCAAAGTAAGG--CAAATGTGGTAAG-TTTTA  1045

seq1  AGGAAGGATAACTTGACACAAGATACTTAGAATCCTAACCCCCGATCAGG  1098
      |||||||||||| |||| ||||| ||||| ||| |||| |||||||| ||
seq2  AGGAAGGATAAC-TGAC-CAAGA-ACTTA-AAT-CTAA-CCCCGATC-GG  1088

seq1  AACCACAGGAGCAGCTGAAGCAGTTACCTCAATGGTCCATCTCTTCTTTA  1148
      ||||||| |||||||||| |||||||| |  ||||||  |||| |  |||
seq2  AACCACA-GAGCAGCTGAGGCAGTTACTT--ATGGTCATTCTCCTTCTTA  1135

seq1  TTTCCTTGTGTGGATTTATACCAATTCTTCAGGAA  1183
      ||||    ||| ||||   ||||  ||||||||||
seq2  TTTC---TTGTTGATT--AACCA--TCTTCAGGAA  1163

seq1: chr2_140662608_140663815
seq2: B6Ng01-143D04.g_67_1243 (reverse)

seq1  GAATCATTGAATAATTAATTTAGATATAACATAAGTAAAATATTTTTAAA  50
      |||||| ||||| |||       | |||||  ||||||||     ||  |
seq2  GAATCA-TGAATTATT-------AGATAACCAAAGTAAAA-----TTTCA  37

seq1  AAACTGGTAAGTATATGATTGACTAACACAGCCTTCCTTTCACATTTAAA  100
      ||||||   ||||||||| ||||| || ||||||    ||||||||||||
seq2  AAACTG--TAGTATATGA-TGACT-ACCCAGCCT---CTTCACATTTAAA  80

seq1  ATGGCCAGCCAGTGA-CTG-CATAGTAGGCTTTGTTCTTAGGTACA-CAT  147
      || | |||||||||| ||| ||||||||    ||||| |||||||| |||
seq2  AT-GTCAGCCAGTGACCTGCCATAGTAG---CTGTTC-TAGGTACACCAT  125

seq1  -AGAACATTTCCAAGGTGAGTCATGTGATTGACTAAGCAGGAAAAT-AGA  195
       ||||||||    ||||||||||||||||||||| ||||||||||| |||
seq2  AAGAACATT---CAGGTGAGTCATGTGATTGACT-AGCAGGAAAATAAGA  171

seq1  GAAAGGATGACACAAACTAGCAATGCTAAGGGCAAAAGAGAGGGTAGCCA  245
      |||| |||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GAAA-GATGACACAAACTAGC-ATGCTAAGGGCAAAAGAGAGGGTAG-CA  218

seq1  CATTGAACCTCAATAAAAGTTTAAAAAATCAAAATAAAGTAATTTGAGCA  295
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CATTGAA-CTCAATAAAAGTTT-AAAAATCAAAATAAAGTAATTTGAGCA  266

seq1  ACTTGGGCCAAGAATTAGTAAAATTGAGTAAAAGAAATCTCTCTGTCTCT  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTTGGGCCAAGAATTAGTAAAATTGAGTAAAAG-AATCTCTCTGTCTCT  315

seq1  CACTTCTGTTATTATCACATTTTATACATGTCATATTTTAAAACTGAAGT  395
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTTCTGTTATTATCACATTTTATACATGTCATATTTT-AAACTGAAGT  364

seq1  AATAATACCACTTTCATTTATAAAATAAGTTCATTCATTTATTTACAATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACCACTTTCATTTATAAAATAAGTTCATTCATTTATTTACAATT  414

seq1  TGTATCTAAAACTATTTATTAAAGCAGAGGCAAACTGTAATATCTTATGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAAAACTATTTATTAAAGCAGAGGCAAACTGTAATATCTTATGA  464

seq1  TATATTATTATATTGGCTATTTAGTGGTGTGTGGATCTACAAAGATAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATTATATTGGCTATTTAGTGGTGTGTGGATCTACAAAGATAAAT  514

seq1  AAAATATAGTTACTACCTATTATGTTTATACACTATAACCAAGAATACCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAGTTACTACCTATTATGTTTATACACTATAACCAAGAATACCT  564

seq1  TCCCATTGAAGAATAGCCATGTAATAAATGTACATACATGATGTTTTATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTGAAGAATAGCCATGTAATAAATGTACATACATGATGTTTTATA  614

seq1  TATTTCTAAGGTTTATGTACAAACTAAATTAGTAATGCAAGTTAAATAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAGGTTTATGTACAAACTAAATTAGTAATGCAAGTTAAATAAT  664

seq1  CCCTGGTACATTCTTAATAATGTTATTATCTATTATTACTGTTCAGTATT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTACATTCTTAATAATGTTATTATCTATTATTACTGTTCAGTATT  714

seq1  AAAATGAGAATTTTAGAATTTTGTCATGTTCAGTCTTTTAGAGGCCTTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAATTTTAGAATTTTGTCATGTTCAGTCTTTTAGAGGCCTTTA  764

seq1  TGATCCCTGACTATTTCAGTCTGTATTTCCAATAGGTTAAAGCAGAGCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTGACTATTTCAGTCTGTATTTCCAATAGGTTAAAGCAGAGCCT  814

seq1  TTTTTGTAACAATCATCAGACATAAAACTCCAAAGTTTTGCTTCAACCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTAACAATCATCAGACATAAAACTCCAAAGTTTTGCTTCAACCTC  864

seq1  ATACTTAATTTTTTTCTTTAAAAAAAAAGCCCCAGCTCTTTAGAAACATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATTTTTTTCTTTAAAAAAAAAGCCCCAGCTCTTTAGAAACATG  914

seq1  AGAACAAATCAATATTTGACTCAAAAATCAAGGGCATTTTAGGATGAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATCAATATTTGACTCAAAAATCAAGGGCATTTTAGGATGAAGA  964

seq1  TTCATTTCTATAAAACATAGTGTGATTTCCAGTATTTTTGCAGTGGCGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTATAAAACATAGTGTGATTTCCAGTATTTTTGCAGTGGCGTT  1014

seq1  TCAAGTGTGTACATTTGTGGTAGTTGCTTGAACTCAATGTTTACCTTCAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTGTACATTTGTGGTAGTTGCTTGAACTCAATGTTTACCTTCAG  1064

seq1  TTAAGGCATGTGGTGTGCTCTCTTTAGGTCTGAGCTTAGTGATGGCAGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCATGTGGTGTGCTCTCTTTAGGTCTGAGCTTAGTGATGGCAGAA  1114

seq1  AAGTGTATAAAAGGAAAAAAATGTTTTTGGCTATTGAAGTATTTACAGGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTATAAAAGGAAAAAAATGTTTTTGGCTATTGAAGTATTTACAGGA  1164

seq1  CTCTGTGGAATTC  1208
      |||||||||||||
seq2  CTCTGTGGAATTC  1177