BAC Information

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BAC

Clone NameB6Ng01-143D24
Chromosome2 (Build37)
Map Location 157,712,837 - 157,853,177
singlet/doubletdoublet
Overlap geneCtnnbl1, LOC100043681, Gm691, 2610036D13Rik
Upstream geneSla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
Downstream gene2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143D24.bB6Ng01-143D24.g
ACCDH941236DH941237
length1,0411,131
definitionDH941236|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D24, 5' end.DH941237|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,712,837 - 157,713,863)(157,852,068 - 157,853,177)
sequence
gaattctttgggttcacagtgagcttgggatacgtgtggtaaccatcacc
gtttgccagaagcctgtaagcacctccctagggctcacaggagagggttt
ggatatttgaagccattagtgtgcgggtacagttacaggagggaactggg
tgccattacttggtcaagaaggcctgcaacagtgatgctgacctttataa
taggagggtctcaatcctgtcctgaggccgccctgcctcttacacggcag
gggagcctatccctgtgctgtgattcagggctggtgctgtatctctgacc
ccttacagggtgcaggaccctcagggcagtgtgaggtcagggttgagatt
agagggcaggcagtaaatcaaggctggctctgtgcaggccaccccaggaa
gcctgccctgccctcctctcagccccatcactcccctccctgtcaccatc
aaactgagtgaagaaacaaagcctcgtaaagaacaccagctcatcgctct
gtcctctttgattttaattttgtttttcagtttgggttgcttcctttttt
tttttaacatactaattagatgagagcttttttttttctttgattttatg
gcctacatatttcctaagttttgctggcaggatgacagctgatgtatccc
ttgaggtctcaggaaaccgctgatgaggcaggcccagcaggggactttcc
caggggcttttagtcccttttttcatggtttccccctccttttctgttgg
gggggtgccaagaagctaccgaaataatttgatggctcatttaaagccct
tgctctctgcagactgcttaactcggcgcctccctgggtccagccatccc
caaacaggcggacagttctgaagaccaccaggccctttgaagggactgag
aagggcaagttcccctggtgggctccttcaggagaagcggtgggcttcct
gcctccatccctgattactggcacaaagcaggcatgtttccactgagtca
gctgcgtgccaagtggtctttaggcttctctttgacgaagt
gaattcatagctgattgaattaacgcacaagtcaacaccttataatgata
tagggaggcagaggcaggtggttctcctgagggttccaggccagcttggt
ctgtgcagtaaattccagaccagcttttaagaccccaccttacaaaaaag
ctcgggcttttgagacctcatctaaatagttgctgagtactgagtaactc
atgttctgagtaccctttgtactaagtctatgtatccagatgttactatt
ttaaatgtcagtccttaacaacagtgctctggcacggggattgctatcac
catttgataatgagaacacatgagattcgagtgagttacctgtccagagc
tgcttgggcatagccaggaaatggcaaaactagaattcagtcaaggcctg
actcagtcaaatcacctgatcccaaattcctcacatattagccaaaggtt
ccttcattcagtgaataatttctgagcatctgtgtttgaagcactgttct
gggaaaacagacaagctgtccctgcccttgggaacttgccttctagagaa
gagaaaaaatggacatgcaagtataaaatgaaacaaaaaaatgattttca
taaaaaatccaggaagccaagggggtagggaatgcatgggctttgagaaa
atgtaagtttggtcacatagaagtatgtttatatatgcccttcggagagg
ataaagtagccattgggttgcttgcaaggagctagagaacaagccataag
ctatctttccagataatgagaaaaccaacttcacaccccttgttagcagt
tttgaggacttgaaaagaatggtataccagaagtgatagaaaaccagaaa
gtagttaagacattaaagccagaagaagaatgaagggacccgtgtcacct
gggccaccgggaggcacgaagtaagggtttagtgttctctgaaacggtac
agtagcaagtgaaggacagaaccactgattcttactgccactgttctgtg
tgcattggccacgcaagccttgcttaacataagcaaggcttattatgtag
gagaccgaacatagtacagaaaagacggaaggccaggtgtcagccggctt
gtaatacccagtggaaagggtgacgcatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_157712837_157713863
seq2: B6Ng01-143D24.b_48_1088

seq1  GAATTCTTTGGGTTCACAGTGAGCTTGGGATACGTGTGGTAACCATCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGTTCACAGTGAGCTTGGGATACGTGTGGTAACCATCACC  50

seq1  GTTTGCCAGAAGCCTGTAAGCACCTCCCTAGGGCTCACAGGAGAGGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCAGAAGCCTGTAAGCACCTCCCTAGGGCTCACAGGAGAGGGTTT  100

seq1  GGATATTTGAAGCCATTAGTGTGCGGGTACAGTTACAGGAGGGAACTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTGAAGCCATTAGTGTGCGGGTACAGTTACAGGAGGGAACTGGG  150

seq1  TGCCATTACTTGGTCAAGAAGGCCTGCAACAGTGATGCTGACCTTTATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTACTTGGTCAAGAAGGCCTGCAACAGTGATGCTGACCTTTATAA  200

seq1  TAGGAGGGTCTCAATCCTGTCCTGAGGCCGCCCTGCCTCTTACACGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGGTCTCAATCCTGTCCTGAGGCCGCCCTGCCTCTTACACGGCAG  250

seq1  GGGAGCCTATCCCTGTGCTGTGATTCAGGGCTGGTGCTGTATCTCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTATCCCTGTGCTGTGATTCAGGGCTGGTGCTGTATCTCTGACC  300

seq1  CCTTACAGGGTGCAGGACCCTCAGGGCAGTGTGAGGTCAGGGTTGAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGGGTGCAGGACCCTCAGGGCAGTGTGAGGTCAGGGTTGAGATT  350

seq1  AGAGGGCAGGCAGTAAATCAAGGCTGGCTCTGTGCAGGCCACCCCAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCAGGCAGTAAATCAAGGCTGGCTCTGTGCAGGCCACCCCAGGAA  400

seq1  GCCTGCCCTGCCCTCCTCTCAGCCCCATCACTCCCCTCCCTGTCACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCTGCCCTCCTCTCAGCCCCATCACTCCCCTCCCTGTCACCATC  450

seq1  AAACTGAGTGAAGAAACAAAGCCTCGTAAAGAACACCAGCTCATCGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGTGAAGAAACAAAGCCTCGTAAAGAACACCAGCTCATCGCTCT  500

seq1  GTCCTCTTTGATTTTAATTTTGTTTTTCAGTTTGGGTTGCTTCCTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTTGATTTTAATTTTGTTTTTCAGTTTGGGTTGCTTCCTTTTTT  550

seq1  TTTTTAACATACTAATTAGATGAGAGCTTTTTTTTTTCTTTGATTTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACATACTAATTAGATGAGAGCTTTTTTTTTTCTTTGATTTTATG  600

seq1  GCCTACATATTTCCTAAGTTTTGCTGGCAGGATGACAGCTGATGTATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACATATTTCCTAAGTTTTGCTGGCAGGATGACAGCTGATGTATCCC  650

seq1  TTGAGGTCTCAGGAAACCGCTGATGAGGCAGGCCCAGCAGGGGACTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTCTCAGGAAACCGCTGATGAGGCAGGCCCAGCAGGGGACTTTCC  700

seq1  CA-GGGCTTTTAGTCCCCTTTTTCATGGTTTCCCCCTCCTTTTCTGTT-G  748
      || |||||||||||||| |||||||||||||||||||||||||||||| |
seq2  CAGGGGCTTTTAGTCCCTTTTTTCATGGTTTCCCCCTCCTTTTCTGTTGG  750

seq1  GGGGGTGCCAAG-AGCTACCG-AATAA-TTGATGGCTCA-TTAAAGCCC-  793
      |||||||||||| |||||||| ||||| ||||||||||| ||||||||| 
seq2  GGGGGTGCCAAGAAGCTACCGAAATAATTTGATGGCTCATTTAAAGCCCT  800

seq1  TGCTCTCTGCAGACTGCTT-ACTCGGCG-CTCCCT-GGTCCAGCCATCCC  840
      ||||||||||||||||||| |||||||| |||||| ||||||||||||||
seq2  TGCTCTCTGCAGACTGCTTAACTCGGCGCCTCCCTGGGTCCAGCCATCCC  850

seq1  CAAACAGGCGGACAGTTCTGAAGACCA-CAGGCCC-TTGAAGGGACTGAG  888
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CAAACAGGCGGACAGTTCTGAAGACCACCAGGCCCTTTGAAGGGACTGAG  900

seq1  AAGGGC-AGTTCCCCT-GTGGGCTCC-TCAGGAG-AGCGGT-GGCTTCCT  933
      |||||| ||||||||| ||||||||| ||||||| |||||| ||||||||
seq2  AAGGGCAAGTTCCCCTGGTGGGCTCCTTCAGGAGAAGCGGTGGGCTTCCT  950

seq1  GCCTCCATCCCTGATACCTGGCACAAAGCAGGGCATG-TTCCACTGAGTC  982
      |||||||||||||||  ||||||||||||| |||||| ||||||||||||
seq2  GCCTCCATCCCTGATTACTGGCACAAAGCA-GGCATGTTTCCACTGAGTC  999

seq1  AGCTGCGTGCCAAGGTGGGTCCTTAGGCTTCTCTCTGACAGAAGT  1027
      ||||||||||||||   |||| |||||||||||| |||| |||||
seq2  AGCTGCGTGCCAAG--TGGTCTTTAGGCTTCTCTTTGAC-GAAGT  1041

seq1: chr2_157852068_157853177
seq2: B6Ng01-143D24.g_66_1196 (reverse)

seq1  TGGACTGCGTCACCCTTTCACCTGGGTTATTACA--GCAGCTGACAACCT  48
      |||| ||||||||||||||  ||||| |||||||   | |||||| ||||
seq2  TGGA-TGCGTCACCCTTTCCACTGGG-TATTACAAGCCGGCTGAC-ACCT  47

seq1  GGCCTTCCTGTCTTTCTTGTACTATGTTC-GTCTCCTACATAAT-AGCCT  96
      |||||||| ||||||  |||||||||||| |||||||||||||| |||||
seq2  GGCCTTCC-GTCTTTTCTGTACTATGTTCGGTCTCCTACATAATAAGCCT  96

seq1  TGCTTATG-TAAGCAAAGCCTGCGT-GCAAATGCCACAACAGAACAGT-G  143
      |||||||| ||||||| || ||||| || |||| ||| |||||||||| |
seq2  TGCTTATGTTAAGCAAGGCTTGCGTGGCCAATG-CAC-ACAGAACAGTGG  144

seq1  CAGTAAGAATCAGT-GCTCTGTCC-TCACTTGCTACTG-ACCG-TTCAGA  189
      |||||||||||||| | ||||||| ||||||||||||| |||| ||||||
seq2  CAGTAAGAATCAGTGGTTCTGTCCTTCACTTGCTACTGTACCGTTTCAGA  194

seq1  GAACACTAAACCCTTAC-TCGTGCCTACCGGT-GCCCACGTGACAC-GGT  236
      ||||||||||||||||| |||||||| ||||| ||||| ||||||| |||
seq2  GAACACTAAACCCTTACTTCGTGCCTCCCGGTGGCCCAGGTGACACGGGT  244

seq1  CCCTCCATAC-TCTTCTGGCTTT-ATGTC-TAACTACCTTCTGG-TTTCT  282
      |||| ||| | |||||||||||| ||||| ||||||| |||||| |||||
seq2  CCCTTCATTCTTCTTCTGGCTTTAATGTCTTAACTACTTTCTGGTTTTCT  294

seq1  ATCAC-TCTGGTATACCA-TCTTTTCAAGTCCTCAAAACTGCTAACAA-G  329
      ||||| |||||||||||| ||||||||||||||||||||||||||||| |
seq2  ATCACTTCTGGTATACCATTCTTTTCAAGTCCTCAAAACTGCTAACAAGG  344

seq1  GGTGTGAAGTTGGTTTTCTCATTATCTGGAAAGATAGCTTATGGCTTGTT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAAGTTGGTTTTCTCATTATCTGGAAAGATAGCTTATGGCTTGTT  394

seq1  CTCTAGCTCCTTGCAAGCAACCAAAT-GCTACTTTATCCTCTCCGAAGGG  428
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  CTCTAGCTCCTTGCAAGCAACCCAATGGCTACTTTATCCTCTCCGAAGGG  444

seq1  CATATAT-AACATACTTCTATGTGACC-AACTTACATTTTCTC-AAGCCC  475
      ||||||| ||||||||||||||||||| ||||||||||||||| ||||||
seq2  CATATATAAACATACTTCTATGTGACCAAACTTACATTTTCTCAAAGCCC  494

seq1  ATGCATTCCCTACCCCCTTGGCTTCCTGGA-TTTTTATGAAAATCATTTT  524
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGCATTCCCTACCCCCTTGGCTTCCTGGATTTTTTATGAAAATCATTTT  544

seq1  TTTGTTTCATTTTATACTTGCATGTCCA-TTTTTCTCTTCTCTAGAAGGC  573
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGTTTCATTTTATACTTGCATGTCCATTTTTTCTCTTCTCTAGAAGGC  594

seq1  AAGTTCCCAAGGGCAGGGACAGCTTGTCTGTTTTCCCAGAACAGTGCTTC  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCAAGGGCAGGGACAGCTTGTCTGTTTTCCCAGAACAGTGCTTC  644

seq1  AAACACAGATGCTCAGAAATTATTCACTGAATGAAGGAACCTTTGGCTAA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGATGCTCAGAAATTATTCACTGAATGAAGGAACCTTTGGCTAA  694

seq1  TATGTGAGGAATTTGGGATCAGGTGATTTGACTGAGTCAGGCCTTGACTG  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGGAATTTGGGATCAGGTGATTTGACTGAGTCAGGCCTTGACTG  744

seq1  AATTCTAGTTTTGCCATTTCCTGGCTATGCCCAAGCAGCTCTGGACAGGT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGTTTTGCCATTTCCTGGCTATGCCCAAGCAGCTCTGGACAGGT  794

seq1  AACTCACTCGAATCTCATGTGTTCTCATTATCAAATGGTGATAGCAATCC  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCGAATCTCATGTGTTCTCATTATCAAATGGTGATAGCAATCC  844

seq1  CCGTGCCAGAGCACTGTTGTTAAGGACTGACATTTAAAATAGTAACATCT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCCAGAGCACTGTTGTTAAGGACTGACATTTAAAATAGTAACATCT  894

seq1  GGATACATAGACTTAGTACAAAGGGTACTCAGAACATGAGTTACTCAGTA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACATAGACTTAGTACAAAGGGTACTCAGAACATGAGTTACTCAGTA  944

seq1  CTCAGCAACTATTTAGATGAGGTCTCAAAAGCCCGAGCTTTTTTGTAAGG  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAACTATTTAGATGAGGTCTCAAAAGCCCGAGCTTTTTTGTAAGG  994

seq1  TGGGGTCTTAAAAGCTGGTCTGGAATTTACTGCACAGACCAAGCTGGCCT  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTTAAAAGCTGGTCTGGAATTTACTGCACAGACCAAGCTGGCCT  1044

seq1  GGAACCCTCAGGAGAACCACCTGCCTCTGCCTCCCTATATCATTATAAGG  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTCAGGAGAACCACCTGCCTCTGCCTCCCTATATCATTATAAGG  1094

seq1  TGTTGACTTGTGCGTTAATTCAATCAGCTATGAATTC  1110
      |||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTTGTGCGTTAATTCAATCAGCTATGAATTC  1131