BAC Information

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BAC

Clone NameB6Ng01-143E20
Chromosome2 (Build37)8 (Build37)
Map Location 142,776,691 - 142,777,698104,635,929 - 104,637,023
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143E20.bB6Ng01-143E20.g
ACCDH941275DH941276
length9311,081
definitionDH941275|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E20, 5' end.DH941276|Mus musculus domesticus DNA, BAC clone: B6Ng01-143E20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,691 - 142,777,698)(104,635,929 - 104,637,023)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatgggtgattccgccagaagttctt
ttatccttgagaagactttttgctatcctaggttttttgttattccagac
aaatttgcaaattgctccttccaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaattcctttcttcagagatttgaagtttttatcat
acagatctttcacctccttagttagagtcac
gaattcagtgtctgtaccctttcttctggattggacttatatttgtttta
caaatttctcagtttgaattgttctaagaaatgaggtgggggctggagag
atggctcagaagttaagagcactgactgctcttccagaggtcctgagttc
aattcccagcagccacatgttggctcataaccaactataatgggatctgt
tgtcctcttctggggtgtctgaagacagccacaggatgctcatcatatat
atatgtaatatattatatatattttatatataataaaataaatgatgagg
aataaatgatgaggaatacatttaaccactaaatcagaccacaggacaaa
aagaaaaggagtaactttgtgtatcatggtcaaaaggaactttgagctga
ggaagatatcaataacaacttagatgacaatccaaactagaacaactgaa
aaggttaagggtttgttttgttgttgtttattttttgaggaaccagacct
gaaccattgaaaaataaactaaatgtctgtttgcatttaactttctaaaa
aaaaaaaatcaatggaaacaaaagcgatggacttacatatgtgtatcaca
tgcacacgtaaatattattctataagtgagattaatgagcagaaaactgg
acatagtactaccggaggatccagcaatacctctcctgggcatatatcca
gaagatgccccaacaggtaagaaggacacatgctccactatgttcatagc
agccttatttataatagccagaagctggaaagaccctagatgcccctcaa
cagaggaatggatacagaaaatgtggtacatctacacaatggagtactac
tcagctattaaaaaggatgaatttatgaaattcctagccaatggatggac
ctggagggcatcatcctgagtgagtaacccattcacaagaactccccaca
tatgtattcatgatagtggatatagccccaaacctaggatcccagagatt
aagaataatttgctaacacatgaactcaggaagattgagactgaagtgtg
aacctattgctcctccttaattgggaccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776691_142777698
seq2: B6Ng01-143E20.b_46_593 (reverse)

seq1  AATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCAC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCTATGGTCAC  50

seq1  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGAAAGACAGCAT  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCAT  100

seq1  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGG  150
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCGTGTAGAAGAATGC  150

seq1  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATC  200

seq1  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT  250

seq1  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTCCTGAACAGAA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAA  300

seq1  CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCTAATG  350

seq1  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  400

seq1  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  450

seq1  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAA  500

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATCCAGTGGAAGA  550
      |||||||||||||||||||||||||||||| ||            ||| |
seq2  TCAAATAACCCCATTAAAAAATGGGGCTCAGAA----------CTGAACA  540

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  600
      ||||    |||                                       
seq2  AAGA----ATTC--------------------------------------  548

seq1  AGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  650
                                                        
seq2  --------------------------------------------------  548

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  700
                                                        
seq2  --------------------------------------------------  548

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  750
                                                        
seq2  --------------------------------------------------  548

seq1  CTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  800
                                                        
seq2  --------------------------------------------------  548

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATA  850
                                                        
seq2  --------------------------------------------------  548

seq1  AGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAA  900
                                                        
seq2  --------------------------------------------------  548

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  950
                                                        
seq2  --------------------------------------------------  548

seq1  CCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1000
                                                        
seq2  --------------------------------------------------  548

seq1  AAGAATTC  1008
              
seq2  --------  548

seq1: chr8_104635929_104637023
seq2: B6Ng01-143E20.g_65_1145

seq1  GAATTCAGTGTCTGTACCCTTTCTTCTGGATTGGACTTATATTTGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCTGTACCCTTTCTTCTGGATTGGACTTATATTTGTTTTA  50

seq1  CAAATTTCTCAGTTTGAATTGTTCTAAGAAATGAGGTGGGGGCTGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTCAGTTTGAATTGTTCTAAGAAATGAGGTGGGGGCTGGAGAG  100

seq1  ATGGCTCAGAAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGAAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTC  150

seq1  AATTCCCAGCAGCCACATGTTGGCTCATAACCAACTATAATGGGATCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCAGCAGCCACATGTTGGCTCATAACCAACTATAATGGGATCTGT  200

seq1  TGTCCTCTTCTGGGGTGTCTGAAGACAGCCACAGGATGCTCATCATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTTCTGGGGTGTCTGAAGACAGCCACAGGATGCTCATCATATAT  250

seq1  ATATGTAATATATTATATATATTTTATATATAATAAAATAAATGATGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAATATATTATATATATTTTATATATAATAAAATAAATGATGAGG  300

seq1  AATAAATGATGAGGAATACATTTAACCACTAAATCAGACCACAGGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGATGAGGAATACATTTAACCACTAAATCAGACCACAGGACAAA  350

seq1  AAGAAAAGGAGTAACTTTGTGTATCATGGTCAAAAGGAACTTTGAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAGTAACTTTGTGTATCATGGTCAAAAGGAACTTTGAGCTGA  400

seq1  GGAAGATATCAATAACAACTTAGATGACAATCCAAACTAGAACAACTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATATCAATAACAACTTAGATGACAATCCAAACTAGAACAACTGAA  450

seq1  AAGGTTAAGGGTTTGTTTTGTTGTTGTTTATTTTTTGAGGAACCAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAGGGTTTGTTTTGTTGTTGTTTATTTTTTGAGGAACCAGACCT  500

seq1  GAACCATTGAAAAATAAACTAAATGTCTGTTTGCATTTAACTTTCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATTGAAAAATAAACTAAATGTCTGTTTGCATTTAACTTTCTAAAA  550

seq1  AAAAAAAATCAATGGAAACAAAAGCGATGGACTTACATATGTGTATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCAATGGAAACAAAAGCGATGGACTTACATATGTGTATCACA  600

seq1  TGCACACGTAAATATTATTCTATAAGTGAGATTAATGAGCAGAAAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACGTAAATATTATTCTATAAGTGAGATTAATGAGCAGAAAACTGG  650

seq1  ACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA  700

seq1  GAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGC  750

seq1  AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCCTTATTTATAATAGCCAGAAGCTGGAAAGACCCTAGATGCCCCTCAA  800

seq1  CAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTAC  850

seq1  TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGA  900
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TCAGCTATTAAAAAGGATGAATTTATGAAATTCCTAGCC-AATGGATGGA  899

seq1  CCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCAC  950
      |||||||||||||||||||||||| ||||| |||||||||   ||||| |
seq2  CCTGGAGGGCATCATCCTGAGTGA-GTAACCCATTCACAA--GAACTCCC  946

seq1  ACAATATGTATTCATTGATAAGTGGATATTAGCCCCAAACCTAGGATACC  1000
         ||||||||||| |||| |||||||| |||||||||||||||||| ||
seq2  CACATATGTATTCA-TGAT-AGTGGATA-TAGCCCCAAACCTAGGATCCC  993

seq1  CAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGGAGAATGAA  1050
        |||| ||||| |||||||||| |||||||| |||||| | ||| || |
seq2  AGAGAT-TAAGA-ATAATTTGCT-AACACATG-AACTCAGGAAGATTG-A  1038

seq1  GACTGAAGTGTGGACACTA-TGCCCCTCCTTAGATTTGGGAACAAA  1095
      |||||||||||| || ||| ||| |||||||  | |||||| ||||
seq2  GACTGAAGTGTGAAC-CTATTGCTCCTCCTT--AATTGGGACCAAA  1081