BAC Information

Click to search

BAC

Clone NameB6Ng01-143H03
Chromosome2 (Build37)
Map Location 151,490,985 - 151,657,147
singlet/doubletdoublet
Overlap geneLOC668929, BC052486, 5430405G05Rik, Psmf1
Upstream geneAcss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph
Downstream geneRspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143H03.bB6Ng01-143H03.g
ACCDH941378DH941379
length1,1861,136
definitionDH941378|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H03, 5' end.DH941379|Mus musculus domesticus DNA, BAC clone: B6Ng01-143H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,490,985 - 151,492,190)(151,656,002 - 151,657,147)
sequence
gaattcaaacccaaattctgttgtccaaaaacctaacttacttccttctc
tcttcttcaaccttcatcctttagctatcctggtttcaataaggggtacc
tcctttttatgccccaaattaaatagtaattctttatttctttagggcta
catttaattcatcaacatatcatgtttactctgccttccatacatatcca
ttaatttgactgctactatattaataaagtgaagtttgaaaattggtcta
atactacttcatatgaattactacaataatttcacaagttttcttttcct
ttcttttccctttatagtgaaacagccagagggagcatgttgagaccaag
tgagatctggtcactcctctattctctattgaaaactcttgtgcataatc
tctcagcaagataaaaaccctattgtagcctacaaaccatatgtcacctg
tatctcttgctccttctctgacctcctgttgttactactcagcctttctt
tcattccacttcatttcatttgcattcttgctgctcctgaacatgtccag
tggcctcagtgctatcatcacctttccacttcgttcttggccattctctc
agagtttttacttcactgggtatttccattagaacattcttctatgttat
tgtataattttgttcccttatctcctccaggcttatgttcttactttatc
agaaaatcctttcctgacaatcccattattttaatttatttatttgtctt
aatatttatttatcttcatattgcatatttacttgttattatcagtctat
accaggaactgttttattcattggtatctcttcactgcctagaactgtgc
ctgctataggaaaggcatttatttaataaatatttactagatgaacaaac
atactatcaatagtacaaacaatattcaaccaatgagacatttttggttt
tgtactttggaatttcacactgcaactttagccttgtaatttgtacttgt
tcagttgttttcagctgagttacctttatcaatctgaatatgaaacaata
aaacatcagaaaacaaataattactttatatttgtgattcaattcatgaa
attcttctggtattgatagtgttgtaagctgctcaagtctctttcggagt
caaacagtcttgaaaacaaataaggtacaataagca
gaattcagtgacacctctgcagacgtgtctctacagttcatgcacttagc
tggacagctccagaggtcctaggatgtcttggtccaggatgtctgaaatg
ggacttggtttccccctggctctgattctcagagcatcctgtctacttat
ttgttcactaggaatgtggaccagggcttttgccttctcccatgcccctg
gctctagtctgtctcccatgttacacactgtaactgtcacatcttgatct
ccttgatacttcccttcccatgtctaagaagcctcccttaaacccccagg
actcttctgaaagcttcccgggctttagctttagactgaggaattagagt
acaagaagccctcagctagtgaggtacggggtggcggatggatggtaacc
ccagtcccctgcctgggctaaacttcctcaggagtatgtcctttgttgca
ccctttggggctgggctctgtcacccacttcaaatttgcttgattctgtg
ttggaagagctctttgtgtccgtttgtcatctctgagccatggaatgtta
taaaagccacagcctgtatccctaacacccatccacgaggttgctttaag
tcagcctgagaagccttggtcaccaggatgatgtccaagcttcttgccat
gtacccaaagaccctgtactgggtctaccctctgtgtttggtccatgttg
ttgtctctggcctaaagaaaactttcttttcattattgcttgtctgagtt
tgcacctattcttccagacttaggtcaagtacatctccagaaaattctcc
agactacgtttcatccacgaagtgtccctagggcctgagcctgcgcctgg
attgtggcacaaataacattgggttttcttaccgtttcctctagtagttg
gctaggttagcactccttttgggcatggcctttgagactgagaacattgt
gtgttgacctcgggtggctctctacacagctctcctgtgctcatttgcat
agcatctgattgtccaggataggctatgcatgcttagcacttcaataggg
gcagtttacttggtaaacatcttagcgaaactaacattatacctgtgctt
ttttttttagcagtaaagcaatttatcttatcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_151490985_151492190
seq2: B6Ng01-143H03.b_47_1232

seq1  GAATTCAAACCCAAATTCTGTTGTCCAAAAACCTAACTTACTTCCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCAAATTCTGTTGTCCAAAAACCTAACTTACTTCCTTCTC  50

seq1  TCTTCTTCAACCTTCATCCTTTAGCTATCCTGGTTTCAATAAGGGGTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCAACCTTCATCCTTTAGCTATCCTGGTTTCAATAAGGGGTACC  100

seq1  TCCTTTTTATGCCCCAAATTAAATAGTAATTCTTTATTTCTTTAGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTATGCCCCAAATTAAATAGTAATTCTTTATTTCTTTAGGGCTA  150

seq1  CATTTAATTCATCAACATATCATGTTTACTCTGCCTTCCATACATATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATTCATCAACATATCATGTTTACTCTGCCTTCCATACATATCCA  200

seq1  TTAATTTGACTGCTACTATATTAATAAAGTGAAGTTTGAAAATTGGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGACTGCTACTATATTAATAAAGTGAAGTTTGAAAATTGGTCTA  250

seq1  ATACTACTTCATATGAATTACTACAATAATTTCACAAGTTTTCTTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTTCATATGAATTACTACAATAATTTCACAAGTTTTCTTTTCCT  300

seq1  TTCTTTTCCCTTTATAGTGAAACAGCCAGAGGGAGCATGTTGAGACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCCTTTATAGTGAAACAGCCAGAGGGAGCATGTTGAGACCAAG  350

seq1  TGAGATCTGGTCACTCCTCTATTCTCTATTGAAAACTCTTGTGCATAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCTGGTCACTCCTCTATTCTCTATTGAAAACTCTTGTGCATAATC  400

seq1  TCTCAGCAAGATAAAAACCCTATTGTAGCCTACAAACCATATGTCACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAAGATAAAAACCCTATTGTAGCCTACAAACCATATGTCACCTG  450

seq1  TATCTCTTGCTCCTTCTCTGACCTCCTGTTGTTACTACTCAGCCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTGCTCCTTCTCTGACCTCCTGTTGTTACTACTCAGCCTTTCTT  500

seq1  TCATTCCACTTCATTTCATTTGCATTCTTGCTGCTCCTGAACATGTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCACTTCATTTCATTTGCATTCTTGCTGCTCCTGAACATGTCCAG  550

seq1  TGGCCTCAGTGCTATCATCACCTTTCCACTTCGTTCTTGGCCATTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAGTGCTATCATCACCTTTCCACTTCGTTCTTGGCCATTCTCTC  600

seq1  AGAGTTTTTACTTCACTGGGTATTTCCATTAGAACATTCTTCTATGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTTACTTCACTGGGTATTTCCATTAGAACATTCTTCTATGTTAT  650

seq1  TGTATAATTTTGTTCCCTTATCTCCTCCAGGCTTATGTTCTTACTTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATTTTGTTCCCTTATCTCCTCCAGGCTTATGTTCTTACTTTATC  700

seq1  AGAAAATCCTTTCCTGACAATCCCATTATTTTAATTTATTTATTTGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCTTTCCTGACAATCCCATTATTTTAATTTATTTATTTGTCTT  750

seq1  AATATTTATTTATCTTCATATTGCATATTTACTTGTTATTATCAGTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTTATCTTCATATTGCATATTTACTTGTTATTATCAGTCTAT  800

seq1  ACCAGGAACTGTTTTATTCATTGGTATCTCTTCACTGCCTAGAACTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAACTGTTTTATTCATTGGTATCTCTTCACTGCCTAGAACTGTGC  850

seq1  CTGCTATAGGAAAGGCATTTATTTAATAAATATTTACTAGATGAACAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATAGGAAAGGCATTTATTTAATAAATATTTACTAGATGAACAAAC  900

seq1  ATACTATCAATAGTACAAACAATATTCAACCAATGAGACATTTTTGGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCAATAGTACAAACAATATTCAACCAATGAGACATTTTTGGTTT  950

seq1  TGTACTTTGGAATTTCACACTGCAACTTTAGCCTTGTAATTTGTACTTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTGGAATTTCACACTGCAACTTTAGCCTTGTAATTTGTACTTGT  1000

seq1  TCAGTTGTTTTCCAGCTGAGGTTACCTTTATCAATCTGAATATGAAAACA  1050
      ||||||||||| ||||||| |||||||||||||||||||||||| |||||
seq2  TCAGTTGTTTT-CAGCTGA-GTTACCTTTATCAATCTGAATATG-AAACA  1047

seq1  ATAAAACATCAAGAAAACAAAATAATTTACTTTATATTGTAGATTTCAAA  1100
      |||||||||| ||||||| |||||| ||||||||||||   ||||   ||
seq2  ATAAAACATC-AGAAAAC-AAATAA-TTACTTTATATTTGTGATT--CAA  1092

seq1  ATCATGAAATTCTTCTGGTAATGTGATAGTGTTGTAAGCTGCTTCAAAAT  1150
       |||||||||||||||||||   ||||||||||||||||||||    || 
seq2  TTCATGAAATTCTTCTGGTA--TTGATAGTGTTGTAAGCTGCT---CAAG  1137

seq1  TCTCTTTGGGGAGGTCAACCAGTCCTGAAAACAATGAAAAGGGAACACAA  1200
      ||||||| ||   ||||| ||||| |||||||||  | ||||    ||||
seq2  TCTCTTTCGG--AGTCAAACAGTCTTGAAAACAA--ATAAGG---TACAA  1180

seq1  TAAGCA  1206
      ||||||
seq2  TAAGCA  1186

seq1: chr2_151656002_151657147
seq2: B6Ng01-143H03.g_69_1204 (reverse)

seq1  TCCTGATATAGATAAGTGGCTTTTTCTGCTGAAAAAAAAAAGCACAAGTA  50
      |||||||| |||||| | || ||| ||||| ||||||||||||||| || 
seq2  TCCTGATA-AGATAAATTGC-TTTACTGCT-AAAAAAAAAAGCACAGGT-  46

seq1  ATAATGTATGTGTCGCTTAAGGATGTTGTAACAAGTAAACTGCCCCTATT  100
      |||||||  || |||||  | |||||| || ||||||||||||||||| |
seq2  ATAATGTTAGTTTCGCT--AAGATGTT-TACCAAGTAAACTGCCCCTA-T  92

seq1  TGAAGTGCTTAGCATGCAT-GCCTATCCTGGAACATCAGATGCTATGCAA  149
      ||||||||| ||||||||| ||||||||||||  ||||||||||||||||
seq2  TGAAGTGCTAAGCATGCATAGCCTATCCTGGACAATCAGATGCTATGCAA  142

seq1  ATGAGCACAGGAAGAGGCCTGTGTAGAGAGCCACCCGAGGTCCACCACAC  199
      ||||||||||| ||||  ||||||||||||||||||||||| || |||||
seq2  ATGAGCACAGG-AGAG--CTGTGTAGAGAGCCACCCGAGGT-CAACACAC  188

seq1  AATGTTCTCAGTTCTC-AAGGCCATGCCCAGAAGGAGTGCTAACCTAGCC  248
      ||||||||||| |||| ||||||||||||| |||||||||||||||||||
seq2  AATGTTCTCAG-TCTCAAAGGCCATGCCCAAAAGGAGTGCTAACCTAGCC  237

seq1  AACTACTAGAGGAAACGGTAAGGAAAACCCAATGTTATTTGTGCCACAAT  298
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACTACTAGAGGAAACGGTAA-GAAAACCCAATGTTATTTGTGCCACAAT  286

seq1  CCAGGCGCAGGCTCAGGCCCTAGGGACACTTCGTGGATG-AACGTAGTCT  347
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGGCGCAGGCTCAGGCCCTAGGGACACTTCGTGGATGAAACGTAGTCT  336

seq1  GGAGAATTTTCTGGAGATGTACTTGACCTAAGTCTGGAAGAATAGGTGC-  396
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGAGAATTTTCTGGAGATGTACTTGACCTAAGTCTGGAAGAATAGGTGCA  386

seq1  AACTCAGACAAGCAATAATGAAAAGAAAGTTTTCTTTAGGCCAGAGACAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGACAAGCAATAATGAAAAGAAAGTTTTCTTTAGGCCAGAGACAA  436

seq1  CAACATGGACCAAACACAGAGGGTAGACCCAGTACAGGGTCTTTGGGTAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGACCAAACACAGAGGGTAGACCCAGTACAGGGTCTTTGGGTAC  486

seq1  ATGGCAAGAAGCTTGGACATCATCCTGGTGACCAAGGCTTCTCAGGCTGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAGAAGCTTGGACATCATCCTGGTGACCAAGGCTTCTCAGGCTGA  536

seq1  CTTAAAGCAACCTCGTGGATGGGTGTTAGGGATACAGGCTGTGGCTTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGCAACCTCGTGGATGGGTGTTAGGGATACAGGCTGTGGCTTTTA  586

seq1  TAACATTCCATGGCTCAGAGATGACAAACGGACACAAAGAGCTCTTCCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCCATGGCTCAGAGATGACAAACGGACACAAAGAGCTCTTCCAA  636

seq1  CACAGAATCAAGCAAATTTGAAGTGGGTGACAGAGCCCAGCCCCAAAGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATCAAGCAAATTTGAAGTGGGTGACAGAGCCCAGCCCCAAAGGG  686

seq1  TGCAACAAAGGACATACTCCTGAGGAAGTTTAGCCCAGGCAGGGGACTGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAAAGGACATACTCCTGAGGAAGTTTAGCCCAGGCAGGGGACTGG  736

seq1  GGTTACCATCCATCCGCCACCCCGTACCTCACTAGCTGAGGGCTTCTTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCATCCATCCGCCACCCCGTACCTCACTAGCTGAGGGCTTCTTGT  786

seq1  ACTCTAATTCCTCAGTCTAAAGCTAAAGCCCGGGAAGCTTTCAGAAGAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAATTCCTCAGTCTAAAGCTAAAGCCCGGGAAGCTTTCAGAAGAGT  836

seq1  CCTGGGGGTTTAAGGGAGGCTTCTTAGACATGGGAAGGGAAGTATCAAGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGTTTAAGGGAGGCTTCTTAGACATGGGAAGGGAAGTATCAAGG  886

seq1  AGATCAAGATGTGACAGTTACAGTGTGTAACATGGGAGACAGACTAGAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGATGTGACAGTTACAGTGTGTAACATGGGAGACAGACTAGAGC  936

seq1  CAGGGGCATGGGAGAAGGCAAAAGCCCTGGTCCACATTCCTAGTGAACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCATGGGAGAAGGCAAAAGCCCTGGTCCACATTCCTAGTGAACAA  986

seq1  ATAAGTAGACAGGATGCTCTGAGAATCAGAGCCAGGGGGAAACCAAGTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGACAGGATGCTCTGAGAATCAGAGCCAGGGGGAAACCAAGTCC  1036

seq1  CATTTCAGACATCCTGGACCAAGACATCCTAGGACCTCTGGAGCTGTCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGACATCCTGGACCAAGACATCCTAGGACCTCTGGAGCTGTCCA  1086

seq1  GCTAAGTGCATGAACTGTAGAGACACGTCTGCAGAGGTGTCACTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTGCATGAACTGTAGAGACACGTCTGCAGAGGTGTCACTGAATTC  1136