BAC Information

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BAC

Clone NameB6Ng01-143J14
Chromosome2 (Build37)
Map Location 13,162,148 - 13,304,512
singlet/doubletdoublet
Overlap geneRsu1, Cubn
Upstream geneItga8, 2310047O13Rik, LOC100040837, Pter, C1ql3
Downstream geneTrdmt1, Vim, St8sia6, Ptpla, Stam, 2010003H20Rik, Mrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143J14.bB6Ng01-143J14.g
ACCDH941493DH941494
length1,0351,063
definitionDH941493|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J14, 5' end.DH941494|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,162,148 - 13,163,360)(13,303,445 - 13,304,512)
sequence
gaattctgagatcacgtggtggtgcacctttcaaaacaaattgccaagct
cctctgacctggaattgtggctaccaagggcagtaagaacaagtgctata
acaacgagacatgtgcattacacaaagtgtacgtgtgacacagaggtctc
attttcagcctctgtggtcaccgccacttaaacatgacaatgatggtact
tggcctgtcctcaccaatgtgcactttgcctaaaaatgacttcatcagcc
tttttgcagcacacgaggggccctccttcactgccattcttaattctcag
taatcaacagctcggtgacatagcctccagctctgtctaacgcacacgca
cacataaatccacaacacaaatccctcaccgtgacattccgctcaacttc
actagactcggaaagccccctaacaaatgcttgccacatgattaggaaat
cactcaagtctacaggaaatgtggcacgtgggaagaggtgacagtcaatt
agggatgagaaaggagagtggggccctgtcattaaaatctttaaagcttt
accaccaagaagaaaatggcccatcagtcactcgagatattccttttaaa
cagatatcaattctacgaccctggaaccactccaaaccagcactgatgcc
caggagaatcctacagaagggacccaggaaccagtctccaaacaggagaa
aaatatattcaatttatacaatcttgtgagtttttctccatctataaagc
agggacaaaaagcacattcaacatcgaaattttccccactggaggaagaa
atatggatgagaacaaggacttttattctaaaatagttttattttgttgc
tgagacttggggctggggggagaccctttggctggactttgaacgtggtg
ggctaaagataccgtcttggcctcagcctcctgagtagctgggatacagt
tattttactggccacacttcggctcattttttcctcatgaaaaggttaac
actggccagacattttcttattaccacaggcaact
gaattctcttgtatatcctcatcttataagcacagacaggaaacttagag
gactcgttgacttgtccaaggtcccatagctgtttcctaggacagagatg
tgacatgaggccaccttaagtcacttccttaatgccaagagagtatggag
ctatgtgaaatctctctagagtgaattacatattaatttatttgtatagc
attcaggttaatccctctgcccaaaaacattgctgaaattttctatcagt
tgtttgtatgatcataaatccaaggagcgctgacagatacttggtaacat
tgtaagaattaaatacaacttatggaatgaggtctacctagaatattaac
aattgcagagccagacattaagtaatttataacatcataagctattggac
taggaaacatttcaaaggcaaggatgattcttagagcataggtttgaaag
aacccatgaaaaaatgaattcacctgtatttaggtttcctgctgttttta
ttattttgagacagggtcatatatagatcatgatgactgcagactttcca
tgtattaacagataactttgaacttctgatccctcttctccacctctggg
taggattatgggatgcatggctatgcacagtgtattcagtgctggagttt
gaaactaggttcaagtgcatgttagacaagcgctctaccagctgaattat
accctacattattattttaattaacttttggcaccaatatttatagtatt
taatgtattatgctagtattacccatgttcccttatttatgttgggataa
aatgatttaatatgattagttctttgatggctttagcatagaaccaatac
aataagctaaacccgagtagggtattatctggcttgtgcttgcaccagac
tgcttacattttttatatacagggatatctcgagtggctgaactctgtct
cctactgcaagtgcggtggatttccaggttccagaaggagaaatcattct
ccaaattacccaacaactacagaagctacacggaaggctcttgatcatca
agttgagaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_13162148_13163360
seq2: B6Ng01-143J14.b_46_1259

seq1  GAATTCTGAGATCACGTGGTGGTGCACCTTTCAAAACAAATTGCCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGATCACGTGGTGGTGCACCTTTCAAAACAAATTGCCAAGCT  50

seq1  CCTCTGACCTGGAATTGTGGCTACCAAGGGCAGTAAGAACAAGTGCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACCTGGAATTGTGGCTACCAAGGGCAGTAAGAACAAGTGCTATA  100

seq1  ACAACGAGACATGTGCATTACACAAAGTGTACGTGTGACACAGAGGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGAGACATGTGCATTACACAAAGTGTACGTGTGACACAGAGGTCTC  150

seq1  ATTTTCAGCCTCTGTGGTCACCGCCACTTAAACATGACAATGATGGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGCCTCTGTGGTCACCGCCACTTAAACATGACAATGATGGTACT  200

seq1  TGGCCTGTCCTCACCAATGTGCACTTTGCCTAAAAATGACTTCATCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTCCTCACCAATGTGCACTTTGCCTAAAAATGACTTCATCAGCC  250

seq1  TTTTTGCAGCACACGAGGGGCCCTCCTTCACTGCCATTCTTAATTCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGCACACGAGGGGCCCTCCTTCACTGCCATTCTTAATTCTCAG  300

seq1  TAATCAACAGCTCGGTGACATAGCCTCCAGCTCTGTCTAACGCACACGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACAGCTCGGTGACATAGCCTCCAGCTCTGTCTAACGCACACGCA  350

seq1  CACATAAATCCACAACACAAATCCCTCACCGTGACATTCCGCTCAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATCCACAACACAAATCCCTCACCGTGACATTCCGCTCAACTTC  400

seq1  ACTAGACTCGGAAAGCCCCCTAACAAATGCTTGCCACATGATTAGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACTCGGAAAGCCCCCTAACAAATGCTTGCCACATGATTAGGAAAT  450

seq1  CACTCAAGTCTACAGGAAATGTGGCACGTGGGAAGAGGTGACAGTCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAGTCTACAGGAAATGTGGCACGTGGGAAGAGGTGACAGTCAATT  500

seq1  AGGGATGAGAAAGGAGAGTGGGGCCCTGTCATTAAAATCTTTAAAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAGAAAGGAGAGTGGGGCCCTGTCATTAAAATCTTTAAAGCTTT  550

seq1  ACCACCAAGAAGAAAATGGCCCATCAGTCACTCGAGATATTCCTTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAAGAAGAAAATGGCCCATCAGTCACTCGAGATATTCCTTTTAAA  600

seq1  CAGATATCAATTCTACGACCCTGGAACCACTCCAAACCAGCACTGATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATCAATTCTACGACCCTGGAACCACTCCAAACCAGCACTGATGCC  650

seq1  CAGGAGAATCCTACAGAAGGGACCCAGGAACCAGTCTCCAAACAGGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAATCCTACAGAAGGGACCCAGGAACCAGTCTCCAAACAGGAGAA  700

seq1  AAATATATTCAATTTATACAATCTTGTGAGTTTTTCTCCATCTATAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTCAATTTATACAATCTTGTGAGTTTTTCTCCATCTATAAAGC  750

seq1  AGGGACAAAAAGCACATTCAACATCGAAATCTTCCCCACTGGAGGAAGAA  800
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGACAAAAAGCACATTCAACATCGAAATTTTCCCCACTGGAGGAAGAA  800

seq1  ATATGGATGAGAACAAAGACTTTTATTCTAAAATAGTTTTATTTTGTTGC  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATGGATGAGAACAAGGACTTTTATTCTAAAATAGTTTTATTTTGTTGC  850

seq1  TGAGACTTGGGGCT-GGGGGAGACCC-TTGGCTGGAC-TTGAACGT-GTG  896
      |||||||||||||| ||||||||||| |||||||||| |||||||| |||
seq2  TGAGACTTGGGGCTGGGGGGAGACCCTTTGGCTGGACTTTGAACGTGGTG  900

seq1  GGCTAAAGATACCGTCTT-GCCTCAGCCTCCTGAGTAGCTGGGATACAGT  945
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGCTAAAGATACCGTCTTGGCCTCAGCCTCCTGAGTAGCTGGGATACAGT  950

seq1  TA-TATACT-GCCACAC-TCGGCTCAATATTTCCCTCATGAAAAGCTAAA  992
      || | |||| ||||||| ||||||| || ||| |||||||||||| | ||
seq2  TATTTTACTGGCCACACTTCGGCTC-ATTTTTTCCTCATGAAAAGGTTAA  999

seq1  CACTGGCCAGACA-TTTCCTATTACCACAG--CACTTACATGTCTATCAA  1039
      ||||||||||||| |||| |||||||||||   |||              
seq2  CACTGGCCAGACATTTTCTTATTACCACAGGCAACTNNNNNNNNNNNNNN  1049

seq1  AAAATAGAACTACCAGCAGGCACAGGAC-GTGGAAGAATTCTT-GAAGG-  1086
         |||| |||||||||||||||||||| ||||||| |||||| ||||| 
seq2  NNNATAG-ACTACCAGCAGGCACAGGACGGTGGAAG-ATTCTTGGAAGGA  1097

seq1  AGAGTAGGGGAACATACACATCTTAGTAGTGCG-ACTAAATAAACTTCAC  1135
      |||||| ||||||||||   |||||||| |||| ||| |||||||||  |
seq2  AGAGTACGGGAACATACCATTCTTAGTA-TGCGAACTTAATAAACTTACC  1146

seq1  TTTTTCCCTGAAATGGTAAGTTATCATTACTTTCTCTAATGGAAATAACA  1185
      ||||||| ||  ||||  || | |||||||||||||  | || | ||   
seq2  TTTTTCCTTG--ATGGGTAGGT-TCATTACTTTCTCCTAAGG-AGTA--C  1190

seq1  TAATCAGAAGGAATGTAACCGAAGAGAA  1213
      || ||   ||||||||||||||| ||||
seq2  TATTC---AGGAATGTAACCGAA-AGAA  1214

seq1: chr2_13303445_13304512
seq2: B6Ng01-143J14.g_69_1131 (reverse)

seq1  ATATTTCTCAACTTGAATGATCCAAGAGCACTCCGTGTTAGC-TCTGTAG  49
      ||||||||||||||| ||||| |||||||  |||||| |||| |||||||
seq2  ATATTTCTCAACTTG-ATGAT-CAAGAGCCTTCCGTG-TAGCTTCTGTAG  47

seq1  TTGTTGGGGTAATTTGGAGAATGAATTTCTCC-TCTGGAAACCTGGAAAA  98
      ||||| ||||||||||||||||| |||||||| ||||| |||||||||| 
seq2  TTGTT-GGGTAATTTGGAGAATG-ATTTCTCCTTCTGG-AACCTGGAAA-  93

seq1  TCCCACCGCAACCTGCAAGTAGGAGACAGAGTTCAGCCACTCGAGATATC  148
        ||||||| || ||| |||||||||||||||||||||||||||||||||
seq2  -TCCACCGC-ACTTGC-AGTAGGAGACAGAGTTCAGCCACTCGAGATATC  140

seq1  CCTGTTATAT-AAAAATGTAAGCAGTCTGGTGCCAAGCAC-AGGCAGATA  196
      |||| ||||| ||||||||||||||||||||| ||||||| || ||||||
seq2  CCTG-TATATAAAAAATGTAAGCAGTCTGGTG-CAAGCACAAGCCAGATA  188

seq1  ATACCCTACTC-GGTTTAGC-TATTGTATTGGTTCTATGCTAAAGCCATC  244
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  ATACCCTACTCGGGTTTAGCTTATTGTATTGGTTCTATGCTAAAGCCATC  238

seq1  AAAGAACTAATCATATTAAATCA-TTTATCCCAACATAAATAAGGGAACA  293
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAAGAACTAATCATATTAAATCATTTTATCCCAACATAAATAAGGGAACA  288

seq1  TGGGTAATACTAGCATAATACATTAAATACTATAAATATTGGTGCCAAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAATACTAGCATAATACATTAAATACTATAAATATTGGTGCCAAAA  338

seq1  GTTAATTAAAATAATAATGTAGGGTATAATTCAGCTGGTAGAGCGCTTGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTAAAATAATAATGTAGGGTATAATTCAGCTGGTAGAGCGCTTGT  388

seq1  CTAACATGCACTTGAACCTAGTTTCAAACTCCAGCACTGAATACACTGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGCACTTGAACCTAGTTTCAAACTCCAGCACTGAATACACTGTG  438

seq1  CATAGCCATGCATCCCATAATCCTACCCAGAGGTGGAGAAGAGGGATCAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCATGCATCCCATAATCCTACCCAGAGGTGGAGAAGAGGGATCAG  488

seq1  AAGTTCAAAGTTATCTGTTAATACATGGAAAGTCTGCAGTCATCATGATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAAAGTTATCTGTTAATACATGGAAAGTCTGCAGTCATCATGATC  538

seq1  TATATATGACCCTGTCTCAAAATAATAAAAACAGCAGGAAACCTAAATAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGACCCTGTCTCAAAATAATAAAAACAGCAGGAAACCTAAATAC  588

seq1  AGGTGAATTCATTTTTTCATGGGTTCTTTCAAACCTATGCTCTAAGAATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATTCATTTTTTCATGGGTTCTTTCAAACCTATGCTCTAAGAATC  638

seq1  ATCCTTGCCTTTGAAATGTTTCCTAGTCCAATAGCTTATGATGTTATAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCCTTTGAAATGTTTCCTAGTCCAATAGCTTATGATGTTATAAA  688

seq1  TTACTTAATGTCTGGCTCTGCAATTGTTAATATTCTAGGTAGACCTCATT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAATGTCTGGCTCTGCAATTGTTAATATTCTAGGTAGACCTCATT  738

seq1  CCATAAGTTGTATTTAATTCTTACAATGTTACCAAGTATCTGTCAGCGCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGTTGTATTTAATTCTTACAATGTTACCAAGTATCTGTCAGCGCT  788

seq1  CCTTGGATTTATGATCATACAAACAACTGATAGAAAATTTCAGCAATGTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATTTATGATCATACAAACAACTGATAGAAAATTTCAGCAATGTT  838

seq1  TTTGGGCAGAGGGATTAACCTGAATGCTATACAAATAAATTAATATGTAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCAGAGGGATTAACCTGAATGCTATACAAATAAATTAATATGTAA  888

seq1  TTCACTCTAGAGAGATTTCACATAGCTCCATACTCTCTTGGCATTAAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTAGAGAGATTTCACATAGCTCCATACTCTCTTGGCATTAAGGA  938

seq1  AGTGACTTAAGGTGGCCTCATGTCACATCTCTGTCCTAGGAAACAGCTAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTAAGGTGGCCTCATGTCACATCTCTGTCCTAGGAAACAGCTAT  988

seq1  GGGACCTTGGACAAGTCAACGAGTCCTCTAAGTTTCCTGTCTGTGCTTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTTGGACAAGTCAACGAGTCCTCTAAGTTTCCTGTCTGTGCTTAT  1038

seq1  AAGATGAGGATATACAAGAGAATTC  1068
      |||||||||||||||||||||||||
seq2  AAGATGAGGATATACAAGAGAATTC  1063