BAC Information

Click to search

BAC

Clone NameB6Ng01-143J19
Chromosome2 (Build37)
Map Location 117,973,319 - 118,088,037
singlet/doubletdoublet
Overlap geneFsip1
Upstream geneSpred1, LOC624574, 2610510H03Rik, Rasgrp1, Thbs1
Downstream geneGpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143J19.bB6Ng01-143J19.g
ACCDH941503DH941504
length899657
definitionDH941503|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J19, 5' end.DH941504|Mus musculus domesticus DNA, BAC clone: B6Ng01-143J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,087,131 - 118,088,037)(117,973,319 - 117,973,967)
sequence
gaattctcatgttgcatacattttaaaaggcaactgtttaaaaaaggaaa
acaccagagatcacacgaagtcttcgtagctctgtattttctaagttttt
tttccaaactctgtcgcatcaccaagaaatgtgagaaaatttaatggttc
tcattaagcatccaatataaaaactggagggagggcctgggagatggctc
actgggtaaaagcacttgccattggagtatgagaacccgagctcttagat
ctaaagccccataaaagctggaggcggtaatagacatctgcatgcccaga
gctcctctggggagatgggggtggagaaagaaaattctagaaagttgatg
ggttagccaatctcagtctcacatatgccctgaaaagacaataaagggac
tctgtcttaaacaaggtggaaggcaagtattgatacttgagattgccctc
tgatctccacacccatattggcacacctgggttgcatttgtacatgtgta
taatatagacctgcacaggatgcacacacttacacatgcacacacataca
aagaaaaaaatggcctttgtgcacagaacagaagcgatgtgtaggcacat
ggagatgatttacctgtaactcctcaaaaaaaaaaaaaaaaaaaccaagc
aaacaaacaaaaaacagttggaggttctaggagccctgacatccatcacc
tgtgagggtcccttcaaagacccaatcagcattttatcaaaatcattcat
tgggtgatgtatttacagttaaaggtggagaaggtggtgtgaaattctga
tatccttgctcccaggtacagccctggatgtcagagtttatgcatgtgga
tttactatcaaggatgtaagacctcaatccatggggcggaaaaccccct
gaattcatctgaggccagctcagatcaacaaggtttgatttatatggatg
tccctcccctatgagaaagaacactcacctagactcacaaaagaatcggt
gttcagccctaggaactagaaagaggaattgagtaaccccttgaatggcc
aagaaatcttctcacagcaccatgtccaggagccaagctgccctgccaca
ctctaatgtgggatttagtttgtccatcgggatctgcacacatgtgataa
tcagcgcaggagaataaacactaaaggccaagctcagccagtagagggga
ggacactgaacagactcctgtgacaccctggggatgtctcacaacatcaa
gccatcagtcacacttgcctgccagcactggccacatcagtcacaccctc
ttctgtttctctgttgttttcctgagtaattaagtggtaacagtcaggca
tttctccatgtttctgctgttcccaactgagacaagaggcaacagttttc
ctagtcctgctcaaggttctgagggtggagggcacagcactcattgaact
tctaaaaattcgtctacaaggcttcatggacgagttcaggggaccacaga
gccatggcccagtagcatcagtgttactgggagcaagtggtacttgagga
tccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_118087131_118088037
seq2: B6Ng01-143J19.b_49_947 (reverse)

seq1  AGGGGGTTTTCAGCCCCATGGATTGGAGTTCTTAACTCCATTGTATAGTA  50
      ||||||||||| |||||||||||| ||| |||||  ||| ||| ||||||
seq2  AGGGGGTTTTCCGCCCCATGGATT-GAGGTCTTACATCC-TTG-ATAGTA  47

seq1  AAACCACCATTGCATAAACTCTGACAT-CAGGGCTGTACCTGAGAGCAAA  99
      || ||||   ||||||||||||||||| |||||||||||||| |||||| 
seq2  AATCCAC--ATGCATAAACTCTGACATCCAGGGCTGTACCTGGGAGCAAG  95

seq1  GATATCAGAAATTTCACACCACCTTCTCCACCTTTAACTGTAAATACATC  149
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAG-AATTTCACACCACCTTCTCCACCTTTAACTGTAAATACATC  144

seq1  ACCCAATGAATGATTTTGATAAAATGCTGATTTGGTCTTTGAAGGGACCC  199
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCCAATGAATGATTTTGATAAAATGCTGATTGGGTCTTTGAAGGGACCC  194

seq1  TCACAGGTGATGGATGTCAGGGCTCCTAGAACCTCCAACTGTTTTTTGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTGATGGATGTCAGGGCTCCTAGAACCTCCAACTGTTTTTTGTT  244

seq1  TGTTTGCTTGGTTTTTTTTTTTTTTTTTTTTTTGAGGAGTTACAGGTAAA  299
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTGG---TTTTTTTTTTTTTTTTTTTGAGGAGTTACAGGTAAA  291

seq1  TCATCTCCATGTGCCTACACATCGCTTCTGTTCTGTGCACAAAGGCCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCATGTGCCTACACATCGCTTCTGTTCTGTGCACAAAGGCCATT  341

seq1  TTTTTCTTTGTATGTGTGTGCATGTGTAAGTGTGTGCATCCTGTGCAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGTATGTGTGTGCATGTGTAAGTGTGTGCATCCTGTGCAGGT  391

seq1  CTATATTATACACATGTACAAATGCAACCCAGGTGTGCCAATATGGGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTATACACATGTACAAATGCAACCCAGGTGTGCCAATATGGGTGT  441

seq1  GGAGATCAGAGGGCAATCTCAAGTATCAATACTTGCCTTCCACCTTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCAGAGGGCAATCTCAAGTATCAATACTTGCCTTCCACCTTGTTT  491

seq1  AAGACAGAGTCCCTTTATTGTCTTTTCAGGGCATATGTGAGACTGAGATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGTCCCTTTATTGTCTTTTCAGGGCATATGTGAGACTGAGATT  541

seq1  GGCTAACCCATCAACTTTCTAGAATTTTCTTTCTCCACCCCCATCTCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACCCATCAACTTTCTAGAATTTTCTTTCTCCACCCCCATCTCCCC  591

seq1  AGAGGAGCTCTGGGCATGCAGATGTCTATTACCGCCTCCAGCTTTTATGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTCTGGGCATGCAGATGTCTATTACCGCCTCCAGCTTTTATGG  641

seq1  GGCTTTAGATCTAAGAGCTCGGGTTCTCATACTCCAATGGCAAGTGCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAGATCTAAGAGCTCGGGTTCTCATACTCCAATGGCAAGTGCTTT  691

seq1  TACCCAGTGAGCCATCTCCCAGGCCCTCCCTCCAGTTTTTATATTGGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGTGAGCCATCTCCCAGGCCCTCCCTCCAGTTTTTATATTGGATG  741

seq1  CTTAATGAGAACCATTAAATTTTCTCACATTTCTTGGTGATGCGACAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGAGAACCATTAAATTTTCTCACATTTCTTGGTGATGCGACAGAG  791

seq1  TTTGGAAAAAAAACTTAGAAAATACAGAGCTACGAAGACTTCGTGTGATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAAAAAACTTAGAAAATACAGAGCTACGAAGACTTCGTGTGATC  841

seq1  TCTGGTGTTTTCCTTTTTTAAACAGTTGCCTTTTAAAATGTATGCAACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTTTTCCTTTTTTAAACAGTTGCCTTTTAAAATGTATGCAACAT  891

seq1  GAGAATTC  907
      ||||||||
seq2  GAGAATTC  899

seq1: chr2_117973319_117973967
seq2: B6Ng01-143J19.g_66_722

seq1  GAATTCATCTGAGGCCAGCTCAGATCAACAAGGTTTGATTTATATGGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGAGGCCAGCTCAGATCAACAAGGTTTGATTTATATGGATG  50

seq1  TCCCTCCCCTATGAGAAAGAACACTCACCTAGACTCACAAAAGAATCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCTATGAGAAAGAACACTCACCTAGACTCACAAAAGAATCGGT  100

seq1  GTTCAGCCCTAGGAACTAGAAAGAGGAATTGAGTAACCCCTTGAATGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCCCTAGGAACTAGAAAGAGGAATTGAGTAACCCCTTGAATGGCC  150

seq1  AAGAAATCTTCTCACAGCACCATGTCCAGGAGCCAAGCTGCCCTGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTTCTCACAGCACCATGTCCAGGAGCCAAGCTGCCCTGCCACA  200

seq1  CTCTAATGTGGGATTTAGTTTGTCCATCGGGATCTGCACACATGTGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGTGGGATTTAGTTTGTCCATCGGGATCTGCACACATGTGATAA  250

seq1  TCAGCGCAGGAGAATAAACACTAAAGGCCAAGCTCAGCCAGTAGAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCAGGAGAATAAACACTAAAGGCCAAGCTCAGCCAGTAGAGGGGA  300

seq1  GGACACTGAACAGACTCCTGTGACACCCTGGGGATGTCTCACAACATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGAACAGACTCCTGTGACACCCTGGGGATGTCTCACAACATCAA  350

seq1  GCCATCAGTCACACTTGCCTGCCAGCACTGGCCACATCAGTCACACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAGTCACACTTGCCTGCCAGCACTGGCCACATCAGTCACACCCTC  400

seq1  TTCTGTTTCTCTGTTGTTTTCCTGAGTAATTAAGTGGTAACAGTCAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTCTGTTGTTTTCCTGAGTAATTAAGTGGTAACAGTCAGGCA  450

seq1  TTTCTCCATG-TTCTGCTGTTCCCAACTGAGACAAGAGGCAACAG-TTTC  498
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  TTTCTCCATGTTTCTGCTGTTCCCAACTGAGACAAGAGGCAACAGTTTTC  500

seq1  CTAGTCCTGC-CAAGGTTCTGAGGGTGGAGGGCACAGCAC-CAATGAAC-  545
      |||||||||| ||||||||||||||||||||||||||||| || ||||| 
seq2  CTAGTCCTGCTCAAGGTTCTGAGGGTGGAGGGCACAGCACTCATTGAACT  550

seq1  TCTAAAAATTCGTCTACAAGGC-TCATGGACGAGTACA-GGGACCACAGA  593
      |||||||||||||||||||||| |||||||||||| || |||||||||||
seq2  TCTAAAAATTCGTCTACAAGGCTTCATGGACGAGTTCAGGGGACCACAGA  600

seq1  GCCATGG-CCAGTAGCATCAGTGTTACTGGGAGCAAGTGGTACTTGAGGA  642
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGCCCAGTAGCATCAGTGTTACTGGGAGCAAGTGGTACTTGAGGA  650

seq1  TCCTTGG  649
      |||||||
seq2  TCCTTGG  657