BAC Information

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BAC

Clone NameB6Ng01-144A12
Chromosome2 (Build37)
Map Location 10,851,141 - 10,973,480
singlet/doubletdoublet
Overlap geneLOC100040690
Upstream geneTaf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
Downstream geneLOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144A12.bB6Ng01-144A12.g
ACCDH941814DH941815
length1,1331,101
definitionDH941814|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A12, 5' end.DH941815|Mus musculus domesticus DNA, BAC clone: B6Ng01-144A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,851,141 - 10,852,282)(10,972,369 - 10,973,480)
sequence
gaattcttggtcaatctttaaaaagccgaactttttttctttctttcttt
ttttttaaattagagaggctaatagcatcaaggttctctttcatttactt
atatctgagggaatttccatcaactgacaatgtaaggaattcttatagtc
aaggtgaattctttattgtgtgattggaagctaagcatgatttacatcat
agagttctaattagcagactactatgcaaattttcagtattttcagtaag
tgtgaaaactgcttgctaagaatactgtgttgcttctctatgatatatac
gtattttatataatgtaaatatacatagacacagacacatacgtagacta
ttagtgtaaagtgctaacatttctctgtggaaggggaaatatatagagaa
acctcgagtcatcctttgctgggtttagagaggaagctcaatggagaaag
cacttgccacaggagcataaaggctttgttttggatccccagaacccata
ctgagctaaagatgctagagcacatcccaatggtcctatgctgagatggg
aggtggagagaggaaaatcccagaatgcaatgggacagttagcttattgt
actcaaagatgaacaaattggtcctatcacaggggaaatgaaaacttaca
ctcaaggttgactaccctttgacgtccacatgtaagccatggtgtgtacc
aacaattacaccctacacacagaaacatgtcatcacacacacacacacac
acacacacacacacacacacacatttttaaatccacaattttccaatgag
cttcaagaaattctcaaggatttccctggtgcattctccaaaccttagct
tcacccagggaccacattgttttattcactaactctatatctgacagaga
aatccaaaattcacaaagaactcaagaaattagacaccaaaaaccaaata
actcaattaaaatgaagtacatagttaaacaggattctcaacaaagaacc
tcaaatggctgagaggcacttaaagaaatgttcaacatccttagttatca
ggaaatgcaattaaaacgactctgaaagtccatctaccccatcagatagc
taagatcaaaactcagtgaataggcatatgcta
gaattctggcggcttcttcccttgttgggaacagtccagaatccgagggc
agacccaggaacggatgctcagagagacaaagccaggggaatatgaagga
gcctgaccaatatgctgcagcagttgctactgtcctgaagattagtttgc
ctaattagtttttcctgcagggttagtcaaaggagctcttaatttttatt
tgtaaaaagtacaaagaatttaatttcttattagtggtcagtggggaaaa
ggaagagaaaatggcttcagaatcaccttctaaaacaccaagagatctcc
cagatgcaagagtagagaattttattttgcttggcaaatgtttcatgttc
aacaacatgccaaagctgcatgtttcagatatgacactggctatggcaga
gcccaacctgtcaccatgtgggacagaagtcagggttaaagcataaggtt
ataactcagtggggaagtatttgcttggccggctcctcaaggccctgtgt
ttggaaccagtactgaaagagaaatcagaggtcatcactcactatctgaa
tgggaccttgtaggtgagagagagagagagagagagagagagagagagag
agagagctagaggtccacaatggtccttaattgctcttcacattattatt
ttgagacaaagtctctcaatagtactctcattgaacctgggagaaaatat
cttccctcatccatcactccgtgaggttcagcttcgtcacccagagtaga
gaatatgctgtccccgcgtttcttgctaatgacttgactactgctgtctt
ctgctccaaagaggagaaagtgcaccataattagacagtggatcagtaga
tccagtgggtcagaggtagtcattagttttggctacagtgggtttataaa
gccatctaaaccaatgcactgagagcctattcatttagtgaaatataata
tttttatatttgctctcttgtcttagtgaatatacatcagtgtaataaaa
tattcttagcacaaacagtgtttcatctgatttgtttaagaatctagcta
tccactttactagtgaaatgaaaggctctactacgtccaaaggaaatggg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_10851141_10852282
seq2: B6Ng01-144A12.b_47_1179

seq1  GAATTCTTGGTCAATCTTTAAAAAGCCGAACTTTTTTTCTTTCTTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCAATCTTTAAAAAGCCGAACTTTTTTTCTTTCTTTCTTT  50

seq1  TTTTTTAAATTAGAGAGGCTAATAGCATCAAGGTTCTCTTTCATTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTAGAGAGGCTAATAGCATCAAGGTTCTCTTTCATTTACTT  100

seq1  ATATCTGAGGGAATTTCCATCAACTGACAATGTAAGGAATTCTTATAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGAGGGAATTTCCATCAACTGACAATGTAAGGAATTCTTATAGTC  150

seq1  AAGGTGAATTCTTTATTGTGTGATTGGAAGCTAAGCATGATTTACATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAATTCTTTATTGTGTGATTGGAAGCTAAGCATGATTTACATCAT  200

seq1  AGAGTTCTAATTAGCAGACTACTATGCAAATTTTCAGTATTTTCAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTAATTAGCAGACTACTATGCAAATTTTCAGTATTTTCAGTAAG  250

seq1  TGTGAAAACTGCTTGCTAAGAATACTGTGTTGCTTCTCTATGATATATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAACTGCTTGCTAAGAATACTGTGTTGCTTCTCTATGATATATAC  300

seq1  GTATTTTATATAATGTAAATATACATAGACACAGACACATACGTAGACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTATATAATGTAAATATACATAGACACAGACACATACGTAGACTA  350

seq1  TTAGTGTAAAGTGCTAACATTTCTCTGTGGAAGGGGAAATATATAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTAAAGTGCTAACATTTCTCTGTGGAAGGGGAAATATATAGAGAA  400

seq1  ACCTCGAGTCATCCTTTGCTGGGTTTAGAGAGGAAGCTCAATGGAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGAGTCATCCTTTGCTGGGTTTAGAGAGGAAGCTCAATGGAGAAAG  450

seq1  CACTTGCCACAGGAGCATAAAGGCTTTGTTTTGGATCCCCAGAACCCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCACAGGAGCATAAAGGCTTTGTTTTGGATCCCCAGAACCCATA  500

seq1  CTGAGCTAAAGATGCTAGAGCACATCCCAATGGTCCTATGCTGAGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTAAAGATGCTAGAGCACATCCCAATGGTCCTATGCTGAGATGGG  550

seq1  AGGTGGAGAGAGGAAAATCCCAGAATGCAATGGGACAGTTAGCTTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGAGAGGAAAATCCCAGAATGCAATGGGACAGTTAGCTTATTGT  600

seq1  ACTCAAAGATGAACAAATTGGTCCTATCACAGGGGAAATGAAAACTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGATGAACAAATTGGTCCTATCACAGGGGAAATGAAAACTTACA  650

seq1  CTCAAGGTTGACTACCCTTTGACGTCCACATGTAAGCCATGGTGTGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGTTGACTACCCTTTGACGTCCACATGTAAGCCATGGTGTGTACC  700

seq1  AACAATTACACCCTACACACAGAAACATGTCATCACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTACACCCTACACACAGAAACATGTCATCACACACACACACACAC  750

seq1  ACACACACACACACACACACACATTTTTAAATCCACAATTTTCCAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATTTTTAAATCCACAATTTTCCAATGAG  800

seq1  CTTCAAGAAATTCTCAAGGATTTCCCTGGTGCATTCTCCAAACCTTAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAAATTCTCAAGGATTTCCCTGGTGCATTCTCCAAACCTTAGCT  850

seq1  TCACCCAGGGACCACATTGTTTTATTCACTAACTCTATATCTGACAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGGGACCACATTGTTTTATTCACTAACTCTATATCTGACAGAGA  900

seq1  AATCCAAAATTCACAAAGAACTCAAGAAATTAGACACCAAAAACCAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAAATTCACAAAGAACTCAAGAAATTAGACACCAAAAACCAAATA  950

seq1  ACTCAATTAAAAATGAAGTACATAGTTAAACAGGATTCTCAACAAAGGAA  1000
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ACTCAATT-AAAATGAAGTACATAGTTAAACAGGATTCTCAACAAA-GAA  998

seq1  CCTCAAATGGCTGAGAGGCACTTAAAGAAATGTTCAACATCCTTAGTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATGGCTGAGAGGCACTTAAAGAAATGTTCAACATCCTTAGTTAT  1048

seq1  CAGGGAAATGCAAATTAAAACGACTCTGAAGTTCCATCTTACACCCATCA  1100
      || |||||||| ||||||||||||||||||  |||||| ||| |||||||
seq2  CA-GGAAATGC-AATTAAAACGACTCTGAAAGTCCATC-TAC-CCCATCA  1094

seq1  GAATAGCTAAGATCAAAAACTCAAGTG-ATAGAGCATATGCTA  1142
      | |||||||||||| ||||||| |||| |||| ||||||||||
seq2  G-ATAGCTAAGATC-AAAACTC-AGTGAATAG-GCATATGCTA  1133

seq1: chr2_10972369_10973480
seq2: B6Ng01-144A12.g_67_1167 (reverse)

seq1  TCCCATTTCCTTGTGCCTGAGTAGAGCCTTTCATATCAACTAAGTAAAGT  50
      ||||||||||||  | |  ||||||||||||||| || ||| ||||||||
seq2  TCCCATTTCCTTTGGACGTAGTAGAGCCTTTCATTTC-ACT-AGTAAAGT  48

seq1  -GATAGCTAGATCTTAAAACAAAAATCAGGATGAAAACACTGTTTGGTGC  99
       |||||||||||  | ||||  |||||| |||| ||||||||||| ||||
seq2  GGATAGCTAGATTCTTAAAC--AAATCA-GATG-AAACACTGTTT-GTGC  93

seq1  TAAGATATATTTTATTACACTTGATGTAATATTCACTAAGACAAGAGAGC  149
      ||||| |||||||||||||| |||||| ||||||||||||||||||||||
seq2  TAAGA-ATATTTTATTACAC-TGATGT-ATATTCACTAAGACAAGAGAGC  140

seq1  AAATATAAAAATATTATATTTCACTAAATGAATAGGCTTCTCAGTGCATT  199
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATATAAAAATATTATATTTCACTAAATGAATAGGC-TCTCAGTGCATT  189

seq1  GGTTTAGATGGCTTTTATAAACCCACTGTAGCCAAAACTAATGACTACCT  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGATGGC-TTTATAAACCCACTGTAGCCAAAACTAATGACTACCT  238

seq1  CTGACCCACTGGATCTACTGATCCACTGTCTAATTATGGTGCACTTTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCACTGGATCTACTGATCCACTGTCTAATTATGGTGCACTTTCTC  288

seq1  CTCTTTGGAGCAGAAGACAGCAGTAGTCAAGTCATTAGCAAGAAACGCGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGGAGCAGAAGACAGCAGTAGTCAAGTCATTAGCAAGAAACGCGG  338

seq1  GGACAGCATATTCTCTACTCTGGGTGACGAAGCTGAACCTCACGGAGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCATATTCTCTACTCTGGGTGACGAAGCTGAACCTCACGGAGTGA  388

seq1  TGGATGAGGGAAGATATTTTCTCCCAGGTTCAATGAGAGTACTATTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAGGGAAGATATTTTCTCCCAGGTTCAATGAGAGTACTATTGAGA  438

seq1  GACTTTGTCTCAAAATAATAATGTGAAGAGCAATTAAGGACCATTGTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTCTCAAAATAATAATGTGAAGAGCAATTAAGGACCATTGTGGA  488

seq1  CCTCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAC  538

seq1  CTACAAGGTCCCATTCAGATAGTGAGTGATGACCTCTGATTTCTCTTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGTCCCATTCAGATAGTGAGTGATGACCTCTGATTTCTCTTTCA  588

seq1  GTACTGGTTCCAAACACAGGGCCTTGAGGAGCCGGCCAAGCAAATACTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTCCAAACACAGGGCCTTGAGGAGCCGGCCAAGCAAATACTTC  638

seq1  CCCACTGAGTTATAACCTTATGCTTTAACCCTGACTTCTGTCCCACATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGTTATAACCTTATGCTTTAACCCTGACTTCTGTCCCACATGG  688

seq1  TGACAGGTTGGGCTCTGCCATAGCCAGTGTCATATCTGAAACATGCAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGTTGGGCTCTGCCATAGCCAGTGTCATATCTGAAACATGCAGCT  738

seq1  TTGGCATGTTGTTGAACATGAAACATTTGCCAAGCAAAATAAAATTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATGTTGTTGAACATGAAACATTTGCCAAGCAAAATAAAATTCTCT  788

seq1  ACTCTTGCATCTGGGAGATCTCTTGGTGTTTTAGAAGGTGATTCTGAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCATCTGGGAGATCTCTTGGTGTTTTAGAAGGTGATTCTGAAGC  838

seq1  CATTTTCTCTTCCTTTTCCCCACTGACCACTAATAAGAAATTAAATTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCTTCCTTTTCCCCACTGACCACTAATAAGAAATTAAATTCTT  888

seq1  TGTACTTTTTACAAATAAAAATTAAGAGCTCCTTTGACTAACCCTGCAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTTACAAATAAAAATTAAGAGCTCCTTTGACTAACCCTGCAGG  938

seq1  AAAAACTAATTAGGCAAACTAATCTTCAGGACAGTAGCAACTGCTGCAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAATTAGGCAAACTAATCTTCAGGACAGTAGCAACTGCTGCAGC  988

seq1  ATATTGGTCAGGCTCCTTCATATTCCCCTGGCTTTGTCTCTCTGAGCATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTCAGGCTCCTTCATATTCCCCTGGCTTTGTCTCTCTGAGCATC  1038

seq1  CGTTCCTGGGTCTGCCCTCGGATTCTGGACTGTTCCCAACAAGGGAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTGGGTCTGCCCTCGGATTCTGGACTGTTCCCAACAAGGGAAGAA  1088

seq1  GCCGCCAGAATTC  1112
      |||||||||||||
seq2  GCCGCCAGAATTC  1101