BAC Information

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BAC

Clone NameB6Ng01-144B09
Chromosome9 (Build37)2 (Build37)
Map Location 106,953,854 - 106,954,94350,240,953 - 50,241,471
singlet/doubletsingletsinglet
Overlap geneDock3
Upstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144B09.bB6Ng01-144B09.g
ACCDH941854DH941855
length1,082945
definitionDH941854|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B09, 5' end.DH941855|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,953,854 - 106,954,943)(50,240,953 - 50,241,471)
sequence
gaattcatccagattctagagtgctactttttcaactacagacttcatat
tgggagtctatcttgtaagattataacaagtttgttcacctcatctgttc
atctcattttaagtttggtaacatctttgtttgcataaatcatattctaa
gaaaaaagaactgaaggggaattagtctgtgtgatgatttagacaccgaa
tctcatccaaagacctacatgttgaaggtgtgtttcgtagagtagtgata
ttaagaggacctgtacctttaagaggttggaaccttagtcctttgagagg
atgtgccctcttgatatcctggtaaatgaattttctgaacttaggtcaga
agagtcattgtgctctaatttatgctctatgcacagaagttacaatttct
tataaagaacataaaacgtttaaaaaacatctgagtttaaactgttttta
tccatatttgtagaatgacacattgactcctttttacactgactggcatt
gtctgtcccacctgagcagtgaactcagaacacagagataataaacatgg
gacaacagcatctgaccttactcatggatgacagaaggcaaacccttaac
cacaggctacagaacagaactaaagtcaaagtttcactctgagcctgggc
ttctgagactttgaacaatgggctagaggcccatgtctcaggacagttaa
gacagctggagtttaccagaacttaatgaatggtctaaaattagctgcct
gagcacctgcagataagctctagttgcattataacaacgccctcttctgc
agaaggaaacaaaatgttaactttaataaacagattgctcacctatagtt
taaaaagaaaatttctctccagtggctcttaagttctcagcccaaatcat
ctcatttaagtagaaagaaagcttaactctcaggacagagtcctctactt
caattacagaagtagctgatttttaaaaagtcttttacacagggaaattt
ggatgctgagtaaactccagtagattatgaggatgttttagctttctttg
catagcatcatataagatgaccagcaaaggtt
gaattcagagcgccatcttgtatactggatctctcagagaccagtccgca
caggagtgtgtgggccgcagaagcaacagagcttcttggacagggtccct
tcaggccttcatcctcagccagggggcagagctgagacccagacctctat
gtaccttccctgcaagaggagacttgcctgcagagagtgctctgaccaat
gggactcaggagagagttggactcccaggagtgctgacagaagctaacag
aatcacaggaggaacaagctccagccacagacagctagaacatctaacac
cagagattaccagatggtgaaaggcaaacctaagaatcttactaacaaac
caagaccactcggcatcatcagaacccagtactcccaccacagcaagtcc
tggataccccaacacacccgaaaagcaagatttggatttaaaatcatatc
ttatgatgctggtagaggattttaagaaggacattaataactcaaagaaa
tacaggagaacactgctaaacaggtagaagtccttaaagaggaagcacaa
aaattccttaaagaattacaggaaaacacaatcaaccaggtgatggaatt
aaacaaaatcatccaggatctaaaaatggaagtagaaacaataaagaaaa
cccaaagggagacaactctggagatagaaaccctaggaaagaaatcagga
accacagatgcaagcatcagcaacagataataaagtacttcagaatatca
tggatattaaatgaataacctgtcataatactgtgatttgactgggtgaa
ctcacaattattttgtttctgttagataacctgtagctatagttgtctgg
ggtcccacttggccatcttggcagatggccacctccttcactacttcttc
aaaaagatattgaaaccataacattgtgcattagtttgaaacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106953854_106954943
seq2: B6Ng01-144B09.b_47_1128

seq1  GAATTCATCCAGATTCTAGAGTGCTACTTTTTCAACTACAGACTTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCAGATTCTAGAGTGCTACTTTTTCAACTACAGACTTCATAT  50

seq1  TGGGAGTCTATCTTGTAAGATTATAACAAGTTTGTTCACCTCATCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCTATCTTGTAAGATTATAACAAGTTTGTTCACCTCATCTGTTC  100

seq1  ATCTCATTTTAAGTTTGGTAACATCTTTGTTTGCATAAATCATATTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTTTAAGTTTGGTAACATCTTTGTTTGCATAAATCATATTCTAA  150

seq1  GAAAAAAGAACTGAAGGGGAATTAGTCTGTGTGATGATTTAGACACCGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAACTGAAGGGGAATTAGTCTGTGTGATGATTTAGACACCGAA  200

seq1  TCTCATCCAAAGACCTACATGTTGAAGGTGTGTTTCGTAGAGTAGTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCAAAGACCTACATGTTGAAGGTGTGTTTCGTAGAGTAGTGATA  250

seq1  TTAAGAGGACCTGTACCTTTAAGAGGTTGGAACCTTAGTCCTTTGAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGACCTGTACCTTTAAGAGGTTGGAACCTTAGTCCTTTGAGAGG  300

seq1  ATGTGCCCTCTTGATATCCTGGTAAATGAATTTTCTGAACTTAGGTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCCTCTTGATATCCTGGTAAATGAATTTTCTGAACTTAGGTCAGA  350

seq1  AGAGTCATTGTGCTCTAATTTATGCTCTATGCACAGAAGTTACAATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATTGTGCTCTAATTTATGCTCTATGCACAGAAGTTACAATTTCT  400

seq1  TATAAAGAACATAAAACGTTTAAAAAACATCTGAGTTTAAACTGTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAACATAAAACGTTTAAAAAACATCTGAGTTTAAACTGTTTTTA  450

seq1  TCCATATTTGTAGAATGACACATTGACTCCTTTTTACACTGACTGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTTGTAGAATGACACATTGACTCCTTTTTACACTGACTGGCATT  500

seq1  GTCTGTCCCACCTGAGCAGTGAACTCAGAACACAGAGATAATAAACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCCACCTGAGCAGTGAACTCAGAACACAGAGATAATAAACATGG  550

seq1  GACAACAGCATCTGACCTTACTCATGGATGACAGAAGGCAAACCCTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGCATCTGACCTTACTCATGGATGACAGAAGGCAAACCCTTAAC  600

seq1  CACAGGCTACAGAACAGAACTAAAGTCAAAGTTTCACTCTGAGCCTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTACAGAACAGAACTAAAGTCAAAGTTTCACTCTGAGCCTGGGC  650

seq1  TTCTGAGACTTTGAACAATGGGCTAGAGGCCCATGTCTCAGGACAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGACTTTGAACAATGGGCTAGAGGCCCATGTCTCAGGACAGTTAA  700

seq1  GACAGCTGGAGTTTACCAGAACTTAATGAATGGTCTAAAATTAGCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGAGTTTACCAGAACTTAATGAATGGTCTAAAATTAGCTGCCT  750

seq1  GAGCACCTGCAGATAAGCTCTAGTTGCATTATAACAACGCCCTCTTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCTGCAGATAAGCTCTAGTTGCATTATAACAACGCCCTCTTCTGC  800

seq1  AGAAGGAAACAAAATGTTAACTTTAATAAACAGATTGCTCACCTATAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAACAAAATGTTAACTTTAATAAACAGATTGCTCACCTATAGTT  850

seq1  TAAAAAGAAAATTTCTCTCCAGTGGCTCTTAAGTTCTCAGGCCCAAATCA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAAAGAAAATTTCTCTCCAGTGGCTCTTAAGTTCTCA-GCCCAAATCA  899

seq1  TCTCATTTAAGTAGAAAGAAAGCTTAACTCTCA-GACAGAGTCCTCTACT  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCATTTAAGTAGAAAGAAAGCTTAACTCTCAGGACAGAGTCCTCTACT  949

seq1  TCAATTACAGAAGTAGCTGATTTTTTAAAAAAGTCTTTTACACAGGGATA  999
      |||||||||||||||||||||||||  ||||||||||||||||||||| |
seq2  TCAATTACAGAAGTAGCTGATTTTT--AAAAAGTCTTTTACACAGGGA-A  996

seq1  TTTTGGATGCTGAGTAAACTCCAGTAGATTATGAGGATGTTTTAGCTTTC  1049
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATGCTGAGTAAACTCCAGTAGATTATGAGGATGTTTTAGCTTTC  1046

seq1  TTTGCATAGCATCCATATAAAGATGACCAAGCATAAAGGTT  1090
      |||||||||||| ||||| ||||||||| |||  |||||||
seq2  TTTGCATAGCAT-CATAT-AAGATGACC-AGC--AAAGGTT  1082

seq1: chr2_50240953_50241471
seq2: B6Ng01-144B09.g_81_615 (reverse)

seq1  TGCTTCCTCTTTAAGTACTTCTACCTGTTTAGCAGTGTTTTCCTGTATTT  50
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TGCTTCCTCTTTAAGGACTTCTACCTGTTTAGCAGTGTTCTCCTGTATTT  50

seq1  CTTTAAGGCAGTTATTAATGCCCTTCTTAAAATCCCCTACCAGCATCATG  100
      ||||     ||||||||||| |||||||||||||| ||||||||||||| 
seq2  CTTT----GAGTTATTAATGTCCTTCTTAAAATCCTCTACCAGCATCATA  96

seq1  AGATATGATTTTAAATCTGAATCTTGCTTTTCGTGTGTGTTGGGGTATCC  150
      |||||||||||||||||  |||||||||||||| ||||||||||||||||
seq2  AGATATGATTTTAAATCCAAATCTTGCTTTTCGGGTGTGTTGGGGTATCC  146

seq1  AGGACTCTCTGTGGTGAGCGTACTGGGTTCTGATGATGCAGACTGGTCTT  200
      ||||||  |||||||| | |||||||||||||||||||| || |||||||
seq2  AGGACTTGCTGTGGTGGGAGTACTGGGTTCTGATGATGCCGAGTGGTCTT  196

seq1  GGTTTCTGTTAATAAGATTCTTACCTTTGCCTTTCATCATCTGGTAATCT  250
      ||||  ||||| |||||||||||  ||||||||||| |||||||||||||
seq2  GGTT--TGTTAGTAAGATTCTTAGGTTTGCCTTTCACCATCTGGTAATCT  244

seq1  TTGGTGTTAGATATGGTCTAGCTGTCTCTGGCTGGAGCTTGTTTCTCCTG  300
       |||||||||  ||| ||||||||||| ||||||||||||||| ||||||
seq2  CTGGTGTTAG--ATGTTCTAGCTGTCTGTGGCTGGAGCTTGTTCCTCCTG  292

seq1  TGATTCTGTTAGCCTCTGTCAGCACTCCTGGGAGTTCCAACTCTCTCCTG  350
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TGATTCTGTTAGCTTCTGTCAGCACTCCTGGGAG-TCCAACTCTCTCCTG  341

seq1  AGTCTGAGTGGTCAGAACACTCTCTGCAGGCAAGCTCTCCTCTGGCAGGG  400
      ||||  | |||||||| ||||||||||||||||| |||||||| ||||||
seq2  AGTCCCATTGGTCAGAGCACTCTCTGCAGGCAAG-TCTCCTCTTGCAGGG  390

seq1  AAGGTGCA--------TGGGTCTCAGCTCCACCTCCTGGCTGAGGATGAA  442
      ||||| ||        |||||||||||||  || ||||||||||||||||
seq2  AAGGTACATAGAGGTCTGGGTCTCAGCTCTGCCCCCTGGCTGAGGATGAA  440

seq1  GGCCCAAAGG------------GAAACTCTGTTGCTTCTGTGGC------  474
      ||||  ||||            ||| |||||||||||||| |||      
seq2  GGCCTGAAGGGACCCTGTCCAAGAAGCTCTGTTGCTTCTGCGGCCCACAC  490

seq1  -CTCCTGAAAGGACTGGTCTCTGAGAGAACCCAGAATACAAGATGG  519
       ||||||   ||||||||||||||||| | |||| |||||||||||
seq2  ACTCCTGTGCGGACTGGTCTCTGAGAG-ATCCAGTATACAAGATGG  535