BAC Information

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BAC

Clone NameB6Ng01-144B11
Chromosome2 (Build37)
Map Location 82,557,775 - 82,669,387
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144B11.bB6Ng01-144B11.g
ACCDH941858DH941859
length1,1561,096
definitionDH941858|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B11, 5' end.DH941859|Mus musculus domesticus DNA, BAC clone: B6Ng01-144B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,668,211 - 82,669,387)(82,557,775 - 82,558,913)
sequence
gaattcaatgagcatctaaagtatgctataaatttttgtactataaatct
gtatattttgtccatggatgacctggaagtttcttcttaattacactaga
gaagagatggctttacctactaataagcatgattaggagtggaataaaaa
ctgagaacaggtgtttcagtggtctttctgaaaaaccttaacagttaatt
tccatctggctaaaactgtgcatggaagacttggctgttattctccaggg
aaagtagcccttaaaaacagacaatgaaaaaaaaaaccaatagcatattg
attaatgatgatttatttaatcttagtaaatattaaaacatctaactgta
tgatagagttgtggtaaatatatcacaggatttattttatgaagtgacac
tctttattgataaattggcttcatgttcatattcaattttggaggattct
gcctgactgctgtgccatctgctttcagatcaatgtgctgtaattgactg
atgggaattttaaaacagaaaatccagctgttttacatttgtcctctttg
accataagttaaattaccatattatacatctgcataattgcattcatttt
tagtggagtgtgaccttgtagatggtagtgtcttcagtaataagatgata
ggagatgatgtttacagagattttagattaataacaggacaaataaaata
atgctacagacttaaatctcaaaccagcctattttaaatgccaagactct
ggagccatgaacaatgtctaattctgggaactcatccaagagtaaggctg
ccataacagcagtgtgtgcacacagcctatgccacctatgccacgtgaga
ggtcaaactcattcagttgtactcatgcttgtagttagcacatgaattat
gtacaatttatgacatttgtcttcaaaagaaatttccatgtgatctatct
aataaaatttaatcattatattaatttactacctatcacaaaaaattaaa
gaacataaacactatgaggcactactgaccatatagtagctaggctttat
caaacagtaatagtagtatgatgattcagaagaaattgcagctttgtgca
ctgtgcagctctttcgaaagttaccgtgaggtatgaacagtaacatcttt
tcatgc
gaattcctgcttctcagctagaagagataccacttagacttctgggtaag
tgggtccattctcttcccatatgcaaataattcttcctgtctcttgatac
cacctcagatatcagatgctaaccactggcattcctaattctaggtagac
atgttctgctaagttaatgtttccaaaggttgtactgatgttagatcagt
gcagatgtggacaatgaacatctactactggaactaaaatcagctcaagt
taatttgactctgaatctgcaacattcaaactcactgcaatcacaaagtt
ttaatcaattaatttgccttgtagaatctttgtcataagtgtagtttttt
gttttctgagaattttgtttttagtttgtttcctttaaaatgagataaga
caaaatttattaaatatttgagtcagatttagtccagttatttcaaggga
cacatacattgaaaggctatcatgggctgaactgcacatggctcatgggt
taagtacactgactgctcttccagatgtcctgggtctaattcccagaaac
cacatggtggctcacaaacatctgtaatgggattcaatgcactcttctgg
tgtatctgaagacagagctacagtgtacttatatacataaaataaataaa
tctttaaaaaaaaaaaagaaaagttatcatatttctgtcaactttctcaa
tgtaccatttttctcctgttcattctttatcctttttcttttttttgttt
ttaatctctgcaatatgcaatatatatgacatggggttttatttataaca
ttcttcccaatccaaggctgaagggttgagaagcctagactttagcagat
ccagttctggcaaacatagtgttgtgagttcatgattgcaagaattcttc
ataccagagatacacttgtagcccttctctatcacgctttctatatcttt
tactccctctagtgtgctcctaagcctcgagtagatttgtaatattttgt
tagatgtcactagcagtccacaattctagtactgagtagacatgagtctg
ctcctgctattattttgcacaagaattttgatcagctgaacagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82668211_82669387
seq2: B6Ng01-144B11.b_46_1201 (reverse)

seq1  GCATGGAAAAAGGATGTTACTGTTTCATATACTTCACGGTTACTTTTGGA  50
      |||||   ||| ||||||||||||    |||| ||||||| || ||| ||
seq2  GCATG---AAAAGATGTTACTGTT---CATACCTCACGGTAAC-TTTCGA  43

seq1  AAGAGCTGCACAGTGCACAAAGGCTTCCATTTCTTCTTGAATTCATCAAT  100
      ||||||||||||||||||||| ||| | |||||||| |||| ||||| ||
seq2  AAGAGCTGCACAGTGCACAAA-GCTGCAATTTCTTC-TGAA-TCATC-AT  89

seq1  ACTTACTATTTACTGTTTTGATTAAAGCCTAGCTACTATATGGTCAGTAG  150
      || ||||| |||||| ||||| ||||||||||||||||||||||||||||
seq2  AC-TACTA-TTACTG-TTTGA-TAAAGCCTAGCTACTATATGGTCAGTAG  135

seq1  TGCCTCATAGTGTTTTATGTTCTTTAATTTTTTTGTTGATTAGGTAGGTA  200
      |||||||||||| ||||||||||||||||||||   ||| |||||| |||
seq2  TGCCTCATAGTG-TTTATGTTCTTTAATTTTTT--GTGA-TAGGTA-GTA  180

seq1  AATTAATATAATGGATTAAATTTTATTAGATAGATCACATGGAAATTTCT  250
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATTAATATAAT-GATTAAATTTTATTAGATAGATCACATGGAAATTTCT  229

seq1  TTTGAAGACAAATGTCATAAATTGTACATAATTCATGTGCTAACTACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGACAAATGTCATAAATTGTACATAATTCATGTGCTAACTACAAG  279

seq1  CATGAGTACAACTGAATGAGTTTGACCTCTCACGTGGCATAGGTGGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTACAACTGAATGAGTTTGACCTCTCACGTGGCATAGGTGGCATA  329

seq1  GGCTGTGTGCACACACTGCTGTTATGGCAGCCTTACTCTTGGATGAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTGCACACACTGCTGTTATGGCAGCCTTACTCTTGGATGAGTTC  379

seq1  CCAGAATTAGACATTGTTCATGGCTCCAGAGTCTTGGCATTTAAAATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATTAGACATTGTTCATGGCTCCAGAGTCTTGGCATTTAAAATAGG  429

seq1  CTGGTTTGAGATTTAAGTCTGTAGCATTATTTTATTTGTCCTGTTATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGAGATTTAAGTCTGTAGCATTATTTTATTTGTCCTGTTATTAA  479

seq1  TCTAAAATCTCTGTAAACATCATCTCCTATCATCTTATTACTGAAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATCTCTGTAAACATCATCTCCTATCATCTTATTACTGAAGACAC  529

seq1  TACCATCTACAAGGTCACACTCCACTAAAAATGAATGCAATTATGCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTACAAGGTCACACTCCACTAAAAATGAATGCAATTATGCAGAT  579

seq1  GTATAATATGGTAATTTAACTTATGGTCAAAGAGGACAAATGTAAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATATGGTAATTTAACTTATGGTCAAAGAGGACAAATGTAAAACAG  629

seq1  CTGGATTTTCTGTTTTAAAATTCCCATCAGTCAATTACAGCACATTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTTCTGTTTTAAAATTCCCATCAGTCAATTACAGCACATTGATC  679

seq1  TGAAAGCAGATGGCACAGCAGTCAGGCAGAATCCTCCAAAATTGAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGATGGCACAGCAGTCAGGCAGAATCCTCCAAAATTGAATATG  729

seq1  AACATGAAGCCAATTTATCAATAAAGAGTGTCACTTCATAAAATAAATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAGCCAATTTATCAATAAAGAGTGTCACTTCATAAAATAAATCC  779

seq1  TGTGATATATTTACCACAACTCTATCATACAGTTAGATGTTTTAATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATATTTACCACAACTCTATCATACAGTTAGATGTTTTAATATTT  829

seq1  ACTAAGATTAAATAAATCATCATTAATCAATATGCTATTGGTTTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATTAAATAAATCATCATTAATCAATATGCTATTGGTTTTTTTTT  879

seq1  TCATTGTCTGTTTTTAAGGGCTACTTTCCCTGGAGAATAACAGCCAAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTCTGTTTTTAAGGGCTACTTTCCCTGGAGAATAACAGCCAAGTC  929

seq1  TTCCATGCACAGTTTTAGCCAGATGGAAATTAACTGTTAAGGTTTTTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCACAGTTTTAGCCAGATGGAAATTAACTGTTAAGGTTTTTCAG  979

seq1  AAAGACCACTGAAACACCTGTTCTCAGTTTTTATTCCACTCCTAATCATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCACTGAAACACCTGTTCTCAGTTTTTATTCCACTCCTAATCATG  1029

seq1  CTTATTAGTAGGTAAAGCCATCTCTTCTCTAGTGTAATTAAGAAGAAACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGTAGGTAAAGCCATCTCTTCTCTAGTGTAATTAAGAAGAAACT  1079

seq1  TCCAGGTCATCCATGGACAAAATATACAGATTTATAGTACAAAAATTTAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCATCCATGGACAAAATATACAGATTTATAGTACAAAAATTTAT  1129

seq1  AGCATACTTTAGATGCTCATTGAATTC  1177
      |||||||||||||||||||||||||||
seq2  AGCATACTTTAGATGCTCATTGAATTC  1156

seq1: chr2_82557775_82558913
seq2: B6Ng01-144B11.g_69_1164

seq1  GAATTCCTGCTTCTCAGCTAGAAGAGATACCACTTAGACTTCTGGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTCTCAGCTAGAAGAGATACCACTTAGACTTCTGGGTAAG  50

seq1  TGGGTCCATTCTCTTCCCATATGCAAATAATTCTTCCTGTCTCTTGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCATTCTCTTCCCATATGCAAATAATTCTTCCTGTCTCTTGATAC  100

seq1  CACCTCAGATATCAGATGCTAACCACTGGCATTCCTAATTCTAGGTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGATATCAGATGCTAACCACTGGCATTCCTAATTCTAGGTAGAC  150

seq1  ATGTTCTGCTAAGTTAATGTTTCCAAAGGTTGTACTGATGTTAGATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGCTAAGTTAATGTTTCCAAAGGTTGTACTGATGTTAGATCAGT  200

seq1  GCAGATGTGGACAATGAACATCTACTACTGGAACTAAAATCAGCTCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTGGACAATGAACATCTACTACTGGAACTAAAATCAGCTCAAGT  250

seq1  TAATTTGACTCTGAATCTGCAACATTCAAACTCACTGCAATCACAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGACTCTGAATCTGCAACATTCAAACTCACTGCAATCACAAAGTT  300

seq1  TTAATCAATTAATTTGCCTTGTAGAATCTTTGTCATAAGTGTAGTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAATTAATTTGCCTTGTAGAATCTTTGTCATAAGTGTAGTTTTTT  350

seq1  GTTTTCTGAGAATTTTGTTTTTAGTTTGTTTCCTTTAAAATGAGATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGAGAATTTTGTTTTTAGTTTGTTTCCTTTAAAATGAGATAAGA  400

seq1  CAAAATTTATTAAATATTTGAGTCAGATTTAGTCCAGTTATTTCAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTATTAAATATTTGAGTCAGATTTAGTCCAGTTATTTCAAGGGA  450

seq1  CACATACATTGAAAGGCTATCATGGGCTGAACTGCACATGGCTCATGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATTGAAAGGCTATCATGGGCTGAACTGCACATGGCTCATGGGT  500

seq1  TAAGTACACTGACTGCTCTTCCAGATGTCCTGGGTCTAATTCCCAGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACACTGACTGCTCTTCCAGATGTCCTGGGTCTAATTCCCAGAAAC  550

seq1  CACATGGTGGCTCACAAACATCTGTAATGGGATTCAATGCACTCTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGGCTCACAAACATCTGTAATGGGATTCAATGCACTCTTCTGG  600

seq1  TGTATCTGAAGACAGAGCTACAGTGTACTTATATACATAAAATAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGAAGACAGAGCTACAGTGTACTTATATACATAAAATAAATAAA  650

seq1  TCTTTAAAAAAAAAAAAGAAAAGTTATCATATTTCTGTCAACTTTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAAAAAAAAAAGAAAAGTTATCATATTTCTGTCAACTTTCTCAA  700

seq1  TGTACCATTTTTCTCCTGTTCATTCTTTATCCTTTTTCTTTTTTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCATTTTTCTCCTGTTCATTCTTTATCCTTTTTCTTTTTTTTGTTT  750

seq1  TTAATCTCTGCAATATGCAATATATATGACATGGGGTTTTATTTATAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCTGCAATATGCAATATATATGACATGGGGTTTTATTTATAACA  800

seq1  TTCTTCCCAATCCAAGGCTGAAGGGTTGAGAAGCCTAGACTTTAGCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCAATCCAAGGCTGAAGGGTTGAGAAGCCTAGACTTTAGCAGAT  850

seq1  CCAGTTCTGGCAAACATAGTTGTTGTGAGTTCATGATTGCAAAGAATTCT  900
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CCAGTTCTGGCAAACATAG-TGTTGTGAGTTCATGATTGC-AAGAATTCT  898

seq1  TCATAACCAGAGGATAACACTTGGTAGCCCTTCTTCTTATCACGCTTTTC  950
      |||| |||||| ||| |||||| |||||||||||   |||||||||||  
seq2  TCAT-ACCAGA-GAT-ACACTT-GTAGCCCTTCT--CTATCACGCTTT--  940

seq1  TTATATTCTTTTTACTCCCTCTTAGGTGGTGCTCCCTAAGCCCTCGAGTA  1000
       |||||   |||||||||||| |||   ||||| |||||| |||||||||
seq2  CTATAT--CTTTTACTCCCTC-TAG--TGTGCT-CCTAAG-CCTCGAGTA  983

seq1  GATTTTGTAAATATTTTGTTTAGAATTGTACACTTAGCAGTCCACATATT  1050
      || ||||| ||||||||| |||||  ||| ||| |||||||||||| |||
seq2  GA-TTTGT-AATATTTTG-TTAGA--TGT-CAC-TAGCAGTCCACA-ATT  1025

seq1  CTTAGTACCTTGAGTAGACATGAGTCTCTGCTTTCACTGCTATTTATTTT  1100
      | ||||||  ||||||||||||||  ||||||    ||||||||   |||
seq2  C-TAGTAC--TGAGTAGACATGAG--TCTGCT---CCTGCTATT--ATTT  1065

seq1  TGCACAGAGAAATTTTTTGATCAAAGCTGAGACCAGCAC  1139
      |||||| ||||   ||||||||  ||||  || ||||||
seq2  TGCACA-AGAA---TTTTGATC--AGCT--GAACAGCAC  1096