BAC Information

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BAC

Clone NameB6Ng01-144G12
Chromosome2 (Build37)9 (Build37)
Map Location 142,776,681 - 142,777,69832,839,783 - 32,840,694
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144G12.bB6Ng01-144G12.g
ACCDH942091DH942092
length984914
definitionDH942091|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G12, 5' end.DH942092|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,681 - 142,777,698)(32,839,783 - 32,840,694)
sequence
gaattctttgttcagttctgagccccattttttaatggggttattcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttatgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgtgtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccaagatattttatatatt
tgtgactatttagaaggtgttgtttccctatttc
gaattctctgacagatacaacagctctgctatattcacttactgaaaagc
gtgccttcaggagaagatgctgacaatttcattgacagattccagagcct
aggttcaaattatccctgcattgatttcttctatttatatttactttgtg
gcaatctgcatatatggaaacattttgaattcaactttatttttacttta
gttcataacacaagaatgtcacagaatcattgaatgttaagtataaatat
cttagaaataatctagtccatactcctacttaatagacaaggaaagtaga
gaataaaatgattgctaacattggaactgggccagcagctatgttttctg
acacacaaatgtatctttcccttgcaacttcttcttccccttgtcaatca
tttcctacctcctcccgctctggaaaattgactgattaagctaccacagg
gggagctaaacgagctcctgggatgaagggagatgattatggatggaatg
gaagaaattatggggaaacggagttgctacattctgttctggatcccagc
cagaagcaaaagcatttaggtctcaaaaattagggtgaccagccacatcc
tccgatttggggagccccctaggaactctggcacaatcaaaactaacatg
tttccacttatggtcacatatgtttcaaatatgcaactttttgagagaaa
aacaacaacaacaaaactaagtatccaagaaggaaaaaacttttacttcc
taagcctggtaggttgtatttcccttacaagaaggatagcttatttttca
taaaaatcaaagcaataaattaatgtcccagattgtgagacatactgaga
aagtatctcagatcgttagctgatccaggatactggttttccttagaaag
caaaactttccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776681_142777698
seq2: B6Ng01-144G12.b_52_609 (reverse)

seq1  CAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACAC  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAGACACAGAAATGAACCCACACAC  50

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGA  100

seq1  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTTGTTATCATGT  150

seq1  AGAAGAATGGGAATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGCGAATTGATCCATACTTATCTCCTTGTACTAAGGTCAAATC  200

seq1  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAG  250

seq1  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGACAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTC  300

seq1  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATG  350

seq1  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATA  400
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGACCTAATGAAACTCCAAAGTTTCTGCAAGGCATAAGACACCGTCAATA  400

seq1  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAA  450

seq1  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  500

seq1  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCACAAAACCATC  550
      |||||||||||| ||||||||||||||||||||||||||| ||       
seq2  CTTCAGAAAATCGAATAACCCCATTAAAAAATGGGGCTCAGAA-------  543

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  600
           ||| |||||    |||                             
seq2  ---CTGAACAAAGA----ATTC----------------------------  558

seq1  GTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  650
                                                        
seq2  --------------------------------------------------  558

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  700
                                                        
seq2  --------------------------------------------------  558

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  750
                                                        
seq2  --------------------------------------------------  558

seq1  GGAAAAATTCCTGAACAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAA  800
                                                        
seq2  --------------------------------------------------  558

seq1  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  850
                                                        
seq2  --------------------------------------------------  558

seq1  ACTGTCTATAAGACAAAAAGACCACCAACAGACTGGGAAAGGATCTTTAC  900
                                                        
seq2  --------------------------------------------------  558

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  950
                                                        
seq2  --------------------------------------------------  558

seq1  AGAAGGTGGACCTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  1000
                                                        
seq2  --------------------------------------------------  558

seq1  GAACTGAACAAAGAATTC  1018
                        
seq2  ------------------  558

seq1: chr9_32839783_32840694
seq2: B6Ng01-144G12.g_68_981

seq1  GAATTCTCTGACAGATACAACAGCTCTGCTATATTCACTTACTGAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGACAGATACAACAGCTCTGCTATATTCACTTACTGAAAAGC  50

seq1  GTGCCTTCAGGAGAAGATGCTGACAATTTCATTGACAGATTCCAGAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTCAGGAGAAGATGCTGACAATTTCATTGACAGATTCCAGAGCCT  100

seq1  AGGTTCAAATTATCCCTGCATTGATTTCTTCTATTTATATTTACTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAAATTATCCCTGCATTGATTTCTTCTATTTATATTTACTTTGTG  150

seq1  GCAATCTGCATATATGGAAACATTTTGAATTCAACTTTATTTTTACTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGCATATATGGAAACATTTTGAATTCAACTTTATTTTTACTTTA  200

seq1  GTTCATAACACAAGAATGTCACAGAATCATTGAATGTTAAGTATAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAACACAAGAATGTCACAGAATCATTGAATGTTAAGTATAAATAT  250

seq1  CTTAGAAATAATCTAGTCCATACTCCTACTTAATAGACAAGGAAAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAATAATCTAGTCCATACTCCTACTTAATAGACAAGGAAAGTAGA  300

seq1  GAATAAAATGATTGCTAACATTGGAACTGGGCCAGCAGCTATGTTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATGATTGCTAACATTGGAACTGGGCCAGCAGCTATGTTTTCTG  350

seq1  ACACACAAATGTATCTTTCCCTTGCAACTTCTTCTTCCCCTTGTCAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAATGTATCTTTCCCTTGCAACTTCTTCTTCCCCTTGTCAATCA  400

seq1  TTTCCTACCTCCTCCCGCTCTGGAAAATTGACTGATTAAGCTACCACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACCTCCTCCCGCTCTGGAAAATTGACTGATTAAGCTACCACAGG  450

seq1  GGGAGCTAAACGAGCTCCTGGGATGAAGGGAGATGATTATGGATGGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAAACGAGCTCCTGGGATGAAGGGAGATGATTATGGATGGAATG  500

seq1  GAAGAAATTATGGGGAAACGGAGTTGCTACATTCTGTTCTGGATCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTATGGGGAAACGGAGTTGCTACATTCTGTTCTGGATCCCAGC  550

seq1  CAGAAGCAAAAGCATTTAGGTCTCAAAAATTAGGGTGACCAGCCACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAAAAGCATTTAGGTCTCAAAAATTAGGGTGACCAGCCACATCC  600

seq1  TCCGATTTGGGGAGCCCCCTAGGAACTCTGGCACAATCAAAACTAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATTTGGGGAGCCCCCTAGGAACTCTGGCACAATCAAAACTAACATG  650

seq1  -TTCCACTTATGGTCACATATGTTTCAAATATGCAAC-TTTTGAGAGAAA  698
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCCACTTATGGTCACATATGTTTCAAATATGCAACTTTTTGAGAGAAA  700

seq1  AACAACAACAACAAAACTAAGTATCCAAGAAGGAAAAAAC-TTTACTTCC  747
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACAACAACAACAAAACTAAGTATCCAAGAAGGAAAAAACTTTTACTTCC  750

seq1  TAAGCCTGGTAGGTTGTATTTCCCTTACAAGAAGGATAGCTTATTTTTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGGTAGGTTGTATTTCCCTTACAAGAAGGATAGCTTATTTTTCA  800

seq1  TAAAAATCAAAGCAACAAATTAATGT-CCAGATTGTGAGACATACAGAGA  846
      ||||||||||||||| |||||||||| |||||||||||||||||| ||||
seq2  TAAAAATCAAAGCAATAAATTAATGTCCCAGATTGTGAGACATACTGAGA  850

seq1  AAGTATCTCAGATCGTTAGCTGATCCAGGATACTGGTTTTCTCTTAGAAA  896
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGTATCTCAGATCGTTAGCTGATCCAGGATACTGGTTTTC-CTTAGAAA  899

seq1  GCAAAATCTTTTCCTG  912
      |||||| |||| ||||
seq2  GCAAAA-CTTTCCCTG  914