BAC Information

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BAC

Clone NameB6Ng01-144I18
Chromosome2 (Build37)
Map Location 161,234,876 - 161,387,529
singlet/doubletdoublet
Overlap geneLOC383770, Ptprt
Upstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144I18.bB6Ng01-144I18.g
ACCDH942198DH942199
length1,0471,151
definitionDH942198|Mus musculus domesticus DNA, BAC clone: B6Ng01-144I18, 5' end.DH942199|Mus musculus domesticus DNA, BAC clone: B6Ng01-144I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,386,469 - 161,387,529)(161,234,876 - 161,236,039)
sequence
gaattctcctgatgctggactgtgaatggaaaccaggcaacttgggagaa
agagcagtttcataatggaactccttctagtggccaacacacacacacac
acacacacacacacacacacacacacacacacaccattatatttatggct
cagtaatcacacaaggcagtgttcctggttatgagtcagacagtctgggt
gtgttcctcactccattcctcgccagctgttgactgtgaacaattttctc
ggcttccccatgtttaaatcctcacctgtagaatgtggggcaacatattt
tctaaggttgtggtgacatataattaacaccatatacgaaaataagccat
ggaacatttaataggcaatgctagacaaggtaagtatgagctctcattag
ctgtaggagtctgaggctctttctagaaggtacttagctccaaggtctca
gatcccagcaatgtccatttgcctccaaagcctgttgtgtactgagtgtt
cccctaagtgggttcccagggatgctagcctacaggatgaggagtgagca
gagggttccatggttaaatacgcttgggaaatgctgtgtcctctgcccgg
ttgaagagtcctaagatacttattaacaacattagtacttttgaagaact
aagtcatcttttaccaaagcagcttgtttatctttgttgaaacaagcatt
tcccaaactcatttgaccacaaaaaaacctctttttgttttgttttgttc
cttgttttgtttgtttatttattttcatttttgtttacctaacacctatt
agcacccagcggaacacactgtgggaactgccacgctaggccgtgctgca
tcccccggaatggtaaatatgcttttgttattttaaggggaaactatgat
ttctttttctcttttgtggaactagagccaaacatgggactggcttgctg
tagcattgacacctaccgctgggcagaaagtatgggatatcttccctttg
agctcagaatgtctgtttctaccaactaaagactttcctccagcccc
acatctgctcatatctgtgggatcatgagatggtctccagtattctgaag
actgttttcctcatcttcgaaatgggaataattatcagtgcgagtcagca
tgcttgggatgagggtgaattcagcggcaggcgatgactgtgaaaagtac
acaaagaacagagtgggaaagcactcaactcctaacaattgctgatttct
acctctcttctctccaccaggaaatagtgctggctcttctcatgccaagg
gaaacctcaacacttatcatcttttatctatctatctatctatctatcta
tctatctatctatctatctatcatatatatgcactgtagctgtcttcaga
cacaccagaagagggcatcagatcccattatagatggttgtgagccacca
tgtggttgctgggaattgaactcaggacctctggaagagcactcagggct
cttaactgctgagccatctctccagcccctcctcttctagatctaacaac
atggaacgaaatacctgtactatcctctcaccagcacattttcactttca
gggatgctcttggattccctgtatcctgttttcaacaggggtcaatatct
ggctaggtttgagtgatggagtccaaggtatagtattggagttttataga
gagtcctaattttatgtatttctttatgacttcctgacttctgtatgaaa
ttattatcttttggaataactttggctaggccaaggctagagctcagtgg
gaatgcttgacaagcaaggggaaggttctaggtcctacacacaataccac
agaaatgaaaatttgatggttagtttcaaatatatactgtccacaaccta
gaattctgaatgagagtgtgttcatgcctgtgggcatgtctgttggggga
ttgtctttatttttaagtaatgtagaactacctcagctctttgtgggtgg
cgccatttctttaggcaggagttctggactacataaaacaaaagaaagct
agatgccaaactaagaggcagatgagtctgttagctttctccctgctttg
gactggagaagataagttagactagctggggagttcctggtcttgacttc
tcctcaggacggaactattatctaaaattgtaaccataatctctctcctc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161386469_161387529
seq2: B6Ng01-144I18.b_50_1096 (reverse)

seq1  GGGGCTGGAAGGAGAAAGGTTCTTAGTTGGGGAAGACACAGACAATCCTG  50
      ||||||    |||| || ||  ||||||  || ||| |||||| || |||
seq2  GGGGCT----GGAGGAAAGTCTTTAGTT--GGTAGAAACAGAC-ATTCTG  43

seq1  AGCTCAAAGGGAAGATATACCACTACTCTCTGCCCCAGCGGTAGGTGTCT  100
      |||||||||||||||||| ||| |||| |||| |||||||||||||||| 
seq2  AGCTCAAAGGGAAGATATCCCA-TACTTTCTG-CCCAGCGGTAGGTGTCA  91

seq1  ATGCTAACAGCAAGCCAGTCCCATGTTTGGCTCTAAGTTCCAC-AGAGAG  149
      ||||| |||||||||||||||||||||||||||| |||||||| | ||||
seq2  ATGCT-ACAGCAAGCCAGTCCCATGTTTGGCTCT-AGTTCCACAAAAGAG  139

seq1  AAAAAGAAATCATAGTTTCCCCCTTAAAATAACAAAAGCATTATTACCAT  199
      |||||||||||||||||| ||||||||||||||||||||||  |||||||
seq2  AAAAAGAAATCATAGTTT-CCCCTTAAAATAACAAAAGCATATTTACCAT  188

seq1  TCCGGGGGATGCAGCACGGCCTAGCGTGGCAGTTCCCACAGTGTGTTCCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGGGATGCAGCACGGCCTAGCGTGGCAGTTCCCACAGTGTGTTCCG  238

seq1  CTGGGTGCTAATAGGTGTTAGGTAAACAAAAATGAAAATAAAATAAAACA  299
      ||||||||||||||||||||||||||||||||||||||| |||||||   
seq2  CTGGGTGCTAATAGGTGTTAGGTAAACAAAAATGAAAAT-AAATAAA--C  285

seq1  AAACAAAACAAGGAACAAAACAAAACAAAAAGAGGTTTTTTTGTGGTCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAGGAACAAAACAAAACAAAAAGAGGTTTTTTTGTGGTCAA  335

seq1  ATGAGTTTGGGAAATGCTTGTTTCAACAAAGATAAACAAGCTGCTTTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTGGGAAATGCTTGTTTCAACAAAGATAAACAAGCTGCTTTGGT  385

seq1  AAAAGATGACTTAGTTCTTCAAAAGTACTAATGTTGTTAATAAGTATCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGACTTAGTTCTTCAAAAGTACTAATGTTGTTAATAAGTATCTT  435

seq1  AGGACTCTTCAACCGGGCAGAGGACACAGCATTTCCCAAGCGTATTTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTTCAACCGGGCAGAGGACACAGCATTTCCCAAGCGTATTTAAC  485

seq1  CATGGAACCCTCTGCTCACTCCTCATCCTGTAGGCTAGCATCCCTGGGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACCCTCTGCTCACTCCTCATCCTGTAGGCTAGCATCCCTGGGAA  535

seq1  CCCACTTAGGGGAACACTCAGTACACAACAGGCTTTGGAGGCAAATGGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTAGGGGAACACTCAGTACACAACAGGCTTTGGAGGCAAATGGAC  585

seq1  ATTGCTGGGATCTGAGACCTTGGAGCTAAGTACCTTCTAGAAAGAGCCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGGGATCTGAGACCTTGGAGCTAAGTACCTTCTAGAAAGAGCCTC  635

seq1  AGACTCCTACAGCTAATGAGAGCTCATACTTACCTTGTCTAGCATTGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTACAGCTAATGAGAGCTCATACTTACCTTGTCTAGCATTGCCT  685

seq1  ATTAAATGTTCCATGGCTTATTTTCGTATATGGTGTTAATTATATGTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTTCCATGGCTTATTTTCGTATATGGTGTTAATTATATGTCAC  735

seq1  CACAACCTTAGAAAATATGTTGCCCCACATTCTACAGGTGAGGATTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTTAGAAAATATGTTGCCCCACATTCTACAGGTGAGGATTTAAA  785

seq1  CATGGGGAAGCCGAGAAAATTGTTCACAGTCAACAGCTGGCGAGGAATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGAAGCCGAGAAAATTGTTCACAGTCAACAGCTGGCGAGGAATGG  835

seq1  AGTGAGGAACACACCCAGACTGTCTGACTCATAACCAGGAACACTGCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAACACACCCAGACTGTCTGACTCATAACCAGGAACACTGCCTT  885

seq1  GTGTGATTACTGAGCCATAAATATAATGGTGTGTGTGTGTGTGTGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTACTGAGCCATAAATATAATGGTGTGTGTGTGTGTGTGTGTGT  935

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTTGGCCACTAGAAGGAGTTCCATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTTGGCCACTAGAAGGAGTTCCATTA  985

seq1  TGAAACTGCTCTTTCTCCCAAGTTGCCTGGTTTCCATTCACAGTCCAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTGCTCTTTCTCCCAAGTTGCCTGGTTTCCATTCACAGTCCAGCA  1035

seq1  TCAGGAGAATTC  1061
      ||||||||||||
seq2  TCAGGAGAATTC  1047

seq1: chr2_161234876_161236039
seq2: B6Ng01-144I18.g_79_1229

seq1  ACATCTGCTCATATCTGTGGGATCATGAGATGGTCTCCAGTATTCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCTCATATCTGTGGGATCATGAGATGGTCTCCAGTATTCTGAAG  50

seq1  ACTGTTTTCCTCATCTTCGAAATGGGAATAATTATCAGTGCGAGTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCCTCATCTTCGAAATGGGAATAATTATCAGTGCGAGTCAGCA  100

seq1  TGCTTGGGATGAGGGTGAATTCAGCGGCAGGCGATGACTGTGAAAAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGATGAGGGTGAATTCAGCGGCAGGCGATGACTGTGAAAAGTAC  150

seq1  ACAAAGAACAGAGTGGGAAAGCACTCAACTCCTAACAATTGCTGATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACAGAGTGGGAAAGCACTCAACTCCTAACAATTGCTGATTTCT  200

seq1  ACCTCTCTTCTCTCCACCAGGAAATAGTGCTGGCTCTTCTCATGCCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCTTCTCTCCACCAGGAAATAGTGCTGGCTCTTCTCATGCCAAGG  250

seq1  GAAACCTCAACACTTATCATCTTTTATCTATCTATCTATCTATCTATCTA  300
      ||||||||||||||||||||||||        ||||||||||||||||||
seq2  GAAACCTCAACACTTATCATCTTT--------TATCTATCTATCTATCTA  292

seq1  TCTATCTATCTATCTATCTATCTATCTATCATATATATGCACTGTAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCATATATATGCACTGTAGCTG  342

seq1  TCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTATAGATGGTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTATAGATGGTTGTG  392

seq1  AGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAC  442

seq1  TCAGGGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCTCCTCTTCTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCTCCTCTTCTAGAT  492

seq1  CTAACAACATGGAACGAAATACCTGTACTATCCTCTCACCAGCACATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAACATGGAACGAAATACCTGTACTATCCTCTCACCAGCACATTTT  542

seq1  CACTTTCAGGGATGCTCTTGGATTCCCTGTATCCTGTTTTCAACAGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCAGGGATGCTCTTGGATTCCCTGTATCCTGTTTTCAACAGGGGT  592

seq1  CAATATCTGGCTAGGTTTGAGTGATGGAGTCCAAGGTATAGTATTGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTGGCTAGGTTTGAGTGATGGAGTCCAAGGTATAGTATTGGAGT  642

seq1  TTTATAGAGAGTCCTAATTTTATGTATTTCTTTATGACTTCCTGACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAGAGTCCTAATTTTATGTATTTCTTTATGACTTCCTGACTTCT  692

seq1  GTATGAAATTATTATCTTTTGGAATAACTTTGGCTAGGCCAAGGCTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAATTATTATCTTTTGGAATAACTTTGGCTAGGCCAAGGCTAGAG  742

seq1  CTCAGTGGGAATGCTTGACAAGCAAGGGGAAGGTTCTAGGTCCTACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGAATGCTTGACAAGCAAGGGGAAGGTTCTAGGTCCTACACAC  792

seq1  AATACCACAGAAATGAAAATTTGATGGTTAGTTTCAAATATATACTGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACAGAAATGAAAATTTGATGGTTAGTTTCAAATATATACTGTCC  842

seq1  ACAACCTAGAATTCTGAATGAGAGTGTGTTCATGCCTGTGGGCATGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTAGAATTCTGAATGAGAGTGTGTTCATGCCTGTGGGCATGTCTG  892

seq1  TTGGGGGATTGCCTTTATTCTTAAGTAATGTAGAACTACC-CAGCCCTTT  949
      ||||||||||| ||||||| |||||||||||||||||||| |||| ||||
seq2  TTGGGGGATTGTCTTTATTTTTAAGTAATGTAGAACTACCTCAGCTCTTT  942

seq1  GTGGGTGGCGCCA-TTCCTTAGGCAGGAGTTCTGAACTACATAAAACAAA  998
      ||||||||||||| ||| |||||||||||||||| |||||||||||||||
seq2  GTGGGTGGCGCCATTTCTTTAGGCAGGAGTTCTGGACTACATAAAACAAA  992

seq1  AGAAAGCTAGAAG-CAAACCAAGAGGCAGAATGAGTCTGTTAG-TTTCTC  1046
      ||||||||||| | ||||| ||||||||| ||||||||||||| ||||||
seq2  AGAAAGCTAGATGCCAAACTAAGAGGCAG-ATGAGTCTGTTAGCTTTCTC  1041

seq1  TCTGCTTCTGACTGTAGATGTGATGTTAGACTAGCTGTGTGAGTT-CTTG  1095
       ||||||  ||||| ||| |  | ||||||||||||| | ||||| || |
seq2  CCTGCTTTGGACTGGAGAAGATAAGTTAGACTAGCTG-GGGAGTTCCTGG  1090

seq1  TCTTGACTTCTCCTCAGGGACGGAACTATAATCTAAAATTGTAAACCATA  1145
      |||||||||||||||| |||||||||||| |||||||||||| |||||||
seq2  TCTTGACTTCTCCTCA-GGACGGAACTATTATCTAAAATTGT-AACCATA  1138

seq1  TAACTCTTTCTTCTCCTCT  1164
       | |||     ||||||||
seq2  -ATCTC-----TCTCCTCT  1151