BAC Information

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BAC

Clone NameB6Ng01-144J06
Chromosome2 (Build37)
Map Location 102,908,672 - 103,047,703
singlet/doubletdoublet
Overlap genePdhx, Apip
Upstream geneLdlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44
Downstream geneEhf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144J06.bB6Ng01-144J06.g
ACCDH942220DH942221
length1,104741
definitionDH942220|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J06, 5' end.DH942221|Mus musculus domesticus DNA, BAC clone: B6Ng01-144J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,908,672 - 102,909,781)(103,046,965 - 103,047,703)
sequence
gaattctggaaacttttcagaggatacataaatgctagggtcctgagagg
tagagtgggttggatgttggctggtattggtcatggtttgataagcagtg
ctgcacaaagaagaaaaagcatgaacattagatatcttcacagtgaagat
caaaattgccccaaggaatttgacacccttaatcagcaggaagtactcta
acactaatgccacaccccttcctattcctgattttgctcagagatctctt
tcctttcctctcctctttttctctcctagctagtgttagggggttgaaag
tgtggaaaagagatgaagaagggtggaagaaaaaaagaacccaccaagta
gctaaagaccagtaacacatgacagcaaaacataaacatttctaaactag
gctgaggaattctgtgtctgctcctgtggtctaaaattgcatttttccaa
aagtatgtgaaatcaccgttacctcaggactgttatcaaagtactattac
acagtgtagtttgtatgcctcactcccaatacaaagaaaaggcacaagtg
ctcgcttaggataaacacagtgactaaaatgtgagcaagctagagcttct
ctgctgtctataacctgggtatgataggcagtgttggtgccaggcagaca
ggttgaaattgattattgctagagcatataccatggatagagatgagtta
attcacattaattattgagaagactgcatagtgttagggaagctctcaat
gaatattatattacttctgaatctatttcccaactggttttgctatccaa
ggctcattttaaaaacgcattttgtattaaatctttgacaattttatatc
ttcataaaacaaattttcaatatattcacctcatactcctcctctcaccc
cttttgtaatcacccctcactctttatccactcccaacctcagcacaatc
tttttcacccatggaatccagtttgtgctgcccatatacaactagggata
gggccatccactggatggaggtcactaccatgactaacccttaaggattc
ttccttcactaacagcatcaactgaacagtagtacttagtgacccccccc
cccc
gaattctttatacacaagggagaaaggaaggtgagagggaatagcagaga
aacacttattgggccagaaggatattaagtacttttagatatttcactgt
ctcttcacagacagcctgtgttagtgaacattattgtcccattgcagagc
tggggaaattcccattatagatggtaggcatgagagctgaactagagcat
atcttcttcattctatgtgttgtagagctctagaaattggcttctgaaaa
gtttctgagggctgaggagaaggctcagtgggtgaagcccctagtgtgca
atggggagaatttgggtttgagttctggaacttttgtaaagcaagacact
acagcaggagtcggtaatcccagaacattagtggcaagctgagaagcaga
aataggaggatctccagaaactcatgggccagctagcctgccaaatacag
ccataaacaagagagactctgtcttaagcaagctggaagaagactggcac
ctaacattgtctccacacatgttgtggcatgtatacactgacactcacac
acacagacatggacatacaggaacatgcggtgggtaggggtagaaagagg
agggagggaaaatctggataagaaaaatgttcatctgattcttaaggaga
aacctttctggcccccaaatttctacgtcctcagctgttactttcacaca
gtaggaaatgagtccttacttaatgggaaatatgtgtgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_102908672_102909781
seq2: B6Ng01-144J06.b_43_1146

seq1  GAATTCTGGAAACTTTTCAGAGGATACATAAATGCTAGGGTCCTGAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAAACTTTTCAGAGGATACATAAATGCTAGGGTCCTGAGAGG  50

seq1  TAGAGTGGGTTGGATGTTGGCTGGTATTGGTCATGGTTTGATAAGCAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGGGTTGGATGTTGGCTGGTATTGGTCATGGTTTGATAAGCAGTG  100

seq1  CTGCACAAAGAAGAAAAAGCATGAACATTAGATATCTTCACAGTGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAAGAAGAAAAAGCATGAACATTAGATATCTTCACAGTGAAGAT  150

seq1  CAAAATTGCCCCAAGGAATTTGACACCCTTAATCAGCAGGAAGTACTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGCCCCAAGGAATTTGACACCCTTAATCAGCAGGAAGTACTCTA  200

seq1  ACACTAATGCCACACCCCTTCCTATTCCTGATTTTGCTCAGAGATCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATGCCACACCCCTTCCTATTCCTGATTTTGCTCAGAGATCTCTT  250

seq1  TCCTTTCCTCTCCTCTTTTTCTCTCCTAGCTAGTGTTAGGGGGTTGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCTCTCCTCTTTTTCTCTCCTAGCTAGTGTTAGGGGGTTGAAAG  300

seq1  TGTGGAAAAGAGATGAAGAAGGGTGGAAGAAAAAAAGAACCCACCAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAAGAGATGAAGAAGGGTGGAAGAAAAAAAGAACCCACCAAGTA  350

seq1  GCTAAAGACCAGTAACACATGACAGCAAAACATAAACATTTCTAAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGACCAGTAACACATGACAGCAAAACATAAACATTTCTAAACTAG  400

seq1  GCTGAGGAATTCTGTGTCTGCTCCTGTGGTCTAAAATTGCATTTTTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAATTCTGTGTCTGCTCCTGTGGTCTAAAATTGCATTTTTCCAA  450

seq1  AAGTATGTGAAATCACCGTTACCTCAGGACTGTTATCAAAGTACTATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTGAAATCACCGTTACCTCAGGACTGTTATCAAAGTACTATTAC  500

seq1  ACAGTGTAGTTTGTATGCCTCACTCCCAATACAAAGAAAAGGCACAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAGTTTGTATGCCTCACTCCCAATACAAAGAAAAGGCACAAGTG  550

seq1  CTCGCTTAGGATAAACACAGTGACTAAAATGTGAGCAAGCTAGAGCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTTAGGATAAACACAGTGACTAAAATGTGAGCAAGCTAGAGCTTCT  600

seq1  CTGCTGTCTATAACCTGGGTATGATAGGCAGTGTTGGTGCCAGGCAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCTATAACCTGGGTATGATAGGCAGTGTTGGTGCCAGGCAGACA  650

seq1  GGTTGAAATTGATTATTGCTAGAGCATATACCATGGATAGAGATGAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAATTGATTATTGCTAGAGCATATACCATGGATAGAGATGAGTTA  700

seq1  ATTCACATTAATTATTGAGAAGACTGCATAGTGTTAGGGAAGCTCTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATTAATTATTGAGAAGACTGCATAGTGTTAGGGAAGCTCTCAAT  750

seq1  GAATATTATATTACTTCTGAATCTATTTCCCAACTGGTTTTGCTATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATATTACTTCTGAATCTATTTCCCAACTGGTTTTGCTATCCAA  800

seq1  GGCTCATTTTAAAAACGCATTTTGTATTAAATCTTTGACAATTTTATATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTTTAAAAACGCATTTTGTATTAAATCTTTGACAATTTTATATC  850

seq1  TTCATAAAACAAATTTTCAATATATTCACCTCATACTCCTCCCTCTCAAC  900
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  TTCATAAAACAAATTTTCAATATATTCACCTCATACTCCT-CCTCTCACC  899

seq1  CCCTTTGTAATCACCCCTCACTCTTTATCCACTCCCAACCTCAGGCACAA  950
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTTTTGTAATCACCCCTCACTCTTTATCCACTCCCAACCTCA-GCACAA  948

seq1  TCTTTTTCACCCATGGAATCCAGTTTGTGCTGCCCATATACAACTAGGTA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTTTTCACCCATGGAATCCAGTTTGTGCTGCCCATATACAACTAGGGA  998

seq1  TAGGGCCATCCACTGGATTGAGGTCAACCTACCATGAACTAAACCCTAAA  1050
      |||||||||||||||||| |||||||  |||||||| ||| |||||| ||
seq2  TAGGGCCATCCACTGGATGGAGGTCA--CTACCATG-ACT-AACCCTTAA  1044

seq1  GGATTC-TCCTCACCTAACAGCCATCAACTG-ACAGTAGTAACTTAGTGA  1098
      |||||| ||||   ||||||| ||||||||| |||||||| |||||||||
seq2  GGATTCTTCCTTCACTAACAG-CATCAACTGAACAGTAGT-ACTTAGTGA  1092

seq1  CCCCCCCCCCCC  1110
      ||||||||||||
seq2  CCCCCCCCCCCC  1104

seq1: chr2_103046965_103047703
seq2: B6Ng01-144J06.g_65_805 (reverse)

seq1  CTGCACACATATTTCCCATTTAGTAAGTACTCATTTCCTACTGTGTG-AA  49
      |||||||||||||||||||| |||||| ||||||||||||||||||| ||
seq2  CTGCACACATATTTCCCATTAAGTAAGGACTCATTTCCTACTGTGTGAAA  50

seq1  GTTACAGCTGAGGACGTAGAAATTTGGGGGCCAG-AAGGTTTCTCCTTAA  98
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTAACAGCTGAGGACGTAGAAATTTGGGGGCCAGAAAGGTTTCTCCTTAA  100

seq1  GAATCAGATGAACATTTTTCTTATCCAGATTTTCCCTCCCTCCTCTTTCT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGATGAACATTTTTCTTATCCAGATTTTCCCTCCCTCCTCTTTCT  150

seq1  ACCCCTACCCACCGCATGTTCCTGTATGTCCATGTCTGTGTGTGTGAGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTACCCACCGCATGTTCCTGTATGTCCATGTCTGTGTGTGTGAGTG  200

seq1  TCAGTGTATACATGCCACAACATGTGTGGAGACAATGTTAGGTGCCAGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATACATGCCACAACATGTGTGGAGACAATGTTAGGTGCCAGTC  250

seq1  TTCTTCCAGCTTGCTTAAGACAGAGTCTCTCTTGTTTATGGCTGTATTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCAGCTTGCTTAAGACAGAGTCTCTCTTGTTTATGGCTGTATTTG  300

seq1  GCAGGCTAGCTGGCCCATGAGTTTCTGGAGATCCTCCTATTTCTGCTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTAGCTGGCCCATGAGTTTCTGGAGATCCTCCTATTTCTGCTTCT  350

seq1  CAGCTTGCCACTAATGTTCTGGGATTACCGACTCCTGCTGTAGTGTCTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCACTAATGTTCTGGGATTACCGACTCCTGCTGTAGTGTCTTG  400

seq1  CTTTACAAAAGTTCCAGAACTCAAACCCAAATTCTCCCCATTGCACACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAAGTTCCAGAACTCAAACCCAAATTCTCCCCATTGCACACTA  450

seq1  GGGGCTTCACCCACTGAGCCTTCTCCTCAGCCCTCAGAAACTTTTCAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCACCCACTGAGCCTTCTCCTCAGCCCTCAGAAACTTTTCAGAA  500

seq1  GCCAATTTCTAGAGCTCTACAACACATAGAATGAAGAAGATATGCTCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTCTAGAGCTCTACAACACATAGAATGAAGAAGATATGCTCTAG  550

seq1  TTCAGCTCTCATGCCTACCATCTATAATGGGAATTTCCCCAGCTCTGCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCTCATGCCTACCATCTATAATGGGAATTTCCCCAGCTCTGCAA  600

seq1  TGGGACAATAATGTTCACTAACACAGGCTGTCTGTGAAGAGACAGTGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATAATGTTCACTAACACAGGCTGTCTGTGAAGAGACAGTGAAA  650

seq1  TATCTAAAAGTACTTAATATCCTTCTGGCCCAATAAGTGTTTCTCTGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAAGTACTTAATATCCTTCTGGCCCAATAAGTGTTTCTCTGCTA  700

seq1  TTCCCTCTCACCTTCCTTTCTCCCTTGTGTATAAAGAATTC  739
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCACCTTCCTTTCTCCCTTGTGTATAAAGAATTC  741