BAC Information

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BAC

Clone NameB6Ng01-145A17
Chromosome2 (Build37)
Map Location 44,408,781 - 44,576,747
singlet/doubletdoublet
Overlap geneGtdc1
Upstream geneKynu, Arhgap15
Downstream geneZeb2, LOC100042661
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145A17.bB6Ng01-145A17.g
ACCDH942558DH942559
length1,1021,080
definitionDH942558|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A17, 5' end.DH942559|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,408,781 - 44,409,908)(44,575,654 - 44,576,747)
sequence
gaattcattcattctatggcttcctttacttcctgaggaattaactgcta
gccaaagtatgcagtaggaaagtgcgttcaaataattcatccatttaaaa
atcatcattttcataagtagggaaggtaacattatacaggcatattcatt
ttatgttctagcagctcatttctaaatggtaaatgcttcagaagcagagc
ttgcctctaggccttctttgccatctcccacaatggaaatatggatatct
agagcacgcttataaagaaggctgaatttgaaaactggcccacgtgcatc
aaaaaggtttctctggaagcttcctgtagctgtaacaatccaggtagttg
ccgcactcttaagacttatgtcttatctatgaaaagtaatcttgatggtt
ttgtcctagaatgattttattccaatgccacctggaatgtttttccttca
tttcctacagcttcatttttatctctcacatcttcctggccaacccccta
gacttgaatacttttctcattgttcctttagaggagtctcatcatctttc
tagaacatagagatccattcgacatgagagagaaaaaaatttagcatgtg
aaatttaagcgggaaatatcatacatacaggtcagtttgttttctcaagt
aaagtattcctactgtttttagctatgcataactcggtaatctatgttgg
tataattttcaattgatctgctgaaactccaatgtttgagaaaacagacg
attgaagagcacaaagaccggactttataacactgcgctcttacagagaa
gtaaaacatccagaatgtgcccacttgatgggagtttgctgccaagcctc
tgcacaggctgaaagcatcaagactccgtccttactgtgaaaaccaaaca
attcactatcatccactatgataaaaaaaaaaaaataaatcacattcccc
aaccctttcaggacatctgcttcatcttgatctcctgggtggtggttggg
agatgctatggtgtgggacctatctatatgttctctgggatcgaacctat
gttgctgtagcgaaagctaccaggtctcttgtctcctccttgcgagttca
ta
gaattctttataacatgagcacaattcttcttaatgaacgttagtactga
gtaaacatttctgggatattggaaaagacgatttgtatggtgctgggcac
catgaccaagcatagcttagcactcagccctttgacatttgtgcacactc
ccctcttttcacttcaagtggatgcagcttctggagaagcacttgcgatg
attggaaagtcaggattgcattttgactgcttaatctataggaacatatt
ggaatatttgtaaaggatgtgaggaaatgtgattgaaagtggacatcata
attgtctgcctacttgctgtattcacatgtagacaaataacccttatcac
tgaaagttgatatggaaatattaagtatagattataataattatcgtgga
accttttgaaaaccaagcttgtactgttatctgaaaatctcgtgttttca
ttgtgagcctgcctagtgagacagatcagaacctggaacttgtctgtgta
gaaactaattgtcagctcagtgtgcagaggctgttaaaacacctctgcaa
ccaggtctgccatgtccttgtgctcccaggtcgtcatcttctggagtgcc
ccacctttcttcagggaggatgaaggcaactgaagctctgacagaacaca
ccttcaagcagcatacagaacttagagttgcctgagagaaaactagatga
gtcttgaaatacgagcttcattgtaaacatcccaaaagaccaagcatttg
aaattgaaggaaaagatgagagagagtcttggaagaggcagacagacaaa
tttgaaacaagtgtttctgaggctggagggcaagcatggagtggcttaaa
gcatttctgaaagccatttctgtcagcatcagagttttcttgacagagag
tttagtggaagtagggcatttgtgaagatgggcactggaaacggaagaag
tgcactcatcaccatatgagagtattcagcacccgggtaatgcaatggta
tacacagtctgactctaggataatggtctctgtcttcatctccctccccc
ttcaaacgtaactgagaattggacagggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_44408781_44409908
seq2: B6Ng01-145A17.b_47_1148

seq1  GAATTCATTCATTCTATGGCTTCCTTTACTTCCTGAGGAATTAACTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTCTATGGCTTCCTTTACTTCCTGAGGAATTAACTGCTA  50

seq1  GCCAAAGTATGCAGTAGGAAAGTGCGTTCAAATAATTCATCCATTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTATGCAGTAGGAAAGTGCGTTCAAATAATTCATCCATTTAAAA  100

seq1  ATCATCATTTTCATAAGTAGGGAAGGTAACATTATACAGGCATATTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTTTCATAAGTAGGGAAGGTAACATTATACAGGCATATTCATT  150

seq1  TTATGTTCTAGCAGCTCATTTCTAAATGGTAAATGCTTCAGAAGCAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCTAGCAGCTCATTTCTAAATGGTAAATGCTTCAGAAGCAGAGC  200

seq1  TTGCCTCTAGGCCTTCTTTGCCATCTCCCACAATGGAAATATGGATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTAGGCCTTCTTTGCCATCTCCCACAATGGAAATATGGATATCT  250

seq1  AGAGCACGCTTATAAAGAAGGCTGAATTTGAAAACTGGCCCACGTGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACGCTTATAAAGAAGGCTGAATTTGAAAACTGGCCCACGTGCATC  300

seq1  AAAAAGGTTTCTCTGGAAGCTTCCTGTAGCTGTAACAATCCAGGTAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGTTTCTCTGGAAGCTTCCTGTAGCTGTAACAATCCAGGTAGTTG  350

seq1  CCGCACTCTTAAGACTTATGTCTTATCTATGAAAAGTAATCTTGATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACTCTTAAGACTTATGTCTTATCTATGAAAAGTAATCTTGATGGTT  400

seq1  TTGTCCTAGAATGATTTTATTCCAATGCCACCTGGAATGTTTTTCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTAGAATGATTTTATTCCAATGCCACCTGGAATGTTTTTCCTTCA  450

seq1  TTTCCTACAGCTTCATTTTTATCTCTCACATCTTCCTGGCCAACCCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACAGCTTCATTTTTATCTCTCACATCTTCCTGGCCAACCCCCTA  500

seq1  GACTTGAATACTTTTCTCATTGTTCCTTTAGAGGAGTCTCATCATCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAATACTTTTCTCATTGTTCCTTTAGAGGAGTCTCATCATCTTTC  550

seq1  TAGAACATAGAGATCCATTCGACATGAGAGAGAAAAAAATTTAGCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATAGAGATCCATTCGACATGAGAGAGAAAAAAATTTAGCATGTG  600

seq1  AAATTTAAGCGGGAAATATCATACATACAGGTCAGTTTGTTTTCTCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGCGGGAAATATCATACATACAGGTCAGTTTGTTTTCTCAAGT  650

seq1  AAAGTATTCCTACTGTTTTTAGCTATGCATAACTCGGTAATCTATGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTCCTACTGTTTTTAGCTATGCATAACTCGGTAATCTATGTTGG  700

seq1  TATAATTTTCAATTGATCTGCTGAAACTCCAATGTTTGAGAAAACAGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTCAATTGATCTGCTGAAACTCCAATGTTTGAGAAAACAGACG  750

seq1  ATTGAAGAGCACAAAGACCGGACTTTATAACACTGCGCTCTTACAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAGCACAAAGACCGGACTTTATAACACTGCGCTCTTACAGAGAA  800

seq1  GTAAAACATCCAGAATGTGCCCACTTGATGGGAGTTTGCTGCCAAGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACATCCAGAATGTGCCCACTTGATGGGAGTTTGCTGCCAAGCCTC  850

seq1  TGCACAGGCTGAAAGCATCAAGACTCCGTCCTTACTGTGAAAACCAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGCTGAAAGCATCAAGACTCCGTCCTTACTGTGAAAACCAAACA  900

seq1  ATTCACTATCATCCACTAAGGATAAAAAAAAAAAAAAAAAAAAAAAAATC  950
      |||||||||||||||||| |         | ||||||||||||| |||||
seq2  ATTCACTATCATCCACTATG---------ATAAAAAAAAAAAAATAAATC  941

seq1  ACATTCCCCAAACCCTTTTCAAGACATCTGCCTCCATCTTTGATTCTCCC  1000
      |||||||||||  || ||||| |||||||| || |||| |||| ||||| 
seq2  ACATTCCCCAA--CCCTTTCAGGACATCTG-CTTCATC-TTGA-TCTCC-  985

seq1  TTGGGTGGTGGTGGGGAGATGCTATGGTGTGAGACCCTATCTATAGTCAC  1050
       ||||||||||| |||||||||||||||||| || |||||||||| |   
seq2  -TGGGTGGTGGTTGGGAGATGCTATGGTGTGGGA-CCTATCTATA-TGTT  1032

seq1  CTCTGGAGATCAAAACTATTGTTGCCTGTAGCAGAAGGCTACCAGGTTCT  1100
      |||||| |||| || ||| ||||| ||||||| ||| ||||||||| |||
seq2  CTCTGG-GATCGAACCTA-TGTTG-CTGTAGC-GAAAGCTACCAGG-TCT  1077

seq1  CTTGTCTCTCTCCTTTGCAGAGTTCATA  1128
      |||||||| |||| |||| |||||||||
seq2  CTTGTCTC-CTCC-TTGC-GAGTTCATA  1102

seq1: chr2_44575654_44576747
seq2: B6Ng01-145A17.g_66_1145 (reverse)

seq1  AACCCTGTTCAAAATTCCTTCAGTTACGTTTTGAAGGGGAGGGAGGATGA  50
      |||||||| |  |||||  ||||||||||||  | ||||||||| |||| 
seq2  AACCCTGTCC--AATTC--TCAGTTACGTTTGAAGGGGGAGGGA-GATG-  44

seq1  AAGACAGAGACCATTATCCTAGAGTCAGACCTGTGTATAACCATTGCAAT  100
      ||||||||||||||||||||||||||||| |||||||| |||||||| ||
seq2  AAGACAGAGACCATTATCCTAGAGTCAGA-CTGTGTAT-ACCATTGC-AT  91

seq1  AACCCGGGTGCTGAATACTCTCAATATGGTGATGAGTGCCACTTCCTTCC  150
       ||||||||||||||||||||| ||||||||||||||| ||||| |||||
seq2  TACCCGGGTGCTGAATACTCTC-ATATGGTGATGAGTG-CACTT-CTTCC  138

seq1  GTTTCCAGTGCCCATCTTCACAAATGCCCTACCTTCCACTTAAACTCTCT  200
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  GTTTCCAGTGCCCATCTTCACAAATGCCCTA-CTTCCAC-TAAACTCTCT  186

seq1  GTCAAGAAAACTCTGATGCTGACAGAAATGGCTTTCAGAAATGCTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAAAACTCTGATGCTGACAGAAATGGCTTTCAGAAATGCTTTAAG  236

seq1  CCACTCCATGCTTGCCCTCCAGCCTCAGAAACACTTGTTTCAAATTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCATGCTTGCCCTCCAGCCTCAGAAACACTTGTTTCAAATTTGTC  286

seq1  TGTCTGCCTCTTCCAAGACTCTCTCTCATCTTTTCCTTCAATTTCAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTCTTCCAAGACTCTCTCTCATCTTTTCCTTCAATTTCAAATG  336

seq1  CTTGGTCTTTTGGGATGTTTACAATGAAGCTCGTATTTCAAGACTCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTTTGGGATGTTTACAATGAAGCTCGTATTTCAAGACTCATCT  386

seq1  AGTTTTCTCTCAGGCAACTCTAAGTTCTGTATGCTGCTTGAAGGTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCTCAGGCAACTCTAAGTTCTGTATGCTGCTTGAAGGTGTGTT  436

seq1  CTGTCAGAGCTTCAGTTGCCTTCATCCTCCCTGAAGAAAGGTGGGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAGCTTCAGTTGCCTTCATCCTCCCTGAAGAAAGGTGGGGCACT  486

seq1  CCAGAAGATGACGACCTGGGAGCACAAGGACATGGCAGACCTGGTTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGATGACGACCTGGGAGCACAAGGACATGGCAGACCTGGTTGCAG  536

seq1  AGGTGTTTTAACAGCCTCTGCACACTGAGCTGACAATTAGTTTCTACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTTAACAGCCTCTGCACACTGAGCTGACAATTAGTTTCTACACA  586

seq1  GACAAGTTCCAGGTTCTGATCTGTCTCACTAGGCAGGCTCACAATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTCCAGGTTCTGATCTGTCTCACTAGGCAGGCTCACAATGAAAA  636

seq1  CACGAGATTTTCAGATAACAGTACAAGCTTGGTTTTCAAAAGGTTCCACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGATTTTCAGATAACAGTACAAGCTTGGTTTTCAAAAGGTTCCACG  686

seq1  ATAATTATTATAATCTATACTTAATATTTCCATATCAACTTTCAGTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTATAATCTATACTTAATATTTCCATATCAACTTTCAGTGATA  736

seq1  AGGGTTATTTGTCTACATGTGAATACAGCAAGTAGGCAGACAATTATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTATTTGTCTACATGTGAATACAGCAAGTAGGCAGACAATTATGAT  786

seq1  GTCCACTTTCAATCACATTTCCTCACATCCTTTACAAATATTCCAATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTTTCAATCACATTTCCTCACATCCTTTACAAATATTCCAATATG  836

seq1  TTCCTATAGATTAAGCAGTCAAAATGCAATCCTGACTTTCCAATCATCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAGATTAAGCAGTCAAAATGCAATCCTGACTTTCCAATCATCGC  886

seq1  AAGTGCTTCTCCAGAAGCTGCATCCACTTGAAGTGAAAAGAGGGGAGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTCTCCAGAAGCTGCATCCACTTGAAGTGAAAAGAGGGGAGTGT  936

seq1  GCACAAATGTCAAAGGGCTGAGTGCTAAGCTATGCTTGGTCATGGTGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAATGTCAAAGGGCTGAGTGCTAAGCTATGCTTGGTCATGGTGCCC  986

seq1  AGCACCATACAAATCGTCTTTTCCAATATCCCAGAAATGTTTACTCAGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCATACAAATCGTCTTTTCCAATATCCCAGAAATGTTTACTCAGTA  1036

seq1  CTAACGTTCATTAAGAAGAATTGTGCTCATGTTATAAAGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGTTCATTAAGAAGAATTGTGCTCATGTTATAAAGAATTC  1080