BAC Information

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BAC

Clone NameB6Ng01-145J21
Chromosome2 (Build37)
Map Location 138,513,421 - 138,599,227
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145J21.bB6Ng01-145J21.g
ACCDH942971DH942972
length8541,023
definitionDH942971|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J21, 5' end.DH942972|Mus musculus domesticus DNA, BAC clone: B6Ng01-145J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,513,421 - 138,514,274)(138,598,181 - 138,599,227)
sequence
gaattcttatggaggctagacctggccatgcaaatcacactcttctgcta
gctcatactacccgctttcctggctaacattcctgactccatcttgtgag
aaacactgtggtcatactgggtcggttctgataatctagtacaacctctc
cagctagggatcattaatttaactataactacaaagcttcacttatgaga
aaacttgaatcccaggttctggcttttaagatatagatatctttgggact
attattcagtctataatgaacactacgtgttaaagaatagttgtctctgt
ttttcattgtgcttgttaattaaaaataagaatttaaaatatactatttt
ctcacttcttcattttaaaatatcctttgatccccttttggctctaagag
gcagtataatttcttatctcaataatggaaaaataatatagtttgttaac
agaaaaccagtggtttgcactcttggcttcatgctaaagtcagctggaat
tccttaaagtcccaatgccaaggctgaacaccaaattaattaaatcaggc
tctgtagggactggatccaggttttagtgacttcaaaagctctccatgta
attctagtgggaatagaaaatggaccacctattatccccttctgtaactg
tgctttgtgggattttgggcaaaagcctcagctttagcagcaccaataaa
ctagacttggctgccagtcccaatgtgctaattaaagggaccagtaatgc
tgaaaatcactgaggggaggtttattcaagggatccagcaactccaattc
catctttggggtgctgacaagagcttaagcttaagcagaggtgtgggggg
gggg
gaattcttttactagctccaaatcttactatgcttaagatttttagatga
tataatcacgcaatttgtaaataataatttccctcatgtttccactttta
tattttagaacaattataaataattatgatgacagcaattgtccttcttt
tattctcagtttaaatgaaaaactgatttgtgctttaataggatttatga
tttgacaatgattttttttgtgataaataaacccacaaatacaagcagac
cttcaggtatcaaatgtctcacattacattcatatgaaactaagcttagt
atacggaatagttatactgtaactgtaactattttgtttaatgtttaaat
atattttaaaatgtactatgtgctatcttgtaatctttgaaatacttgta
actatctaggttcttttgttttttctttttctttgatttagcagcaaaat
aaatctgttagttgtctggaaatttgacttttttcatttttagcattaat
cccattaactactattacttctaatattttttatcttcaaattacatttt
aatataagtaaaattgttcattctttcttctctgctttattgtcatggtt
tggtatcaataataacaacatttttcagtttgttgaaaactatgacatat
gaaactaaaatgcaggtgacttttctatcaacttttctttcatttcttct
acttcagtttattttttttcttgtcatttaatctttgatcacttattcta
tagcattagcattatctaatattttctcatgcttcttggaagcaagtcct
gcctcattgttttttttgttttggtcttacttacagactccattattttt
cttggctttggtaagagcatttgtgttggaaagggtaaggcataaattcc
ctttatatttctctggtgctcatgccttgttattcttgtgagctgcttgc
cagtggtatttgaagagttctctatttactacaaataggagtcatttaaa
ttctctaactaacaagactcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138513421_138514274
seq2: B6Ng01-145J21.b_44_897

seq1  GAATTCTTATGGAGGCTAGACCTGGCCATGCAAATCACACTCTTCTGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGGAGGCTAGACCTGGCCATGCAAATCACACTCTTCTGCTA  50

seq1  GCTCATACTACCCGCTTTCCTGGCTAACATTCCTGACTCCATCTTGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATACTACCCGCTTTCCTGGCTAACATTCCTGACTCCATCTTGTGAG  100

seq1  AAACACTGTGGTCATACTGGGTCGGTTCTGATAATCTAGTACAACCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGTGGTCATACTGGGTCGGTTCTGATAATCTAGTACAACCTCTC  150

seq1  CAGCTAGGGATCATTAATTTAACTATAACTACAAAGCTTCACTTATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGGGATCATTAATTTAACTATAACTACAAAGCTTCACTTATGAGA  200

seq1  AAACTTGAATCCCAGGTTCTGGCTTTTAAGATATAGATATCTTTGGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGAATCCCAGGTTCTGGCTTTTAAGATATAGATATCTTTGGGACT  250

seq1  ATTATTCAGTCTATAATGAACACTACGTGTTAAAGAATAGTTGTCTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAGTCTATAATGAACACTACGTGTTAAAGAATAGTTGTCTCTGT  300

seq1  TTTTCATTGTGCTTGTTAATTAAAAATAAGAATTTAAAATATACTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTGTGCTTGTTAATTAAAAATAAGAATTTAAAATATACTATTTT  350

seq1  CTCACTTCTTCATTTTAAAATATCCTTTGATCCCCTTTTGGCTCTAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTTCATTTTAAAATATCCTTTGATCCCCTTTTGGCTCTAAGAG  400

seq1  GCAGTATAATTTCTTATCTCAATAATGGAAAAATAATATAGTTTGTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATAATTTCTTATCTCAATAATGGAAAAATAATATAGTTTGTTAAC  450

seq1  AGAAAACCAGTGGTTTGCACTCTTGGCTTCATGCTAAAGTCAGCTGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCAGTGGTTTGCACTCTTGGCTTCATGCTAAAGTCAGCTGGAAT  500

seq1  TCCTTAAAGTCCCAATGCCAAGGCTGAACACCAAATTAATTAAATCAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAGTCCCAATGCCAAGGCTGAACACCAAATTAATTAAATCAGGC  550

seq1  TCTGTAGGGACTGGATCCAGGTTTTAGTGACTTCAAAAGCTCTCCATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGGACTGGATCCAGGTTTTAGTGACTTCAAAAGCTCTCCATGTA  600

seq1  ATTCTAGTGGGAATAGAAAATGGACCACCTATTATCCCCTTCTGTAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTGGGAATAGAAAATGGACCACCTATTATCCCCTTCTGTAACTG  650

seq1  TGCTTTGTGGGATTTTGGGCAAAAGCCTCAGCTTTAGCAGCACCAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTGGGATTTTGGGCAAAAGCCTCAGCTTTAGCAGCACCAATAAA  700

seq1  CTAGACTTGGCTGCCAGTCCCAATGTGCTAATTAAAGGGACCAGTAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTGGCTGCCAGTCCCAATGTGCTAATTAAAGGGACCAGTAATGC  750

seq1  TGAAAATCACTGAGGGGAGGTTTATTCAAGGGATCCAGCAACTCCAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCACTGAGGGGAGGTTTATTCAAGGGATCCAGCAACTCCAATTC  800

seq1  CATCTTTGGGGTGCTGACAAGAGCTTAAGCTTAAGCAGAGGTGTGGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGGGGTGCTGACAAGAGCTTAAGCTTAAGCAGAGGTGTGGGGGG  850

seq1  GGGG  854
      ||||
seq2  GGGG  854

seq1: chr2_138598181_138599227
seq2: B6Ng01-145J21.g_67_1089 (reverse)

seq1  CTTGAGTCTTTGTTAAAGTTAGAGGAAATTTTAAAAATTGACTTCTTAAT  50
      |||||||| |||||  ||||||||  |||||    || ||||| ||  ||
seq2  CTTGAGTC-TTGTT--AGTTAGAG--AATTT----AAATGACTCCT--AT  39

seq1  TTGTAAGTAAATAGAGAACTCTTCAAAATAACCACTGGCAAGCAAGCTCA  100
      |||| ||||||||||||||||||||||   ||||||||||||| ||||||
seq2  TTGT-AGTAAATAGAGAACTCTTCAAA--TACCACTGGCAAGC-AGCTCA  85

seq1  CAAGAATAAACAAAGGCATGAGCACCAAGAGAAATATAAAAGGGAATTTA  150
      |||||||||   |||||||||||||| |||||||||| ||||||||||||
seq2  CAAGAATAA--CAAGGCATGAGCACC-AGAGAAATAT-AAAGGGAATTTA  131

seq1  TGCCCTTACCCTTTCCAACACAAATGCTCTTACCAAAGCCAAG-AAAATA  199
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TG-CCTTACCCTTTCCAACACAAATGCTCTTACCAAAGCCAAGAAAAATA  180

seq1  ATGGAGTCTGTAAGTAAGACCAAAAAAAAAAAAAAAAAAAAATGAGGCAG  249
      |||||||||||||||||||||     |||| |||||||| ||||||||||
seq2  ATGGAGTCTGTAAGTAAGACC-----AAAACAAAAAAAACAATGAGGCAG  225

seq1  GACTTGCTTCCAAGAAGCATGAGAAAATATTAGATAATGCTAATGCTATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTTCCAAGAAGCATGAGAAAATATTAGATAATGCTAATGCTATA  275

seq1  GAATAAGTGATCAAAGATTAAATGACAAGAAAAAAAATAAACTGAAGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTGATCAAAGATTAAATGACAAGAAAAAAAATAAACTGAAGTAG  325

seq1  AAGAAATGAAAGAAAAGTTGATAGAAAAGTCACCTGCATTTTAGTTTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAAAGAAAAGTTGATAGAAAAGTCACCTGCATTTTAGTTTCAT  375

seq1  ATGTCATAGTTTTCAACAAACTGAAAAATGTTGTTATTATTGATACCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATAGTTTTCAACAAACTGAAAAATGTTGTTATTATTGATACCAAA  425

seq1  CCATGACAATAAAGCAGAGAAGAAAGAATGAACAATTTTACTTATATTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACAATAAAGCAGAGAAGAAAGAATGAACAATTTTACTTATATTAA  475

seq1  AATGTAATTTGAAGATAAAAAATATTAGAAGTAATAGTAGTTAATGGGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTTGAAGATAAAAAATATTAGAAGTAATAGTAGTTAATGGGAT  525

seq1  TAATGCTAAAAATGAAAAAAGTCAAATTTCCAGACAACTAACAGATTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTAAAAATGAAAAAAGTCAAATTTCCAGACAACTAACAGATTTAT  575

seq1  TTTGCTGCTAAATCAAAGAAAAAGAAAAAACAAAAGAACCTAGATAGTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCTAAATCAAAGAAAAAGAAAAAACAAAAGAACCTAGATAGTTA  625

seq1  CAAGTATTTCAAAGATTACAAGATAGCACATAGTACATTTTAAAATATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTCAAAGATTACAAGATAGCACATAGTACATTTTAAAATATAT  675

seq1  TTAAACATTAAACAAAATAGTTACAGTTACAGTATAACTATTCCGTATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTAAACAAAATAGTTACAGTTACAGTATAACTATTCCGTATAC  725

seq1  TAAGCTTAGTTTCATATGAATGTAATGTGAGACATTTGATACCTGAAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTAGTTTCATATGAATGTAATGTGAGACATTTGATACCTGAAGGT  775

seq1  CTGCTTGTATTTGTGGGTTTATTTATCACAAAAAAAATCATTGTCAAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTATTTGTGGGTTTATTTATCACAAAAAAAATCATTGTCAAATC  825

seq1  ATAAATCCTATTAAAGCACAAATCAGTTTTTCATTTAAACTGAGAATAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCCTATTAAAGCACAAATCAGTTTTTCATTTAAACTGAGAATAAA  875

seq1  AGAAGGACAATTGCTGTCATCATAATTATTTATAATTGTTCTAAAATATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACAATTGCTGTCATCATAATTATTTATAATTGTTCTAAAATATA  925

seq1  AAAGTGGAAACATGAGGGAAATTATTATTTACAAATTGCGTGATTATATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAAACATGAGGGAAATTATTATTTACAAATTGCGTGATTATATC  975

seq1  ATCTAAAAATCTTAAGCATAGTAAGATTTGGAGCTAGTAAAAGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAATCTTAAGCATAGTAAGATTTGGAGCTAGTAAAAGAATTC  1023