BAC Information

Click to search

BAC

Clone NameB6Ng01-145K18
Chromosome2 (Build37)
Map Location 152,805,861 - 152,977,098
singlet/doubletdoublet
Overlap geneTtll9, Pdrg1, Xkr7, BC020535, Hck
Upstream gene5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15
Downstream geneTm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145K18.bB6Ng01-145K18.g
ACCDH943012DH943013
length4661,081
definitionDH943012|Mus musculus domesticus DNA, BAC clone: B6Ng01-145K18, 5' end.DH943013|Mus musculus domesticus DNA, BAC clone: B6Ng01-145K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,976,627 - 152,977,098)(152,805,861 - 152,806,958)
sequence
agtcattccaggcaaatgagacataccaacttggaggccctgagagtggc
ggattgcagatgactagagtcagaaagagattgtgaagtcctcccaccca
ctcaacagctgcagtgtgtgtggtgtggtgtctgagagtgggcccagcaa
gttgggcgtgtcaaggcactgatggggcttctggctctgctcatgtcctt
actgctgtcaaggctgctgctgatactggctctcagtggccgtgtagaag
tcatccagcacactctggatgtattcaaaggtgggccgttcctcggggcg
gttcttccagcagcggatcatgatattgtagagctcttctggacagttat
ctggtcgaggcatacggtacccatgctctagtgcccgaatcacctctggg
tttgacatacctgaaaaagaggagtgaaattaaatgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
gaattcatctgtaccttgtctcccattccactgctggaggtggaacccag
cctcatgcattctagacagcgcatgaggccattaatgcccctcccacttt
tctggcttgagtaatattccatttcatggatgtaccacattctccttatt
agcagatgggcatctggactgtttacacgctaggattgttataaataaag
gctgtgaacattcacgtatgagttttgagtagatatgcatttctcctggg
agaaacacctacaagtagaattgttgggtcttgtgggaactttgcattta
aattcttgaggaagtgttagaatcctctgaagtagcttctccattttgtt
tccagcagcagcatatgtaatcccagtattcccacatccctgtcaacact
cattattatccattaataaggaattgacttccaggtacatgtcagctggg
gtgttgtcttagttagggctttactgctgtgaacagacaccatgaccaag
gcaactcttataaaggacaacgtttaattggggctggcttacaggttcag
tccagtattatcaaggttggggagcatggcagcatccaggcaggcatggt
gcaggaggagctgagagttctgcatcttcatctgatcgtagccaggagaa
gactggcttccccgtagctaggaggaggatctcaaagcccaaacccacag
agacacacctcctccaaaaaggtcacacctcctaatagtgccactccctg
ggccaagcacagaccaaccaccacggatgtcattgtgatttttcttattt
ttgtgattaatgacagcatattttcctgtgcaggtaggtcatgtataaat
ctttacagaaacatccataaagccccttggcctctttaaaagaaactcag
acacaaattgaaatggaaatttttctttaatttttaaaactagcatcaaa
atagttttaagcatacttcagcacaacataccacaccaacaacacaccac
acacacaacctgggccttcgtcaggatcactgcccttgcgtgtacggctg
gccgcaagccacccggccactttgacgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152976627_152977098
seq2: B6Ng01-145K18.b_49_520 (reverse)

seq1  CACACACACACACACACACACACACACACACATTTAATTTCACTCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATTTAATTTCACTCCTCTT  50

seq1  TTTCAGGTATGTCAAACCCAGAGGTGATTCGGGCACTAGAGCATGGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTATGTCAAACCCAGAGGTGATTCGGGCACTAGAGCATGGGTAC  100

seq1  CGTATGCCTCGACCAGATAACTGTCCAGAAGAGCTCTACAATATCATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGCCTCGACCAGATAACTGTCCAGAAGAGCTCTACAATATCATGAT  150

seq1  CCGCTGCTGGAAGAACCGCCCCGAGGAACGGCCCACCTTTGAATACATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGCTGGAAGAACCGCCCCGAGGAACGGCCCACCTTTGAATACATCC  200

seq1  AGAGTGTGCTGGATGACTTCTACACGGCCACTGAGAGCCAGTATCAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGCTGGATGACTTCTACACGGCCACTGAGAGCCAGTATCAGCAG  250

seq1  CAGCCTTGACAGCAGTAAGGACATGAGCAGAGCCAGAAGCCCCATCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGACAGCAGTAAGGACATGAGCAGAGCCAGAAGCCCCATCAGTG  300

seq1  CCTTGACACGCCCAACTTGCTGGGCCCACTCTCAGACACCACACCACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGACACGCCCAACTTGCTGGGCCCACTCTCAGACACCACACCACACA  350

seq1  CACTGCAGCTGTTGAGTGGGTGGGAGGACTTCACAATCTCTTTCTGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGCTGTTGAGTGGGTGGGAGGACTTCACAATCTCTTTCTGACTC  400

seq1  TAGTCATCTGCAATCCGCCACTCTCAGGGCCTCCAAGTTGGTATGTCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCTGCAATCCGCCACTCTCAGGGCCTCCAAGTTGGTATGTCTCA  450

seq1  TTTGCCTGGAATGACTGAATTC  472
      ||||||||||||||||||||||
seq2  TTTGCCTGGAATGACTGAATTC  472

seq1: chr2_152805861_152806958
seq2: B6Ng01-145K18.g_68_1148

seq1  GAATTCATCTGTACCTTGTCTCCCATTCCACTGCTGGAGGTGGAACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTACCTTGTCTCCCATTCCACTGCTGGAGGTGGAACCCAG  50

seq1  CCTCATGCATTCTAGACAGCGCATGAGGCCATTAATGCCCCTCCCACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCATTCTAGACAGCGCATGAGGCCATTAATGCCCCTCCCACTTT  100

seq1  TCTGGCTTGAGTAATATTCCATTTCATGGATGTACCACATTCTCCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTGAGTAATATTCCATTTCATGGATGTACCACATTCTCCTTATT  150

seq1  AGCAGATGGGCATCTGGACTGTTTACACGCTAGGATTGTTATAAATAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGGGCATCTGGACTGTTTACACGCTAGGATTGTTATAAATAAAG  200

seq1  GCTGTGAACATTCACGTATGAGTTTTGAGTAGATATGCATTTCTCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAACATTCACGTATGAGTTTTGAGTAGATATGCATTTCTCCTGGG  250

seq1  AGAAACACCTACAAGTAGAATTGTTGGGTCTTGTGGGAACTTTGCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACCTACAAGTAGAATTGTTGGGTCTTGTGGGAACTTTGCATTTA  300

seq1  AATTCTTGAGGAAGTGTTAGAATCCTCTGAAGTAGCTTCTCCATTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAGGAAGTGTTAGAATCCTCTGAAGTAGCTTCTCCATTTTGTT  350

seq1  TCCAGCAGCAGCATATGTAATCCCAGTATTCCCACATCCCTGTCAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGCAGCATATGTAATCCCAGTATTCCCACATCCCTGTCAACACT  400

seq1  CATTATTATCCATTAATAAGGAATTGACTTCCAGGTACATGTCAGCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTATCCATTAATAAGGAATTGACTTCCAGGTACATGTCAGCTGGG  450

seq1  GTGTTGTCTTAGTTAGGGCTTTACTGCTGTGAACAGACACCATGACCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTCTTAGTTAGGGCTTTACTGCTGTGAACAGACACCATGACCAAG  500

seq1  GCAACTCTTATAAAGGACAACGTTTAATTGGGGCTGGCTTACAGGTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTATAAAGGACAACGTTTAATTGGGGCTGGCTTACAGGTTCAG  550

seq1  TCCAGTATTATCAAGGTTGGGGAGCATGGCAGCATCCAGGCAGGCATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATTATCAAGGTTGGGGAGCATGGCAGCATCCAGGCAGGCATGGT  600

seq1  GCAGGAGGAGCTGAGAGTTCTGCATCTTCATCTGATCGTAGCCAGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGAGCTGAGAGTTCTGCATCTTCATCTGATCGTAGCCAGGAGAA  650

seq1  GACTGGCTTCCCCGTAGCTAGGAGGAGGATCTCAAAGCCCAAACCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTCCCCGTAGCTAGGAGGAGGATCTCAAAGCCCAAACCCACAG  700

seq1  AGACACACCTCCTCCAAAAAGGTCACACCTCCTAATAGTGCCACTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACCTCCTCCAAAAAGGTCACACCTCCTAATAGTGCCACTCCCTG  750

seq1  GGCCAAGCACAGACCAACCACCACGGATGTCATTGTGATTTTTCTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCACAGACCAACCACCACGGATGTCATTGTGATTTTTCTTATTT  800

seq1  TTGTGATTAATGACAGCATATTTTCCTGTGCAGGTAGGTCATGTATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTAATGACAGCATATTTTCCTGTGCAGGTAGGTCATGTATAAAT  850

seq1  CTTTACAGAAACATCCATAAAGCCCCTTGGCCTCTTTAAAAAGAAACTCA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTACAGAAACATCCATAAAGCCCCTTGGCCTCTTT-AAAAGAAACTCA  899

seq1  GGACACAAATTGAAAATGGAAATTTTTTCTTTAATTTTTTAAAAACTAGC  950
       ||||||||||| ||||||||| ||||||||||||||||  |||||||||
seq2  -GACACAAATTG-AAATGGAAA-TTTTTCTTTAATTTTT--AAAACTAGC  944

seq1  ATCCAAAATAGTTTCTAAGCATACTTCAGCCACACACACACACACACACA  1000
      || ||||||||||| ||||||||||||||   |||| ||| || ||||| 
seq2  AT-CAAAATAGTTT-TAAGCATACTTCAG---CACA-ACATAC-CACACC  987

seq1  CACACACACACACACACACACACACTGGGCACTTCGTCAGGTATCACTGC  1050
       ||| |||||| ||||||||||  |||||| |||||||||| ||||||||
seq2  AACA-ACACAC-CACACACACAACCTGGGC-CTTCGTCAGG-ATCACTGC  1033

seq1  CC-TGCGTGTACCGCTGCCCCGCATGCACACCGGCCACTTTGACGTTTG  1098
      || ||||||||| ||||  ||||| ||   |||||||||||||||||||
seq2  CCTTGCGTGTACGGCTG-GCCGCAAGCCACCCGGCCACTTTGACGTTTG  1081