BAC Information

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BAC

Clone NameB6Ng01-145L02
Chromosome2 (Build37)
Map Location 74,868,638 - 75,014,369
singlet/doubletdoublet
Overlap geneA330043C09Rik
Upstream geneLOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
Downstream geneLOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145L02.bB6Ng01-145L02.g
ACCDH943028DH943029
length1,0901,021
definitionDH943028|Mus musculus domesticus DNA, BAC clone: B6Ng01-145L02, 5' end.DH943029|Mus musculus domesticus DNA, BAC clone: B6Ng01-145L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,868,638 - 74,869,724)(75,013,341 - 75,014,369)
sequence
gaattctttcacaatagagtatttcccacttacctagattcttgacccag
gtcaccaagggaaccgctgcctatcacacagcatacccaaggtatgatga
gaaaagacttaggacacatgaagccctgacccacatccaattgcgtagtg
ctgagaatatggcttaaatgtcttgtgttccagaattcatatcaataaaa
tagaaaccccccccctcacttgctaattctcatcaggaaagtttgctgaa
acatggaactggttccacccagagcttctgacacattagctctaggctgg
gacttaggcacatgcatttttcacaagttcccacgggatgctgcaggtcc
agggccacacaccgagaacttctatctggcctaattgctgtagattatag
gctatagttacagaaaacacaggatacagtgaactagtcgtttttttgat
ggaaagtaaagaagttgtttattttgttagtaatttggcatattattgta
tttgatatgttatacgagtgaggaatccagataattatttcatttctgaa
atttgtaatttttttttttttttttgtaaagcaaaacagaaaattcagac
cccaagcttacttcggtcttactcggagctctggttctcccatctgcaca
caagaaaaaccaatagttttgttggaagatattggaaggaaagggcgggg
gcaaagaattatctttgaagagttggattacattttcatccatccttcat
ccttttcatgttctccctgtgctcagagtctagacccggtagccctagtg
acgtcaaggaacacaaagcagtctgtggtccaatggctgtttgtctgcct
cttctcttttctctccctcccctcagtgatgggtaacaagaatgaggatg
accccactgcagactcaaaatgatggacatgggtctcacatggacttaaa
atcatcaggcaagccatgggtggctactacccgtatctctagccactttg
gggtggtggagcatcttgaggctagcccggactctctggtagcaccaggc
cagcttagctacagaagtgagactcagtctgaatgaaata
gaattcttgtgagggttaatggagatcaattacataaagcacaggccttg
aatgaaccttaataagtgttagctattatcaaaaaacagaatcatacaca
attcatctacaacctttctgtatccacagctctgctttgtagtattttat
aaaaggaattctgtgtgttttcatttctgcgagaccctcttccttttatc
ctttcaaagcctgcatgggaccttcccagggaatttggggaggctaactt
tggcctctctaaattcatcaacgagtctgggtttatatctagaggagatt
tgaaatcagtgtgtatgatgtcctcagtgggatttagcacaactgttggt
agttgctgcttccctgtcagagagtggatcagtttcttctggaatttttt
cctaccaggcctagctgtctttctggttgaatagtcattaacaaactttt
ggcagagtgttatccaatggcaggaagaagagcagcttaatagagctttg
aaacgtgtccaccctgctggaaatcgcatctgctactgtcaatcttacct
ttccagagtctctaatgtattatccttatttccattttacagaagacatt
actgaggctctaggaggtgaaaccaatttggtgagagtcagaccaaagct
tgtatctaggtcattgagtttcaaagtgtgcatactttgatattacataa
tactgcctctggggatgtttacaaggaaagaaattaagtttggaattctg
acaccatgttgaatgtattaaatttttgaggggcttcagacctagaaata
gtctccattaaagtgattctatgtgttacctccaggcccctatttctgac
tgtcacccctatcatgtgaaaccacaaactttcaaaggtctggtagcata
aagggcatctcttttctcttttgtccttgtcctctgctgcctgccatatt
ttcccggtgtgtaaaatgcacagagcagagggacttagcaaatgaacaga
agaaaaattccaacttttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74868638_74869724
seq2: B6Ng01-145L02.b_45_1134

seq1  GAATTCTTTCACAATAGAGTATTTCCCACTTACCTAGATTCTTGACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACAATAGAGTATTTCCCACTTACCTAGATTCTTGACCCAG  50

seq1  GTCACCAAGGGAACCGCTGCCTATCACACAGCATACCCAAGGTATGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAAGGGAACCGCTGCCTATCACACAGCATACCCAAGGTATGATGA  100

seq1  GAAAAGACTTAGGACACATGAAGCCCTGACCCACATCCAATTGCGTAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACTTAGGACACATGAAGCCCTGACCCACATCCAATTGCGTAGTG  150

seq1  CTGAGAATATGGCTTAAATGTCTTGTGTTCCAGAATTCATATCAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATATGGCTTAAATGTCTTGTGTTCCAGAATTCATATCAATAAAA  200

seq1  TAGAAACCCCCCCCCTCACTTGCTAATTCTCATCAGGAAAGTTTGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCCCCCCCCTCACTTGCTAATTCTCATCAGGAAAGTTTGCTGAA  250

seq1  ACATGGAACTGGTTCCACCCAGAGCTTCTGACACATTAGCTCTAGGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAACTGGTTCCACCCAGAGCTTCTGACACATTAGCTCTAGGCTGG  300

seq1  GACTTAGGCACATGCATTTTTCACAAGTTCCCACGGGATGCTGCAGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGCACATGCATTTTTCACAAGTTCCCACGGGATGCTGCAGGTCC  350

seq1  AGGGCCACACACCGAGAACTTCTATCTGGCCTAATTGCTGTAGATTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCACACACCGAGAACTTCTATCTGGCCTAATTGCTGTAGATTATAG  400

seq1  GCTATAGTTACAGAAAACACAGGATACAGTGAACTAGTCGTTTTTTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTTACAGAAAACACAGGATACAGTGAACTAGTCGTTTTTTTGAT  450

seq1  GGAAAGTAAAGAAGTTGTTTATTTTGTTAGTAATTTGGCATATTATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTAAAGAAGTTGTTTATTTTGTTAGTAATTTGGCATATTATTGTA  500

seq1  TTTGATATGTTATACGAGTGAGGAATCCAGATAATTATTTCATTTCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATGTTATACGAGTGAGGAATCCAGATAATTATTTCATTTCTGAA  550

seq1  ATTTGTAATTTTTTTTTTTTTTTTTGTAAAGCAAAACAGAAAATTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAATTTTTTTTTTTTTTTTTGTAAAGCAAAACAGAAAATTCAGAC  600

seq1  CCCAAGCTTACTTCGGTCTTACTCGGAGCTCTGGTTCTCCCATCTGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTTACTTCGGTCTTACTCGGAGCTCTGGTTCTCCCATCTGCACA  650

seq1  CAAGAAAAACCAATAGTTTTGTTGGAAGATATTGGAAGGAAAGGGCGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAACCAATAGTTTTGTTGGAAGATATTGGAAGGAAAGGGCGGGG  700

seq1  GCAAAGAATTATCTTTGAAGAGTTGGATTACA-TTTCATCCATCCTTCAT  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCAAAGAATTATCTTTGAAGAGTTGGATTACATTTTCATCCATCCTTCAT  750

seq1  CC-TTCCATGTTCTCCCTGTGCTCAGAGTCCAGA-CCGGTAGCCCTAGTG  797
      || || |||||||||||||||||||||||| ||| |||||||||||||||
seq2  CCTTTTCATGTTCTCCCTGTGCTCAGAGTCTAGACCCGGTAGCCCTAGTG  800

seq1  ACGTCAAGGAACACAAAGCAGTCTGTGGTCCAATGGCTGTTTGTCTGCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAAGGAACACAAAGCAGTCTGTGGTCCAATGGCTGTTTGTCTGCCT  850

seq1  CTTCTCTTTTCTCTCCCTCCCCTCAGTGATGGGTAACAAGAATGAGGATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTTCTCTCCCTCCCCTCAGTGATGGGTAACAAGAATGAGGATG  900

seq1  ACCCCACTGCAGACTCAAAAATGATGGACATGGGTCTCACATGGACTTAA  947
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACCCCACTGCAGACTC-AAAATGATGGACATGGGTCTCACATGGACTTAA  949

seq1  AATCATCAAGCAAGCCAT-GGTGGCTAACACCCGTAATCTC-AG-CAC-T  993
      |||||||| ||||||||| ||||||||  |||||| ||||| || ||| |
seq2  AATCATCAGGCAAGCCATGGGTGGCTACTACCCGT-ATCTCTAGCCACTT  998

seq1  TGGGGTGGTGAGGCATC-TGAGGCTAGCCCGGACTCTCTGGTAAGCACCA  1042
      ||||||||||  ||||| |||||||||||||||||||||||| |||||||
seq2  TGGGGTGGTGGAGCATCTTGAGGCTAGCCCGGACTCTCTGGT-AGCACCA  1047

seq1  GGCCAGCTTAAGCTACAAGAGTGAGACTCAGTCTGAAATGAAATA  1087
      ||||||||| |||||||  |||||||||||||||| |||||||||
seq2  GGCCAGCTT-AGCTACAGAAGTGAGACTCAGTCTG-AATGAAATA  1090

seq1: chr2_75013341_75014369
seq2: B6Ng01-145L02.g_69_1089 (reverse)

seq1  TTTAAAAGTTGGGATTTTTCTTCTGTTCATTTGCTAAGTTCCCTCTGCTC  50
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TTTAAAAGTTGGAATTTTTCTTCTGTTCATTTGCTAAG-TCCCTCTGCTC  49

seq1  TGTGCATTTTAACACA-CTGGAAAATATGGCAGGCAGCAGAGGACAAGGA  99
      |||||||||| ||||| | |||||||||||||||||||||||||||||||
seq2  TGTGCATTTT-ACACACCGGGAAAATATGGCAGGCAGCAGAGGACAAGGA  98

seq1  CAAAGGAGAAAAGAGATGGCACCTTTATGCTACCAGACCTTTGGAAGTTT  149
      |||| |||||||||||||   |||||||||||||||||||||| ||||||
seq2  CAAAAGAGAAAAGAGATG--CCCTTTATGCTACCAGACCTTTGAAAGTTT  146

seq1  GTGGTTTCACATGATTAGGGGTTGACAGTTCAGAAATAGGGGCCTGGAGG  199
      |||||||||||||| |||||| |||||| |||||||||||||||||||||
seq2  GTGGTTTCACATGA-TAGGGG-TGACAG-TCAGAAATAGGGGCCTGGAGG  193

seq1  TAACAACATAGAATCACTTTAATGGAGACTATTTCTAGGTCTGAAAGCCC  249
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAC-ACATAGAATCACTTTAATGGAGACTATTTCTAGGTCTG-AAGCCC  241

seq1  CTCAAAAATTTAATACATTCAACATGGTGTCAGAATTCCAAACCTTAATT  299
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAAAAATTTAATACATTCAACATGGTGTCAGAATTCCAAA-CTTAATT  290

seq1  TCTTTCCTTGTAAACATCCCCAGAGGCAGTATTATGTAATATC-AAGTAT  348
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTTCCTTGTAAACATCCCCAGAGGCAGTATTATGTAATATCAAAGTAT  340

seq1  GCACACTTTGAAACTCAATGACCTAGATACAAGCTTTGGTCTGACTCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTTGAAACTCAATGACCTAGATACAAGCTTTGGTCTGACTCTCA  390

seq1  CCAAATTGGTTTCACCTCCTAGAGCCTCAGTAATGTCTTCTGTAAAATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGGTTTCACCTCCTAGAGCCTCAGTAATGTCTTCTGTAAAATGG  440

seq1  AAATAAGGATAATACATTAGAGACTCTGGAAAGGTAAGATTGACAGTAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGATAATACATTAGAGACTCTGGAAAGGTAAGATTGACAGTAGC  490

seq1  AGATGCGATTTCCAGCAGGGTGGACACGTTTCAAAGCTCTATTAAGCTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCGATTTCCAGCAGGGTGGACACGTTTCAAAGCTCTATTAAGCTGC  540

seq1  TCTTCTTCCTGCCATTGGATAACACTCTGCCAAAAGTTTGTTAATGACTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCTGCCATTGGATAACACTCTGCCAAAAGTTTGTTAATGACTA  590

seq1  CTCAACCAGAAAGACAGCTAGGCCTGGTAGGAAAAAATTCCAGAAGAAAC  648
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCAGAAAGACAGCTAGGCCTGGTAGGAAAAAATTCCAGAAGAAAC  640

seq1  TGATCCACTCTCTGACAGGGAAGCAGCAACTACCAACAGTTGTGCTAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACTCTCTGACAGGGAAGCAGCAACTACCAACAGTTGTGCTAAAT  690

seq1  CCCACTGAGGACATCATACACACTGATTTCAAATCTCCTCTAGATATAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGGACATCATACACACTGATTTCAAATCTCCTCTAGATATAAA  740

seq1  CCCAGACTCGTTGATGAATTTAGAGAGGCCAAAGTTAGCCTCCCCAAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTCGTTGATGAATTTAGAGAGGCCAAAGTTAGCCTCCCCAAATT  790

seq1  CCCTGGGAAGGTCCCATGCAGGCTTTGAAAGGATAAAAGGAAGAGGGTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAAGGTCCCATGCAGGCTTTGAAAGGATAAAAGGAAGAGGGTCT  840

seq1  CGCAGAAATGAAAACACACAGAATTCCTTTTATAAAATACTACAAAGCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGAAATGAAAACACACAGAATTCCTTTTATAAAATACTACAAAGCAG  890

seq1  AGCTGTGGATACAGAAAGGTTGTAGATGAATTGTGTATGATTCTGTTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGATACAGAAAGGTTGTAGATGAATTGTGTATGATTCTGTTTTT  940

seq1  TGATAATAGCTAACACTTATTAAGGTTCATTCAAGGCCTGTGCTTTATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAGCTAACACTTATTAAGGTTCATTCAAGGCCTGTGCTTTATGT  990

seq1  AATTGATCTCCATTAACCCTCACAAGAATTC  1029
      |||||||||||||||||||||||||||||||
seq2  AATTGATCTCCATTAACCCTCACAAGAATTC  1021