BAC Information

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BAC

Clone NameB6Ng01-145M17
Chromosome2 (Build37)
Map Location 148,557,501 - 148,693,786
singlet/doubletdoublet
Overlap geneNapb, Cstl1, Cst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1
Downstream geneCst3, OTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M17.bB6Ng01-145M17.g
ACCDH943104DH943105
length1,087832
definitionDH943104|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M17, 5' end.DH943105|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,692,751 - 148,693,786)(148,557,501 - 148,558,332)
sequence
gaattcttgtctagcatgtacatggcccaagttcaaccccaatattacat
agtactgtactagtctcatttcagttgtgataaaatatcatgggatgacc
tgatttaggcaatccctcattgagacttcctacccaggtgattcttcatt
acttcgagttgacaattaaaactaaacacccagacaattatagcagtacc
atctaaggttataaccttagatcacagagcaccataactaacgcaaaagt
tagaaatactatgaaaattataagaatgtgaccggcacaaagtcaagaag
ggatcacactgcaaaagtgacacctgtagatttgctcaaatgtatggtta
cctcaaacgtttgatttgaaaaaaagaaagcagtatttgtgaaaggcaat
acagcaaaagacaatacaaagtcatttatgcttatacaaagtggacggct
gaaatgtgtgcatggggtaggtctgggaaaagagcatgagctcccatgcc
ctttccattcgtccatctccatccccacttcccacgtgtggaaatgcaag
gaccctcttttggagaacatttttgaagattcattgcatatacacagtca
cccatagttaagatttctatttctgtgataagtatcataaccatagcagc
ttaaggatgaaaggttttatttcaccttacagtttgtactccatcatcca
aaggaagtcagtgaagcaactcaatgcaggaacctagagacagagactga
tgcagaggctgtggaggagttctgtttattgccttgctcctcatgacttg
ctcagcttcctttccaggaataccctcctggagagatgtacttacttaat
cacatcaatcatcatcccagccaatgctctgttgctgtgaagagatccca
tgaccacagcaactcccttatataaacaaaaacaaacaaacaaaccattt
aattggatttgcttaccctttagagattagtcattatcatcatagcagac
tcagtagacatggtgttgggaaaagctgagttctatacccagattccaag
gcaccgaaaagaaaatctcttggacttgttggaccct
gaattccagaacctcacagtcctggctcccccgggggatttacgggccca
accaggggaaatgaataaatctggtccaccaggaggggtggcatccttga
agaggcagcttggcgcggaccctggagctagcaccggaccgttggcgacg
catgggacttgggggaccacagagatctccgaggacgcgtaggtgttctg
ggttgtttaagggtgcctggggattgtgagctagaggttctccgggtgtg
ggtgaggggtgtccaaggcctgaggatccccaaaaggttctggggcttgc
agtgtgtgctgactggagagacaccccagacacggcccaagggatgcgat
gaggccctggatgctacgggacccaaaacagagcgtgggccactgggaat
cccgtaaccctaagcagttgcgcggggtactctgcggtggcagccggctg
ggcaggggatcgggcaccaagacccctaagggcaagacctctggcgctca
cccgaacaaccctcggaggaaagagtgggaagccttcactcgcttctcgg
cctccgccataagctggaccgcttctcgctccttccctgcgttgtccatg
tcacccgctgcagccaaagcctcctctgctgactagctaggctcccggga
cgacttagccctccctccagcaggtgcggacacgcaggcgcggcacgcgt
ggcctttcgggatctgtagtcctacattccaccttaatgccagtttgtca
gagaccacaactacagttcccagcaggctgctgggcagggccgggcgttc
tcccggactctctggaggagggggaaagggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_148692751_148693786
seq2: B6Ng01-145M17.b_108_1132 (reverse)

seq1  AGGGTCCAAACCAGGTCCAGAGGATTTTCTCTTCCTGTTGCCTGTGAATC  50
      |||||||||  || |||||   |||||||| |||  | |||||  |||||
seq2  AGGGTCCAA--CAAGTCCAAGAGATTTTCTTTTC--GGTGCCTTGGAATC  46

seq1  TGGGTATAGAACTCAGCTTCTCCC-ACACCATGTCTACCTGAGTTCTGCT  99
      ||||||||||||||||||| |||| |||||||||||| ||||| ||||||
seq2  TGGGTATAGAACTCAGCTTTTCCCAACACCATGTCTA-CTGAG-TCTGCT  94

seq1  ATGATGATAATGGACTAAATCTCTGAAAGGGTAAGCAAATCCAATTAAAT  149
      ||||||||||| |||| ||||||| |||||||||||||||||||||||||
seq2  ATGATGATAAT-GACT-AATCTCT-AAAGGGTAAGCAAATCCAATTAAAT  141

seq1  GGTTTTGTTTTGTTTTGTTTTTGTTTATATAAGGGAGTTGCTGTGGTCAT  199
      || |||||||   |||||||||||||||||||||||||||||||||||||
seq2  GG-TTTGTTT--GTTTGTTTTTGTTTATATAAGGGAGTTGCTGTGGTCAT  188

seq1  GGGATCTCTTCACAGCAACAGAGCATTGGCTGGGATGATGATTGATGTGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTCTTCACAGCAACAGAGCATTGGCTGGGATGATGATTGATGTGA  238

seq1  TTAAGTAAGTACATCTCTCCAGGAGGGTATTCCTGGAAAGGAAGCTGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAAGTACATCTCTCCAGGAGGGTATTCCTGGAAAGGAAGCTGAGC  288

seq1  AAGTCATGAGGAGCAAGGCAATAAACAGAACTCCTCCACAGCCTCTGCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGAGGAGCAAGGCAATAAACAGAACTCCTCCACAGCCTCTGCAT  338

seq1  CAGTCTCTGTCTCTAGGTTCCTGCATTGAGTTGCTTCACTGACTTCCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGTCTCTAGGTTCCTGCATTGAGTTGCTTCACTGACTTCCTTT  388

seq1  GGATGATGGAGTACAAACTGTAAGGTGAAATAAAACCTTTCATCCTTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGGAGTACAAACTGTAAGGTGAAATAAAACCTTTCATCCTTAAG  438

seq1  CTGCTATGGTTATGATACTTATCACAGAAATAGAAATCTTAACTATGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATGGTTATGATACTTATCACAGAAATAGAAATCTTAACTATGGGT  488

seq1  GACTGTGTATATGCAATGAATCTTCAAAAATGTTCTCCAAAAGAGGGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTATATGCAATGAATCTTCAAAAATGTTCTCCAAAAGAGGGTCC  538

seq1  TTGCATTTCCACACGTGGGAAGTGGGGATGGAGATGGACGAATGGAAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCCACACGTGGGAAGTGGGGATGGAGATGGACGAATGGAAAGG  588

seq1  GCATGGGAGCTCATGCTCTTTTCCCAGACCTACCCCATGCACACATTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAGCTCATGCTCTTTTCCCAGACCTACCCCATGCACACATTTCA  638

seq1  GCCGTCCACTTTGTATAAGCATAAATGACTTTGTATTGTCTTTTGCTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCCACTTTGTATAAGCATAAATGACTTTGTATTGTCTTTTGCTGTA  688

seq1  TTGCCTTTCACAAATACTGCTTTCTTTTTTTCAAATCAAACGTTTGAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCACAAATACTGCTTTCTTTTTTTCAAATCAAACGTTTGAGGT  738

seq1  AACCATACATTTGAGCAAATCTACAGGTGTCACTTTTGCAGTGTGATCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACATTTGAGCAAATCTACAGGTGTCACTTTTGCAGTGTGATCCC  788

seq1  TTCTTGACTTTGTGCCGGTCACATTCTTATAATTTTCATAGTATTTCTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACTTTGTGCCGGTCACATTCTTATAATTTTCATAGTATTTCTAA  838

seq1  CTTTTGCGTTAGTTATGGTGCTCTGTGATCTAAGGTTATAACCTTAGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCGTTAGTTATGGTGCTCTGTGATCTAAGGTTATAACCTTAGATG  888

seq1  GTACTGCTATAATTGTCTGGGTGTTTAGTTTTAATTGTCAACTCGAAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTATAATTGTCTGGGTGTTTAGTTTTAATTGTCAACTCGAAGTA  938

seq1  ATGAAGAATCACCTGGGTAGGAAGTCTCAATGAGGGATTGCCTAAATCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAATCACCTGGGTAGGAAGTCTCAATGAGGGATTGCCTAAATCAG  988

seq1  GTCATCCCATGATATTTTATCACAACTGAAATGAGAC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  GTCATCCCATGATATTTTATCACAACTGAAATGAGAC  1025

seq1: chr2_148557501_148558332
seq2: B6Ng01-145M17.g_68_899

seq1  GAATTCCAGAACCTCACAGTCCTGGCTCCCCCGGGGGATTTACGGGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACCTCACAGTCCTGGCTCCCCCGGGGGATTTACGGGCCCA  50

seq1  ACCAGGGGAAATGAATAAATCTGGTCCACCAGGAGGGGTGGCATCCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGGAAATGAATAAATCTGGTCCACCAGGAGGGGTGGCATCCTTGA  100

seq1  AGAGGCAGCTTGGCGCGGACCCTGGAGCTAGCACCGGACCGTTGGCGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGCTTGGCGCGGACCCTGGAGCTAGCACCGGACCGTTGGCGACG  150

seq1  CATGGGACTTGGGGGACCACAGAGATCTCCGAGGACGCGTAGGTGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGACTTGGGGGACCACAGAGATCTCCGAGGACGCGTAGGTGTTCTG  200

seq1  GGTTGTTTAAGGGTGCCTGGGGATTGTGAGCTAGAGGTTCTCCGGGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTAAGGGTGCCTGGGGATTGTGAGCTAGAGGTTCTCCGGGTGTG  250

seq1  GGTGAGGGGTGTCCAAGGCCTGAGGATCCCCAAAAGGTTCTGGGGCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGGTGTCCAAGGCCTGAGGATCCCCAAAAGGTTCTGGGGCTTGC  300

seq1  AGTGTGTGCTGACTGGAGAGACACCCCAGACACGGCCCAAGGGATGCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGCTGACTGGAGAGACACCCCAGACACGGCCCAAGGGATGCGAT  350

seq1  GAGGCCCTGGATGCTACGGGACCCAAAACAGAGCGTGGGCCACTGGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGGATGCTACGGGACCCAAAACAGAGCGTGGGCCACTGGGAAT  400

seq1  CCCGTAACCCTAAGCAGTTGCGCGGGGTACTCTGCGGTGGCAGCCGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTAACCCTAAGCAGTTGCGCGGGGTACTCTGCGGTGGCAGCCGGCTG  450

seq1  GGCAGGGGATCGGGCACCAAGACCCCTAAGGGCAAGACCTCTGGCGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGATCGGGCACCAAGACCCCTAAGGGCAAGACCTCTGGCGCTCA  500

seq1  CCCGAACAACCCTCGGAGGAAAGAGTGGGAAGCCTTCACTCGCTTCTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAACAACCCTCGGAGGAAAGAGTGGGAAGCCTTCACTCGCTTCTCGG  550

seq1  CCTCCGCCATAAGCTGGACCGCTTCTCGCTCCTTCCCTGCGTTGTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCCATAAGCTGGACCGCTTCTCGCTCCTTCCCTGCGTTGTCCATG  600

seq1  TCACCCGCTGCAGCCAAAGCCTCCTCTGCTGACTAGCTAGGCTCCCGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCGCTGCAGCCAAAGCCTCCTCTGCTGACTAGCTAGGCTCCCGGGA  650

seq1  CGACTTAGCCCTCCCTCCAGCAGGTGCGGACACGCAGGCGCGGCACGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTAGCCCTCCCTCCAGCAGGTGCGGACACGCAGGCGCGGCACGCGT  700

seq1  GGCCTTTCGGGATCTGTAGTCCTACATTCCACCTTAATGCCAGTTTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCGGGATCTGTAGTCCTACATTCCACCTTAATGCCAGTTTGTCA  750

seq1  GAGACCACAACTACAGTTCCCAGCAGGCTGCTGGGCAGGGCCGGGCGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCACAACTACAGTTCCCAGCAGGCTGCTGGGCAGGGCCGGGCGTTC  800

seq1  TCCCGGACTCCCTGGAGGAGGGGGAAGGGGCG  832
      |||||||||| ||||||||||||||| |||||
seq2  TCCCGGACTCTCTGGAGGAGGGGGAAAGGGCG  832