BAC Information

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BAC

Clone NameB6Ng01-145N12
Chromosome2 (Build37)
Map Location 169,862,781 - 170,056,957
singlet/doubletdoublet
Overlap geneLOC100043910, Zfp217
Upstream geneEG668954, Tshz2, LOC100043737
Downstream geneSilg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145N12.bB6Ng01-145N12.g
ACCDH943138DH943139
length1,082639
definitionDH943138|Mus musculus domesticus DNA, BAC clone: B6Ng01-145N12, 5' end.DH943139|Mus musculus domesticus DNA, BAC clone: B6Ng01-145N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,862,781 - 169,863,880)(170,056,320 - 170,056,957)
sequence
gaattcaattatttttattcttcaaagctaatttaaaatttaagggatgc
cattacatgaaataatagggaagaaatgtaatcgcaatctctgggaacag
ttggtcgtccttagaatttaaaaaaaaaaaaatgtgatcgctgacgattt
ggaaatgtttcttcatctgtgaacagatgagggattgaagtctctgctct
tttcagtatatttaatttaaacggagaagagagttgacggtggcggactc
cccgtgctgggagatcattgggcataattgccaaggcagctgaggggggc
ggggcagcctgggagactcacgtggcgttctccttgatgggaaccaagtc
ttcctgaaatgccagggcttcttgaatttgccatcttgttcctcacacag
actgttagaggtttcactgtccccttctcttgtaggcagtgcggtttctt
ccttctttcacgcactcattcattcactcactcaagcattcattcatggt
gaagtaaccgtcccagactccccgccacagcagcgggagtgacagacccg
tcacagccctcagccacgcagttggaggaattctcaaacctggatctgta
aaagtcacagggcgagcttttaaagagtaaggactgggacttgggctcag
tcagcgcccgcctgtcattccagcgctgaagacagacacctgaactcccc
ggggcctgccaaccagctagtccagcctagtcagggaatcaaagagagat
taataattaattaattaaaagcaaataaagtcagagccaggcttggtggc
cacgtgcctttcatcccagcgctcgggaggcagaagacagatagatcttt
gtgagtttcaggccagcttgttttatggagtgaggactgtagagtaagaa
cccttttcttgaaagaaagaaaggaaggagggaaggaggatggagaagaa
tgtatagtattaatgaatgaatgatgtaagatgagaaacaagaagaagca
atgaaggaagaatgaagaatgaggagatgggagcaattgaagaccaccta
gatgttggacctcggcctccaggtgcttacac
gaattccattcataggttccaggctgggggtgggggttgggtcgtcccac
catcattcacaagttcctggccagggattccattcataacctccaggcag
gggattgcattatatttttgaagggcatatccaggctattaccttaactt
tgaaatagtttggtatattgaacacaaagctgtatgccatgcattcgtga
ttttgagagactggacaaggatgtctccagacctcagtgtggaacacagc
cctgcctctggaatgggtaaccttggacctgtctctgagccctcttccag
aatagagaatgaaacagaaacctccccgatggtcactgtgagaaactaac
aaatgatgtcttaaagcacacagtgcagtgtgggagagataaatggctca
gcgcatttggctgctcttccagaggacctgggttcaattcctagtactgg
caatatggctcacaaccatgtacagcctagttccaagggatgtgacactc
tcttctgacctgtgggcaccaggcatgcacatagtatatacattttagat
aaacatgcagggaaaaacactcaaacacaaaatgaaaacagttttaaaga
ttcctctgtgtgtgtgtatgtgtgttgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_169862781_169863880
seq2: B6Ng01-145N12.b_50_1131

seq1  GAATTCAATTATTTTTATTCTTCAAAGCTAATTTAAAATTTAAGGGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTATTTTTATTCTTCAAAGCTAATTTAAAATTTAAGGGATGC  50

seq1  CATTACATGAAATAATAGGGAAGAAATGTAATCGCAATCTCTGGGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATGAAATAATAGGGAAGAAATGTAATCGCAATCTCTGGGAACAG  100

seq1  TTGGTCGTCCTTAGAATTTAAAAAAAAAAAAATGTGATCGCTGACGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCGTCCTTAGAATTTAAAAAAAAAAAAATGTGATCGCTGACGATTT  150

seq1  GGAAATGTTTCTTCATCTGTGAACAGATGAGGGATTGAAGTCTCTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTTTCTTCATCTGTGAACAGATGAGGGATTGAAGTCTCTGCTCT  200

seq1  TTTCAGTATATTTAATTTAAACGGAGAAGAGAGTTGACGGTGGCGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTATATTTAATTTAAACGGAGAAGAGAGTTGACGGTGGCGGACTC  250

seq1  CCCGTGCTGGGAGATCATTGGGCATAATTGCCAAGGCAGCTGAGGGGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCTGGGAGATCATTGGGCATAATTGCCAAGGCAGCTGAGGGGGGC  300

seq1  GGGGCAGCCTGGGAGACTCACGTGGCGTTCTCCTTGATGGGAACCAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCCTGGGAGACTCACGTGGCGTTCTCCTTGATGGGAACCAAGTC  350

seq1  TTCCTGAAATGCCAGGGCTTCTTGAATTTGCCATCTTGTTCCTCACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAATGCCAGGGCTTCTTGAATTTGCCATCTTGTTCCTCACACAG  400

seq1  ACTGTTAGAGGTTTCACTGTCCCCTTCTCTTGTAGGCAGTGCGGTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAGAGGTTTCACTGTCCCCTTCTCTTGTAGGCAGTGCGGTTTCTT  450

seq1  CCTTCTTTCACGCACTCATTCATTCACTCACTCAAGCATTCATTCATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTCACGCACTCATTCATTCACTCACTCAAGCATTCATTCATGGT  500

seq1  GAAGTAACCGTCCCAGACTCCCCGCCACAGCAGCGGGAGTGACAGACCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACCGTCCCAGACTCCCCGCCACAGCAGCGGGAGTGACAGACCCG  550

seq1  TCACAGCCCTCAGCCACGCAGTTGGAGGAATTCTCAAACCTGGATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCCCTCAGCCACGCAGTTGGAGGAATTCTCAAACCTGGATCTGTA  600

seq1  AAAGTCACAGGGCGAGCTTTTAAAGAGTAAGGACTGGGACTTGGGCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACAGGGCGAGCTTTTAAAGAGTAAGGACTGGGACTTGGGCTCAG  650

seq1  TCAGCGCCCGCCTGTCATTCCAGCGCTGAAGACAGACACCTGAACTCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCCCGCCTGTCATTCCAGCGCTGAAGACAGACACCTGAACTCCCC  700

seq1  GGGGCCTGCCAACCAGCTAGTCCAGCCTAGTCAGGGAATCAAAGAGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTGCCAACCAGCTAGTCCAGCCTAGTCAGGGAATCAAAGAGAGAT  750

seq1  TAATAATTAATTAATTAAAAGCAAATAAGGTCAGAGCCAGGCTTGGTGGC  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATAATTAATTAATTAAAAGCAAATAAAGTCAGAGCCAGGCTTGGTGGC  800

seq1  CACGTGCCTTTCATCCCAGCGCTCGGGAGGCAG-AGACAGATAGATCTTT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACGTGCCTTTCATCCCAGCGCTCGGGAGGCAGAAGACAGATAGATCTTT  850

seq1  GTGAGTTTCAGGCCAGCCTGGTTTATGGAGTGAGGACTGCAGAGTAAGA-  898
      ||||||||||||||||| || |||||||||||||||||| ||||||||| 
seq2  GTGAGTTTCAGGCCAGCTTGTTTTATGGAGTGAGGACTGTAGAGTAAGAA  900

seq1  -CCCTTTCTTGAAAGAAAGAAAGGAAGGAAGGAAAAGAAGAAAGA-AAGA  946
       || |||||||||||||||||||||||| ||| || || ||  || ||||
seq2  CCCTTTTCTTGAAAGAAAGAAAGGAAGG-AGGGAAGGAGGATGGAGAAGA  949

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  996
      | |    | || |  || ||| ||| | | | ||||     |||||  ||
seq2  ATG---TATAGTATTAATGAATGAATG-ATGTAAGA---TGAGAAA-CAA  991

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGATTGG  1046
      |||   ||| ||  ||| ||||| | ||||| ||       | ||||  |
seq2  GAA--GAAGCAATGAAGGAAGAATG-AAGAATGA-------GGAGAT--G  1029

seq1  GAAGCAAGTGAGAGACAACCTAGATGTT-GACCTCTGGCCTCCATGTGCA  1095
      | ||||| ||| |||| ||||||||||| |||||| |||||||| |||| 
seq2  GGAGCAATTGA-AGACCACCTAGATGTTGGACCTC-GGCCTCCAGGTGCT  1077

seq1  TACAC  1100
      |||||
seq2  TACAC  1082

seq1: chr2_170056320_170056957
seq2: B6Ng01-145N12.g_68_706 (reverse)

seq1  CACACACACACACACACACACATACACACACACAGAGGAATCTTTAAAAC  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CACACACACACACA-ACACACATACACACACACAGAGGAATCTTTAAAAC  49

seq1  TGTTTTCATTTTGTGTTTGAGTG-TTTTCCCTGCATGTTTATCT-AAATG  98
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TGTTTTCATTTTGTGTTTGAGTGTTTTTCCCTGCATGTTTATCTAAAATG  99

seq1  TATATACTATGTGCATGCCTGGTGCCCACAGGTCAGAAGAGAGTGTCACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTATGTGCATGCCTGGTGCCCACAGGTCAGAAGAGAGTGTCACA  149

seq1  TCCCTTGGAACTAGGCTGTACATGGTTGTGAGCCATATTGCCAGTACTAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGAACTAGGCTGTACATGGTTGTGAGCCATATTGCCAGTACTAG  199

seq1  GAATTGAACCCAGGTCCTCTGGAAGAGCAGCCAAATGCGCTGAGCCATTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACCCAGGTCCTCTGGAAGAGCAGCCAAATGCGCTGAGCCATTT  249

seq1  ATCTCTCCCACACTGCACTGTGTGCTTTAAGACATCATTTGTTAGTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCCACACTGCACTGTGTGCTTTAAGACATCATTTGTTAGTTTCT  299

seq1  CACAGTGACCATCGGGGAGGTTTCTGTTTCATTCTCTATTCTGGAAGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGACCATCGGGGAGGTTTCTGTTTCATTCTCTATTCTGGAAGAGG  349

seq1  GCTCAGAGACAGGTCCAAGGTTACCCATTCCAGAGGCAGGGCTGTGTTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGACAGGTCCAAGGTTACCCATTCCAGAGGCAGGGCTGTGTTCC  399

seq1  ACACTGAGGTCTGGAGACATCCTTGTCCAGTCTCTCAAAATCACGAATGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGGTCTGGAGACATCCTTGTCCAGTCTCTCAAAATCACGAATGC  449

seq1  ATGGCATACAGCTTTGTGTTCAATATACCAAACTATTTCAAAGTTAAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATACAGCTTTGTGTTCAATATACCAAACTATTTCAAAGTTAAGGT  499

seq1  AATAGCCTGGATATGCCCTTCAAAAATATAATGCAATCCCCTGCCTGGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTGGATATGCCCTTCAAAAATATAATGCAATCCCCTGCCTGGAG  549

seq1  GTTATGAATGGAATCCCTGGCCAGGAACTTGTGAATGATGGTGGGACGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAATGGAATCCCTGGCCAGGAACTTGTGAATGATGGTGGGACGAC  599

seq1  CCAACCCCCACCCCCAGCCTGGAACCTATGAATGGAATTC  638
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCCCACCCCCAGCCTGGAACCTATGAATGGAATTC  639