BAC Information

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BAC

Clone NameB6Ng01-146C08
Chromosome2 (Build37)
Map Location 91,695,147 - 91,857,961
singlet/doubletdoublet
Overlap geneD030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1
Upstream geneMtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146C08.bB6Ng01-146C08.g
ACCDH943366DH943367
length1,111403
definitionDH943366|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C08, 5' end.DH943367|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,695,147 - 91,696,265)(91,857,554 - 91,857,961)
sequence
gaattccaagtaaatagaatgtagtctttctgcctgcttgggaatttaga
ttccgtatcccaaaacacttcactctagctcattactgcctcctccacag
cttcctgggcgagtctgaaggttgtaggatactgaaaagggcttatcttt
gttccttgttgcttattgcttctttccttgtgaaaaattctaaaaacaaa
aaccaattgcacgtgtagatgtctataacgagcgtttgaacacccacttg
ttagcaatgtgtcctgcttccctcaactagttgagattttttttttaatt
attattaccctcagtgaactgccatacctaccacctttctgggctctgct
aggtaggctaggctggcctggaattggtgatctgcttcctcggcctccca
agtactaagattataggtttgtatcattatacctttcttgaagcaacaga
ttaaataaataaatctcagttaaatttgaaatttataggactcccttaat
tagattttctcaattcacaaaaaggcatctcctatcatttatttgaatgg
ttgcaatccatcttttataacttaaaatgttagtaagatagtattttggt
ttttgttcatgtggttgtttggttatgtttttttactataaaagacgacc
aaaatatattaatttaatatatactacatgggtttaatttaaagaataga
aacaaaacaaaaatactactgctcatggaacagagttctttataaacata
aaggaaagaatgagtttaaggaagtgttgtaaagatggcttaaggagaag
ctggacagccacatggggaattttggctaaaagctgtttgaccttgagta
agcaaggacagctactgctgcttcctccttctcttctaaatacattcact
tgtgtttagtgtagttaggggacgagtatgggtcccagggattggactca
gggtcattaggcttggccttaatctccctgagctatctcaggctccttct
ccctttttaggagtttcttgcagtacttctaaaagcttgagacattttca
aagtttggcagcttggtggttgaacagctgttcatgtgggttctctaatg
gatgggaacag
ctcccaactgggtcctctccacctcctgcaatctctatactcgggacctt
cagagcatctatcagggacctggtttgcccttgaacctctctggagaaac
cagttccagatgttggagaacaggctgttcttctggaagtctcaccactc
caggggggcaggatggaggaggaagatttgggtggagttgagtgaagact
gtgagcattgctttggctggaagtctgtgtaaccccccttgagcagaccc
agggaagtcacagtcagtgacaggaccctaagccaggagcaggaaaaatg
tggaggttggaaagtctggctcataagctgggaggaatagaatatgaccc
agaaccttgaccctcaaagggagtgtgtcatggttattggttgtccctgc
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_91695147_91696265
seq2: B6Ng01-146C08.b_48_1158

seq1  GAATTCCAAGTAAATAGAATGTAGTCTTTCTGCCTGCTTGGGAATTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTAAATAGAATGTAGTCTTTCTGCCTGCTTGGGAATTTAGA  50

seq1  TTCCGTATCCCAAAACACTTCACTCTAGCTCATTACTGCCTCCTCCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTATCCCAAAACACTTCACTCTAGCTCATTACTGCCTCCTCCACAG  100

seq1  CTTCCTGGGCGAGTCTGAAGGTTGTAGGATACTGAAAAGGGCTTATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGGCGAGTCTGAAGGTTGTAGGATACTGAAAAGGGCTTATCTTT  150

seq1  GTTCCTTGTTGCTTATTGCTTCTTTCCTTGTGAAAAATTCTAAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGTTGCTTATTGCTTCTTTCCTTGTGAAAAATTCTAAAAACAAA  200

seq1  AACCAATTGCACGTGTAGATGTCTATAACGAGCGTTTGAACACCCACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTGCACGTGTAGATGTCTATAACGAGCGTTTGAACACCCACTTG  250

seq1  TTAGCAATGTGTCCTGCTTCCCTCAACTAGTTGAGATTTTTTTTTTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAATGTGTCCTGCTTCCCTCAACTAGTTGAGATTTTTTTTTTAATT  300

seq1  ATTATTACCCTCAGTGAACTGCCATACCTACCACCTTTCTGGGCTCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACCCTCAGTGAACTGCCATACCTACCACCTTTCTGGGCTCTGCT  350

seq1  AGGTAGGCTAGGCTGGCCTGGAATTGGTGATCTGCTTCCTCGGCCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGCTAGGCTGGCCTGGAATTGGTGATCTGCTTCCTCGGCCTCCCA  400

seq1  AGTACTAAGATTATAGGTTTGTATCATTATACCTTTCTTGAAGCAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAAGATTATAGGTTTGTATCATTATACCTTTCTTGAAGCAACAGA  450

seq1  TTAAATAAATAAATCTCAGTTAAATTTGAAATTTATAGGACTCCCTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATAAATCTCAGTTAAATTTGAAATTTATAGGACTCCCTTAAT  500

seq1  TAGATTTTCTCAATTCACAAAAAGGCATCTCCTATCATTTATTTGAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTCTCAATTCACAAAAAGGCATCTCCTATCATTTATTTGAATGG  550

seq1  TTGCAATCCATCTTTTATAACTTAAAATGTTAGTAAGATAGTATTTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATCCATCTTTTATAACTTAAAATGTTAGTAAGATAGTATTTTGGT  600

seq1  TTTTGTTCATGTGGTTGTTTGGTTATGTTTTTTTACTATAAAAGACGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCATGTGGTTGTTTGGTTATGTTTTTTTACTATAAAAGACGACC  650

seq1  AAAATATATTAATTTAATATATACTACATGGGTTTAATTTAAAGAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATTAATTTAATATATACTACATGGGTTTAATTTAAAGAATAGA  700

seq1  AACAAAACAAAAATACTACTGCTCATGGAACAGAGTTCTTTATAAACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAAATACTACTGCTCATGGAACAGAGTTCTTTATAAACATA  750

seq1  AAGGAAAGAATGAGTTTAAGGAAGTGTTGTAAAGATGGCTTAAGGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGAATGAGTTTAAGGAAGTGTTGTAAAGATGGCTTAAGGAGAAG  800

seq1  CTGGACAGCCACATGGGGAATTTTGGCTAAAAGCTGTTTGACCTTGAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGCCACATGGGGAATTTTGGCTAAAAGCTGTTTGACCTTGAGTA  850

seq1  AGCAAGGACAGCTACTGCTGCTTCCTCCTTCTCTTCTAAATACATTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGACAGCTACTGCTGCTTCCTCCTTCTCTTCTAAATACATTCACT  900

seq1  TGTGTTTAGTGTAGTTA-GGGACGAGTATGGGTCCCAGGGATTGAACTCA  949
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  TGTGTTTAGTGTAGTTAGGGGACGAGTATGGGTCCCAGGGATTGGACTCA  950

seq1  GGGTCATTAGGCTTGGCCTCTAATCTCCCTGAGCTATCTCAGGGCTCCCT  999
      ||||||||||||||||||| ||||||||||||||||||||| |||| |||
seq2  GGGTCATTAGGCTTGGCCT-TAATCTCCCTGAGCTATCTCA-GGCT-CCT  997

seq1  TCTCCCTTTTTAGGAGGTTTCTTGCAAGTACTTCTTAAAAGCTTGAGACT  1049
      ||||||||||||||| ||||||||| |||||||| |||||||||||||| 
seq2  TCTCCCTTTTTAGGA-GTTTCTTGC-AGTACTTC-TAAAAGCTTGAGACA  1044

seq1  TTTCCAGAGTTTGGCAGCTT-GTGTTGAAACAGCTGTCAATGTTGGGTTC  1098
      ||| || ||||||||||||| ||| |  |||||||||  ||| |||||||
seq2  TTTTCAAAGTTTGGCAGCTTGGTGGTTGAACAGCTGTTCATG-TGGGTTC  1093

seq1  TTCTAACAGGATGGAGAACAG  1119
       |||||  |||||| ||||||
seq2  -TCTAA-TGGATGG-GAACAG  1111

seq1: chr2_91857554_91857961
seq2: B6Ng01-146C08.g_68_476 (reverse)

seq1  TTTGCAGGGA-AACCAATATCCATGACACACTCCCTTTGAGGGTCAAGGT  49
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TTTGCAGGGACAACCAATAACCATGACACACTCCCTTTGAGGGTCAAGGT  50

seq1  TCTGGGTCATATTCTATTCCTCCCAGCTTCTGAGCCAGACTTTCCAACCT  99
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGGGTCATATTCTATTCCTCCCAGCTTATGAGCCAGACTTTCCAACCT  100

seq1  CCACATTTTTCCTGCTCCTGGCTTAGGGTCCTGTCACTGACTGTGACTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTTCCTGCTCCTGGCTTAGGGTCCTGTCACTGACTGTGACTTC  150

seq1  CCTGGGTCTGCTCAAGGGGGGTTACACAGACTTCCAGCCAAAGCAATGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCTGCTCAAGGGGGGTTACACAGACTTCCAGCCAAAGCAATGCT  200

seq1  CACAGTCTTCACTCAACTCCACCCAAATCTTCCTCCTCCATCCTGCCCCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCTTCACTCAACTCCACCCAAATCTTCCTCCTCCATCCTGCCCCC  250

seq1  CTGGAGTGGTGAGACTTCCAGAAGAACAGCCTGTTCTCCAACATCTGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGGTGAGACTTCCAGAAGAACAGCCTGTTCTCCAACATCTGGAA  300

seq1  CTGGTTTCTCCAGAGAGGTTCAAGGGCAAACCAGGTCCCTGATAGATGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTCCAGAGAGGTTCAAGGGCAAACCAGGTCCCTGATAGATGCT  350

seq1  CTGAAGGTCCCGAGTATAGAGATTGCAGGAGGTGGAGAGGACCCAGTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTCCCGAGTATAGAGATTGCAGGAGGTGGAGAGGACCCAGTTGG  400

seq1  GAGGAATTC  408
      |||||||||
seq2  GAGGAATTC  409