BAC Information

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BAC

Clone NameB6Ng01-146D18
Chromosome2 (Build37)
Map Location 76,101,093 - 76,200,220
singlet/doubletdoublet
Overlap genePde11a, Cyct
Upstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1
Downstream geneDrbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146D18.bB6Ng01-146D18.g
ACCDH943432DH943433
length9591,106
definitionDH943432|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D18, 5' end.DH943433|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,101,093 - 76,102,053)(76,199,110 - 76,200,220)
sequence
gaattcctttatgtacaaactagggattttatgccacgtatgcagtgggg
aaatggaactactaactgacctgctggcatcgaacactggtggttatgca
ttggcaaggttcttcgttgttgttcatgaatgtccccacttccagaggga
atagctttctgattgacagggtgcatacgcactgactccctaaggagggc
tgctggtcctctgtgttctcagggcgtcaggacctctccatcagaattgc
cttccacctgaggcactggagtcctcttcaacattgaagctctcttgatc
cccccagccctattactgccaggaacacagggtggatttatgatgtccag
tctgagtgcagccagatattaccagcacattctaccattggggtaggggc
agtggacacacacactggctatagaatttaattcatacctgagtatgtcc
taccagatgcctcagaacctctaagcaacatgatgaagggaaaaagacct
gactgtgtgacattctcatccaacctaaaacagcacgacaccccacagtt
ttagcatttttaaaatcccagcatctaagcagggtctcagcacagccata
atgacagtggagcaaaggcagtcacgtgactcgcaatatggtagccttct
cagcaggaaagaaacctgaatcatcccaaccagatcactgctttgtcaat
tagaacatatttgtatcttggagttttcagcatctcagactctgcgattt
ctcctttaatgtcagaagagtgcgttaattatttctgccttttaaacagg
attgatgaatccaattttttattttcaaaatgttttagcagtcgatttat
agatgtatttcagtgtagataatttcctcagtcgatgaaaggccttggat
gcaaatgatcctgaggaccacaataaagaggccacagggaggggagagta
atgggggaa
gaattctaggtttctaggtttttctctagccttctccatatttctcctgc
aagccaattccaaaggtttgagaatcattttattagatttagtgatagca
ttaacattttttctctaggactcattttctgtatgagccagacatttcat
tactgtgataaaacgcctgacagaaaataaaggaggaaaggtgggttttg
ttttgttttttatggtttcagtttatggttcccagattccttgaattttc
taggcccgtggtgaggctgaacatcatggtaataagactatgtgaccact
catctcatgccagataggaagtaactatcaaatttcaaaattgcataatg
tctttgcacaagaactacatgtaactgaaatgtttggggggtccttgggg
gtcaggacttattagctttataacaataaatgttctgggaatctgcagat
tacattttatttttcaagactttgaaatatatacgctatagttatgtgtc
atacctgtcctttgacgctgtttatcctgacaaaagtttagaaaacttct
ttttctagaatgagagataaggagctgagaacacagctccattgagtagc
ctgatcagcagcttaagggcctcaggttcaatcccagtacttagaaggag
aaaaaaagacaccatgacagagcacagaagtaatagtgtgacttggtttt
gaaatgcaaagagaaaataataaatgttatctgtttcccaaactatctca
gactgttagtgcaatgaaatttactttagttgatatattagtcttcaaac
attacactaataaaaatatatactctatgaacgttttctaggtttttgtc
tctgatattattcatgacaagtgaaaatttttaggctgtcatatatgaat
gcggtccaaagcctccattagctctgtggtaagctatggcaaagggtagt
gtaaggtagccttagcttagcctgtggcacacacacagaatggatagttt
ccttcagtttgaaattatttgtccctgtccccctctcccgtagaaccctt
cgatccagtgagtgggcaccttaataatgtgttgacctgccagacaaaat
tcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_76101093_76102053
seq2: B6Ng01-146D18.b_42_1000

seq1  GAATTCCTTTATGTACAAACTAGGGATTTTATGCCACGTATGCAGTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTATGTACAAACTAGGGATTTTATGCCACGTATGCAGTGGGG  50

seq1  AAATGGAACTACTAACTGACCTGCTGGCATCGAACACTGGTGGTTATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAACTACTAACTGACCTGCTGGCATCGAACACTGGTGGTTATGCA  100

seq1  TTGGCAAGGTTCTTCGTTGTTGTTCATGAATGTCCCCACTTCCAGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAAGGTTCTTCGTTGTTGTTCATGAATGTCCCCACTTCCAGAGGGA  150

seq1  ATAGCTTTCTGATTGACAGGGTGCATACGCACTGACTCCCTAAGGAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTCTGATTGACAGGGTGCATACGCACTGACTCCCTAAGGAGGGC  200

seq1  TGCTGGTCCTCTGTGTTCTCAGGGCGTCAGGACCTCTCCATCAGAATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTCCTCTGTGTTCTCAGGGCGTCAGGACCTCTCCATCAGAATTGC  250

seq1  CTTCCACCTGAGGCACTGGAGTCCTCTTCAACATTGAAGCTCTCTTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACCTGAGGCACTGGAGTCCTCTTCAACATTGAAGCTCTCTTGATC  300

seq1  CCCCCAGCCCTATTACTGCCAGGAACACAGGGTGGATTTATGATGTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGCCCTATTACTGCCAGGAACACAGGGTGGATTTATGATGTCCAG  350

seq1  TCTGAGTGCAGCCAGATATTACCAGCACATTCTACCATTGGGGTAGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGCAGCCAGATATTACCAGCACATTCTACCATTGGGGTAGGGGC  400

seq1  AGTGGACACACACACTGGCTATAGAATTTAATTCATACCTGAGTATGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACACACACACTGGCTATAGAATTTAATTCATACCTGAGTATGTCC  450

seq1  TACCAGATGCCTCAGAACCTCTAAGCAACATGATGAAGGGAAAAAGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGATGCCTCAGAACCTCTAAGCAACATGATGAAGGGAAAAAGACCT  500

seq1  GACTGTGTGACATTCTCATCCAACCTAAAACAGCACGACACCCCACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTGACATTCTCATCCAACCTAAAACAGCACGACACCCCACAGTT  550

seq1  TTAGCATTTTTAAAATCCCAGCATCTAAGCAGGGTCTCAGCACAGCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTTTAAAATCCCAGCATCTAAGCAGGGTCTCAGCACAGCCATA  600

seq1  ATGACAGTGGAGCAAAGGCAGTCACGTGACTCGCAATATGGTAGCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGTGGAGCAAAGGCAGTCACGTGACTCGCAATATGGTAGCCTTCT  650

seq1  CAGCAGGAAAGAAACCTGAATCATCCCAACCAGATCACTGCTTTGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAAAGAAACCTGAATCATCCCAACCAGATCACTGCTTTGTCAAT  700

seq1  TAGAACATATTTGTATCTTGGAGTTTTCAGCATCTCAGACTCTGCGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATATTTGTATCTTGGAGTTTTCAGCATCTCAGACTCTGCGATTT  750

seq1  CTCCTTTAATGTCAGAAGAGTGCGTTCATTTATTTCTGCCTTTTAAACAG  800
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  CTCCTTTAATGTCAGAAGAGTGCGTT-AATTATTTCTGCCTTTTAAACAG  799

seq1  GATTGATGAATCCAATTTTTTATTTTCAAAATG-TTTAGCAGTCGATTTA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATTGATGAATCCAATTTTTTATTTTCAAAATGTTTTAGCAGTCGATTTA  849

seq1  TAGATGTA-TTCAGTGGTAGATAATTTCCTCAGTCTATGAAAGGCCTTGG  898
      |||||||| |||||| ||||||||||||||||||| ||||||||||||||
seq2  TAGATGTATTTCAGT-GTAGATAATTTCCTCAGTCGATGAAAGGCCTTGG  898

seq1  ATGCAAAAGGATCCTGAGGACCACAAAAAAGAGGCCACAGGGAGGGGAGG  948
      |||| ||| ||||||||||||||||| ||||||||||||||||||||| |
seq2  ATGC-AAATGATCCTGAGGACCACAATAAAGAGGCCACAGGGAGGGGA-G  946

seq1  AGTAAGGGGGGAA  961
      ||||| |||||||
seq2  AGTAATGGGGGAA  959

seq1: chr2_76199110_76200220
seq2: B6Ng01-146D18.g_64_1169 (reverse)

seq1  CTGTGAATTTTGTCTGACAGTCAAACACATATTAAAGATGCCATCTAACT  50
      |||||||||||||||| |||   |||||||  | ||| ||||  || |||
seq2  CTGTGAATTTTGTCTGGCAGGTCAACACATTATTAAGGTGCCCACTCACT  50

seq1  GGATCAAAGGGTCTTACGGGGGAGGGGGACCAGGAACAAAT-ATTTCAAA  99
      ||||| ||||||  |||||| |||||||| |||| |||||| ||||||||
seq2  GGATCGAAGGGTTCTACGGGAGAGGGGGA-CAGGGACAAATAATTTCAAA  99

seq1  CTGAAGGAAACTATCATTTCTTGTGTGTGTGCCACAGGCTAAGCTAAGGG  149
      |||||||||||||||  ||| |||||||||||||||||||||||||| ||
seq2  CTGAAGGAAACTATCCATTC-TGTGTGTGTGCCACAGGCTAAGCTAA-GG  147

seq1  CTTACCTACACTACCCTTTGCCATTAGCTTACCCACAGAGCTAATGGAGG  199
      ||  | ||||||||||||||||| ||||||| ||||||||||||||||||
seq2  CTACCTTACACTACCCTTTGCCA-TAGCTTA-CCACAGAGCTAATGGAGG  195

seq1  CTTTGGACCGCATTCATATATGACAGCCTAAAAATTTTCACTTGGTCATG  249
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTTGGACCGCATTCATATATGACAGCCTAAAAATTTTCACTT-GTCATG  244

seq1  AATAAATATCAGAGACAAAAACCTAGAAAACGTTCATAGAGTATATATTT  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAT-AATATCAGAGACAAAAACCTAGAAAACGTTCATAGAGTATATATTT  293

seq1  TTATTAGTGTAATGTTTGAAGACTAATATATCAACT-AAGTAAATTTCAT  348
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATTAGTGTAATGTTTGAAGACTAATATATCAACTAAAGTAAATTTCAT  343

seq1  TGCACTAACAGTCTGAGATAGTTTGGGAAACAGATAACATTTATTATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAACAGTCTGAGATAGTTTGGGAAACAGATAACATTTATTATTTT  393

seq1  CTCTTTGCATTTCAAAACCAAGTCACACTATTACTTCTGTGCTCTGTCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCATTTCAAAACCAAGTCACACTATTACTTCTGTGCTCTGTCAT  443

seq1  GGTGTCTTTTTTTCTCCTTCTAAGTACTGGGATTGAACCTGAGGCCCTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTTTTTTCTCCTTCTAAGTACTGGGATTGAACCTGAGGCCCTTA  493

seq1  AGCTGCTGATCAGGCTACTCAATGGAGCTGTGTTCTCAGCTCCTTATCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGATCAGGCTACTCAATGGAGCTGTGTTCTCAGCTCCTTATCTC  543

seq1  TCATTCTAGAAAAAGAAGTTTTCTAAACTTTTGTCAGGATAAACAGCGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAGAAAAAGAAGTTTTCTAAACTTTTGTCAGGATAAACAGCGTC  593

seq1  AAAGGACAGGTATGACACATAACTATAGCGTATATATTTCAAAGTCTTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAGGTATGACACATAACTATAGCGTATATATTTCAAAGTCTTGA  643

seq1  AAAATAAAATGTAATCTGCAGATTCCCAGAACATTTATTGTTATAAAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATGTAATCTGCAGATTCCCAGAACATTTATTGTTATAAAGCT  693

seq1  AATAAGTCCTGACCCCCAAGGACCCCCCAAACATTTCAGTTACATGTAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCCTGACCCCCAAGGACCCCCCAAACATTTCAGTTACATGTAGT  743

seq1  TCTTGTGCAAAGACATTATGCAATTTTGAAATTTGATAGTTACTTCCTAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCAAAGACATTATGCAATTTTGAAATTTGATAGTTACTTCCTAT  793

seq1  CTGGCATGAGATGAGTGGTCACATAGTCTTATTACCATGATGTTCAGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATGAGATGAGTGGTCACATAGTCTTATTACCATGATGTTCAGCCT  843

seq1  CACCACGGGCCTAGAAAATTCAAGGAATCTGGGAACCATAAACTGAAACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGGGCCTAGAAAATTCAAGGAATCTGGGAACCATAAACTGAAACC  893

seq1  ATAAAAAACAAAACAAAACCCACCTTTCCTCCTTTATTTTCTGTCAGGCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAACAAAACAAAACCCACCTTTCCTCCTTTATTTTCTGTCAGGCG  943

seq1  TTTTATCACAGTAATGAAATGTCTGGCTCATACAGAAAATGAGTCCTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCACAGTAATGAAATGTCTGGCTCATACAGAAAATGAGTCCTAGA  993

seq1  GAAAAAATGTTAATGCTATCACTAAATCTAATAAAATGATTCTCAAACCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGTTAATGCTATCACTAAATCTAATAAAATGATTCTCAAACCT  1043

seq1  TTGGAATTGGCTTGCAGGAGAAATATGGAGAAGGCTAGAGAAAAACCTAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTGGCTTGCAGGAGAAATATGGAGAAGGCTAGAGAAAAACCTAG  1093

seq1  AAACCTAGAATTC  1111
      |||||||||||||
seq2  AAACCTAGAATTC  1106