BAC Information

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BAC

Clone NameB6Ng01-146L20
Chromosome2 (Build37)
Map Location 99,282,142 - 99,369,671
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702, LOC100042907, LOC241572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146L20.bB6Ng01-146L20.g
ACCDH943801DH943802
length1,1531,080
definitionDH943801|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L20, 5' end.DH943802|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,368,609 - 99,369,671)(99,282,142 - 99,283,220)
sequence
gaattctttgttcagttctgagccccattttttaatggcgttatttgctt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcatttcttacacattcttg
ttccagctgccaaatatcatatgataaaatttcattatttttgtgattga
atatcatctcattgcctattacataaaataatatagtatataatttattg
ctaagttgctatatatcatttatatattttgtatatactgttgattcact
gatattatgattattcttacagtatgacagctggtttaagcacctaacat
attaactcaccatgatggaacttctatactctatatttgctgcaccaaaa
tatgttcctgtcaaaattgtggaaagtcattcagtattatctttatggaa
agtgtgtcctgattgaagtaagatgatgttattttttcatgattatttgt
attgactttgttttatttttaagaccatttgtgtatcttacttatatctt
gctcgcagagtctatgtccatttagaattggatattctacttttgctgtt
gaattgatgacatttttttaaattattattgatggttcagtctctgagac
tcccatggttcaagattagttgactctgttggtctgcctgttgggttcct
atccccttcatggcccacaatccttcttcctattttttcagaagtgtccc
caagtgccatccattgtttggctgtgagtatccatatttgtcagctgctg
tgtagagccttccagaggatagccctgctaggctcctgttctattaagca
taacagggtattattaatagtgtcacagttttgatgcttgcccatgggat
gagacttaagttgggccaaatatttgttggcgagtcattagtctctgctc
catcccctgtccctgaatttcttggtagaattgctgatatctttttcttt
ctttttttaattagatgttttcttttatttacaatttcaatgctattccg
aaggtttccctatacccttccccccgccgcggtgctctcccctctaaact
cagaacactattgcatattgcagcaagaatgctgtattctgaatgttctc
ttt
gaattccatctcattttcagggggctctgtgttttactgctaaaatccaa
agagtactggcttgtattggaagtgcctgaaaggaaaggcattaacttga
cttacttagattattttttccctgtggaatcatcctatctcctaggcaat
taagtagtccccacatgacaatcagggtacttgtataaactttatcacag
tagctaatatgtactgttatgagtgttatgagagtctttcaaagtgattt
aatgtgaggggagctaaaatgattgagttgaaatgttacttccttctgat
aggtttcattttattaaaatgtctttaaaagaaaaatcctctgagaggct
cattaagacctagctttaagtaaattgattgtgcatatttaattatttag
ttccctatagcattgtatctggagtaccaaatcaaaattattttgacaat
atgtccaaattttagcattcagtcaaaaaacttgctgttgaactaacagt
agtatttaaaggaagtctgtgtgctgagaataagtgactgttgcttgcaa
attcctaagcagaacatctttttgccccctctatgaaccaaacaacatta
tagaaaagggtataagaagaatgcaagagcaggatggtggaaagaagttc
tctgaaatgctgtcttctagaccacactgaaacattggagctgtgagcac
ccattggttcagataacatacataagactgggtctggaaccatttcatta
gaactgaaggagggacttgtgaggaccaacctcaatatgggtattagtag
tttttggaaaaaaagggctcttgttttctattagaatgtagccactgata
agttgggtatgctcatagatacaagtccctccctccctttcatactcatt
tcatacaagcacactacttttaaattattccatggggccacatacataaa
acatacctaataagaggggaagtctttttggaaaggcatgtttctgttgt
ggtgggagaggcatagaatgaaactcatgtagtgtttacttagagattct
gtcacttggtgttatttctagcataaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_99368609_99369671
seq2: B6Ng01-146L20.b_128_1195 (reverse)

seq1  AAAGAGAACAATCAAGATATCAGCAATTCTTGCTGGCATATGCAATAGTG  50
      |||||||||| |||  ||| |||| ||||||||||  |||||||||||||
seq2  AAAGAGAACATTCAGAATA-CAGC-ATTCTTGCTGCAATATGCAATAGTG  48

seq1  -TCTGGGTTTGGGGGGGGGAGCACGGCGGCGGGGGG-AGGGTATAGGG-A  97
       |||| |||| | |||| |||||| ||||||||||| ||||||||||| |
seq2  TTCTGAGTTTAGAGGGGAGAGCACCGCGGCGGGGGGAAGGGTATAGGGAA  98

seq1  ACTTTCGGAATAGCATTTGAAATGTAAAT-AAAGAAAACATCTAATTAAA  146
      || ||||||||||||||  || ||||||| ||||||||||||||||| ||
seq2  ACCTTCGGAATAGCATTGAAATTGTAAATAAAAGAAAACATCTAATT-AA  147

seq1  AAAAAGAAAGAAAAAGATATCAGCAATTCTA-CAAGAAATTCAGGGACAG  195
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAAAGAAAGAAAAAGATATCAGCAATTCTACCAAGAAATTCAGGGACAG  197

seq1  GGGATGGAGCAGAGACTAATGACTCGCCAACAAATATTTGGCCCAACTTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAGCAGAGACTAATGACTCGCCAACAAATATTTGGCCCAACTTA  247

seq1  AGTCTCATCCCATGGGCAAGCATC-AAACTGTGACACTATTAATAATACC  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTCTCATCCCATGGGCAAGCATCAAAACTGTGACACTATTAATAATACC  297

seq1  CTGTTATGCTT-ATAG-ACAGGAGCCTAGCAGGGCTATCCTCTGGAAGGC  342
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CTGTTATGCTTAATAGAACAGGAGCCTAGCAGGGCTATCCTCTGGAAGGC  347

seq1  TCTACACAGCAGCTGACAAATATGGATACTCACAGCCAAACAATGGATGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAGCAGCTGACAAATATGGATACTCACAGCCAAACAATGGATGG  397

seq1  CACTTGGGGACACTTCTGAAAAAATAGGAAGAAGGATTGTGGGCCATGAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGGACACTTCTGAAAAAATAGGAAGAAGGATTGTGGGCCATGAA  447

seq1  GGGGATAGGAACCCAACAGGCAGACCAACAGAGTCAACTAATCTTGAACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGGAACCCAACAGGCAGACCAACAGAGTCAACTAATCTTGAACC  497

seq1  ATGGGAGTCTCAGAGACTGAACCATCAATAATAATTTAAAAAAATGTCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGTCTCAGAGACTGAACCATCAATAATAATTTAAAAAAATGTCAT  547

seq1  CAATTCAACAGCAAAAGTAGAATATCCAATTCTAAATGGACATAGACTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAACAGCAAAAGTAGAATATCCAATTCTAAATGGACATAGACTCT  597

seq1  GCGAGCAAGATATAAGTAAGATACACAAATGGTCTTAAAAATAAAACAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCAAGATATAAGTAAGATACACAAATGGTCTTAAAAATAAAACAAA  647

seq1  GTCAATACAAATAATCATGAAAAAATAACATCATCTTACTTCAATCAGGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATACAAATAATCATGAAAAAATAACATCATCTTACTTCAATCAGGA  697

seq1  CACACTTTCCATAAAGATAATACTGAATGACTTTCCACAATTTTGACAGG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTCCATAAAGATAATACTGAATGACTTTCCACAATTTTGACAGG  747

seq1  AACATATTTTGGTGCAGCAAATATAGAGTATAGAAGTTCCATCATGGTGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTTTGGTGCAGCAAATATAGAGTATAGAAGTTCCATCATGGTGA  797

seq1  GTTAATATGTTAGGTGCTTAAACCAGCTGTCATACTGTAAGAATAATCAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATGTTAGGTGCTTAAACCAGCTGTCATACTGTAAGAATAATCAT  847

seq1  AATATCAGTGAATCAACAGTATATACAAAATATATAAATGATATATAGCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGTGAATCAACAGTATATACAAAATATATAAATGATATATAGCA  897

seq1  ACTTAGCAATAAATTATATACTATATTATTTTATGTAATAGGCAATGAGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAATAAATTATATACTATATTATTTTATGTAATAGGCAATGAGA  947

seq1  TGATATTCAATCACAAAAATAATGAAATTTTATCATATGATATTTGGCAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCAATCACAAAAATAATGAAATTTTATCATATGATATTTGGCAG  997

seq1  CTGGAACAAGAATGTGTAAGAAATGAAAGGATCTTTACCTATCCTAAATC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAAGAATGTGTAAGAAATGAAAGGATCTTTACCTATCCTAAATC  1047

seq1  AGATAGGGGACTAATATCCAA  1063
      |||||||||||||||||||||
seq2  AGATAGGGGACTAATATCCAA  1068

seq1: chr2_99282142_99283220
seq2: B6Ng01-146L20.g_69_1148

seq1  GAATTCCATCTCATTTTCAGGGGGCTCTGTGTTTTACTGCTAAAATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCATTTTCAGGGGGCTCTGTGTTTTACTGCTAAAATCCAA  50

seq1  AGAGTACTGGCTTGTATTGGAAGTGCCTGAAAGGAAAGGCATTAACTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTGGCTTGTATTGGAAGTGCCTGAAAGGAAAGGCATTAACTTGA  100

seq1  CTTACTTAGATTATTTTTTCCCTGTGGAATCATCCTATCTCCTAGGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTAGATTATTTTTTCCCTGTGGAATCATCCTATCTCCTAGGCAAT  150

seq1  TAAGTAGTCCCCACATGACAATCAGGGTACTTGTATAAACTTTATCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGTCCCCACATGACAATCAGGGTACTTGTATAAACTTTATCACAG  200

seq1  TAGCTAATATGTACTGTTATGAGTGTTATGAGAGTCTTTCAAAGTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAATATGTACTGTTATGAGTGTTATGAGAGTCTTTCAAAGTGATTT  250

seq1  AATGTGAGGGGAGCTAAAATGATTGAGTTGAAATGTTACTTCCTTCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGGGGAGCTAAAATGATTGAGTTGAAATGTTACTTCCTTCTGAT  300

seq1  AGGTTTCATTTTATTAAAATGTCTTTAAAAGAAAAATCCTCTGAGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCATTTTATTAAAATGTCTTTAAAAGAAAAATCCTCTGAGAGGCT  350

seq1  CATTAAGACCTAGCTTTAAGTAAATTGATTGTGCATATTTAATTATTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGACCTAGCTTTAAGTAAATTGATTGTGCATATTTAATTATTTAG  400

seq1  TTCCCTATAGCATTGTATCTGGAGTACCAAATCAAAATTATTTTGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATAGCATTGTATCTGGAGTACCAAATCAAAATTATTTTGACAAT  450

seq1  ATGTCCAAATTTTAGCATTCAGTCAAAAAACTTGCTGTTGAACTAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAAATTTTAGCATTCAGTCAAAAAACTTGCTGTTGAACTAACAGT  500

seq1  AGTATTTAAAGGAAGTCTGTGTGCTGAGAATAAGTGACTGTTGCTTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAAAGGAAGTCTGTGTGCTGAGAATAAGTGACTGTTGCTTGCAA  550

seq1  ATTCCTAAGCAGAACATCTTTTTGCCCCCTCTATGAACCAAACAACATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAGCAGAACATCTTTTTGCCCCCTCTATGAACCAAACAACATTA  600

seq1  TAGAAAAGGGTATAAGAAGAATGCAAGAGCAGGATGGTGGAAAGAAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGGGTATAAGAAGAATGCAAGAGCAGGATGGTGGAAAGAAGTTC  650

seq1  TCTGAAATGCTGTCTTCTAGACCACACTGAAACATTGGAGCTGTGAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATGCTGTCTTCTAGACCACACTGAAACATTGGAGCTGTGAGCAC  700

seq1  CCATTGGTTCAGATAACATACATAAGACTGGGTCTGGAACCATTTCATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGTTCAGATAACATACATAAGACTGGGTCTGGAACCATTTCATTA  750

seq1  GAACTGAAGGAGGGACTTGTGAGGACCAACCTCAATATGGGTATTAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGGAGGGACTTGTGAGGACCAACCTCAATATGGGTATTAGTAG  800

seq1  TTTTTGGAAAAAAAGGGCTCTTGTTTTCTATTAGAATGTAGCCACTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAAAAAAAGGGCTCTTGTTTTCTATTAGAATGTAGCCACTGATA  850

seq1  AGTTGGGTATGCTCATAGATACAAGTCCCTCCCTCCCTTTCATACTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTATGCTCATAGATACAAGTCCCTCCCTCCCTTTCATACTCATT  900

seq1  TCATACAAGCACACTACTTTTAAATTATTCCATGGGGCCCACATACATAA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCATACAAGCACACTACTTTTAAATTATTCCATGGGG-CCACATACATAA  949

seq1  AACATACCTAATAAGAGGGGAAGTCTTTTTGGAAAGGCATGTTTCTGTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACCTAATAAGAGGGGAAGTCTTTTTGGAAAGGCATGTTTCTGTTG  999

seq1  TGGTGGGAGAGGCATAAGAATGAAAACTCATGTAGTGTTTACTTTAGAGA  1050
      ||||||||||||||| |||||| ||||||||||||||||||| |||||||
seq2  TGGTGGGAGAGGCAT-AGAATG-AAACTCATGTAGTGTTTAC-TTAGAGA  1046

seq1  TTCTGGCACTTTGTGTTTATTC-----TAAACCA  1079
      ||||| ||||| |||||  |||     |||||||
seq2  TTCTGTCACTTGGTGTTATTTCTAGCATAAACCA  1080