BAC Information

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BAC

Clone NameB6Ng01-147C04
Chromosome2 (Build37)5 (Build37)
Map Location 101,708,208 - 101,708,51069,736,632 - 69,737,755
singlet/doubletsingletsinglet
Overlap geneLOC100043302
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik
Downstream geneCommd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147C04.bB6Ng01-147C04.g
ACCDH944097DH944098
length9681,118
definitionDH944097|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C04, 5' end.DH944098|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(101,708,208 - 101,708,510)(69,736,632 - 69,737,755)
sequence
gaattctctaggagaactgctggtccccaaaacaaggagtttagagatgc
tatttctgcaatcactgatgaaactgcagtaacagcagaaatagggcaaa
tcaacttagcaccaagaagaaaaaacaagtgagcaaagacaagatgacac
ttcttataatttaccctttatatctggacttctctcagaagagactaccc
acatttggggtggatcttcccatattaatcaaggcaattggaacagttct
tctgacaaattgacattataatcaatcatagtatatatgcatgtataaac
acagataacatacaacgtacatagacagacagacagacacgcacacacac
acacacacacgcacacacacacgctgaagatagcactgttaaagaatgaa
gggaaggtcagatttagagaggcaggcccccagaagcacttttactgaca
tcatgggtataagtgaagaccttgctatgtcttacagtgaaatgtattac
ttccaagtttgcatgatggttctctaattttcagtgtgtctgaatttgga
gacagagttgttaagaaggaagtaaatttaaatgagatcataagagttgt
tggggaccctgacacaataggcatgatgtgctttttttgttttgtttttg
ttttttgtttttgttgttgtttttggttttttgtttgttttgagacagga
tttctctgtatagccctggctgtcctggatctcactttgtagaccaggct
ggcctcgaactcagaaatctgcctgcctctgcctcctgagtgctgggatt
aaaggtgtgcgccaccacacctggctatgtacttttaaagagaagactca
ggaacatttccccctccccctccctttgtctctttcacactctgtcccac
aatttgtctatattagtctagattctgtaaaaaatccacactggtcagat
ttactagattggttcaca
gaattcaggaggcacagaagtaaaagtatccataggacatctggcctaca
ggtagaatttcaggcaagctgggtgttgctgctgttgttgtttttaaaac
tctgccttaaacaaatagttgggaaggggacaaaaaaataatataagcat
taaatgatctgtgttcctcttataaacctttataatagtggcaactgaat
aacacccattatgttggggtgagaaagaaagccagggcaggaactatgtt
gtgatgcagcctcctgcagtgtaagaagtaaaggatttttctgccatagc
aaaagaagaggactcacctctccagcagtggagctgagaatgagaaggga
aagaaaccacacactcagcgatttctactccatcttgagaattctggaag
ccaagcaaaactcaagtgtattcccaaatcctagatatcagttttgagac
tatcaataattccaccagaaaataaaccttttaaaatgagatataaagta
aatacaggctacttatgcccaaggcacattttatataatatattatttct
aattaaacatcttaataaggtcatatctatagtcaatttacaaaagaaat
tctatagatccaaagttagggtgaacttaaatacctgtcaaaattatgga
agtttgtatagattatgatttgttgtagctacacctttaatatattccat
ggcatctaaaatgtgatcttctggcattttgaaataacatcatttgcaag
ctattttcaaatcagcatatttaatgtacatattctggttttggaaatgg
gatgtcatcaatcttgggacatttttgagtgactgagaagatacttagca
aaaaggtctagaatttcatcttccttaactctgtgcatccttttaaaatg
gctcaagtttcccaaagcccatgggagaaaaaatcaacatattgcccgca
ctctaagaacattgtgggtaccaattttcgctacatagacaaaagaaatg
attttatccctgaatggacttctaagctcttccaaaaacttcaacaaaag
cataaatgctagtgaaggtgctgcatgtaaatttaacaaactgtgataca
tttaaaacagtcttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101708208_101708510
seq2: B6Ng01-147C04.b_385_871 (reverse)

seq1  AGCCAGGCATGGTGGCGCACGCCTTTAATCCCAGCACTTAGGAGGCAGAG  50
      |||||||  ||||||||||| ||||||||||||||||| |||||||||||
seq2  AGCCAGGTGTGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAG  50

seq1  GCAGGCAGATTTCTAAGTTCGAGGCCAGCCTGGTCTACAGAATGAGTTCT  100
      |||||||||||||| |||||||||||||||||||||||| | |||| || 
seq2  GCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGATCC  100

seq1  AGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAA-AAACAAAAA-  148
      |||||||||||||||||||||||||| |||||||||||| ||||||||| 
seq2  AGGACAGCCAGGGCTATACAGAGAAATCCTGTCTCAAAACAAACAAAAAA  150

seq1  -CAAAAACAA-AACAAAAAGACTGTAGAA----ATAACAATATAAGGATA  192
       ||||||||| |||||||| |    | ||    | ||||| | ||| | |
seq2  CCAAAAACAACAACAAAAACAAAAAACAAAAACAAAACAAAAAAAGCACA  200

seq1  GCTGAGTTGTTGGGT----GT----------------------AGTTGAA  216
       |     | ||| ||    ||                      | || ||
seq2  TCATGCCTATTGTGTCAGGGTCCCCAACAACTCTTATGATCTCATTTAAA  250

seq1  T-------CTTCTCA-----------TCCTTAT---------------AT  233
      |       ||||| |           |||  ||               ||
seq2  TTTACTTCCTTCTTAACAACTCTGTCTCCAAATTCAGACACACTGAAAAT  300

seq1  T---GAGCC------------------TAAT-------------------  243
      |   || ||                  ||||                   
seq2  TAGAGAACCATCATGCAAACTTGGAAGTAATACATTTCACTGTAAGACAT  350

seq1  -----GGTATACACGTGT-------------------GTGCATGTGTGTG  269
           ||| | ||| | |                   |||| | || | |
seq2  AGCAAGGTCTTCACTTATACCCATGATGTCAGTAAAAGTGCTTCTGGGGG  400

seq1  C--GCGT-------------------------------------------  274
      |  || |                                           
seq2  CCTGCCTCTCTAAATCTGACCTTCCCTTCATTCTTTAACAGTGCTATCTT  450

seq1  --GCGTGTGTGTGCGCATGTGTGTGTGTGCG------  303
        ||||||||||| || |||||||||||| |      
seq2  CAGCGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGCG  487

seq1: chr5_69736632_69737755
seq2: B6Ng01-147C04.g_69_1186

seq1  GAATTCAGGAGGCACAGAAGTAAAAGTATCCATAGGACATCTGGCCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGCACAGAAGTAAAAGTATCCATAGGACATCTGGCCTACA  50

seq1  GGTAGAATTTCAGGCAAGCTGGGTGTTGCTGCTGTTGTTGTTTTTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATTTCAGGCAAGCTGGGTGTTGCTGCTGTTGTTGTTTTTAAAAC  100

seq1  TCTGCCTTAAACAAATAGTTGGGAAGGGGACAAAAAAATAATATAAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTAAACAAATAGTTGGGAAGGGGACAAAAAAATAATATAAGCAT  150

seq1  TAAATGATCTGTGTTCCTCTTATAAACCTTTATAATAGTGGCAACTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATCTGTGTTCCTCTTATAAACCTTTATAATAGTGGCAACTGAAT  200

seq1  AACACCCATTATGTTGGGGTGAGAAAGAAAGCCAGGGCAGGAACTATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCATTATGTTGGGGTGAGAAAGAAAGCCAGGGCAGGAACTATGTT  250

seq1  GTGATGCAGCCTCCTGCAGTGTAAGAAGTAAAGGATTTTTCTGCCATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCAGCCTCCTGCAGTGTAAGAAGTAAAGGATTTTTCTGCCATAGC  300

seq1  AAAAGAAGAGGACTCACCTCTCCAGCAGTGGAGCTGAGAATGAGAAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGGACTCACCTCTCCAGCAGTGGAGCTGAGAATGAGAAGGGA  350

seq1  AAGAAACCACACACTCAGCGATTTCTACTCCATCTTGAGAATTCTGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCACACACTCAGCGATTTCTACTCCATCTTGAGAATTCTGGAAG  400

seq1  CCAAGCAAAACTCAAGTGTATTCCCAAATCCTAGATATCAGTTTTGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAAAACTCAAGTGTATTCCCAAATCCTAGATATCAGTTTTGAGAC  450

seq1  TATCAATAATTCCACCAGAAAATAAACCTTTTAAAATGAGATATAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATAATTCCACCAGAAAATAAACCTTTTAAAATGAGATATAAAGTA  500

seq1  AATACAGGCTACTTATGCCCAAGGCACATTTTATATAATATATTATTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGGCTACTTATGCCCAAGGCACATTTTATATAATATATTATTTCT  550

seq1  AATTAAACATCTTAATAAGGTCATATCTATAGTCAATTTACAAAAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACATCTTAATAAGGTCATATCTATAGTCAATTTACAAAAGAAAT  600

seq1  TCTATAGATCCAAAGTTAGGGTGAACTTAAATACCTGTCAAAATTATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGATCCAAAGTTAGGGTGAACTTAAATACCTGTCAAAATTATGGA  650

seq1  AGTTTGTATAGATTATGATTTGTTGTAGCTACACCTTTAATATATTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTATAGATTATGATTTGTTGTAGCTACACCTTTAATATATTCCAT  700

seq1  GGCATCTAAAATGTGATCTTCTGGCATTTTGAAATAACATCATTTGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTAAAATGTGATCTTCTGGCATTTTGAAATAACATCATTTGCAAG  750

seq1  CTATTTTCAAATCAGCATATTTAATGTACATATTCTGGTTTTGGAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCAAATCAGCATATTTAATGTACATATTCTGGTTTTGGAAATGG  800

seq1  GATGTCATCAATCTT-GGACATTTTTGAGTGACTGAGAAGATACTTAGCA  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATGTCATCAATCTTGGGACATTTTTGAGTGACTGAGAAGATACTTAGCA  850

seq1  AAAAGGTCTAGAATTTCATCTTCCTTAACTCTGTGCATCCTTTTAAAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCTAGAATTTCATCTTCCTTAACTCTGTGCATCCTTTTAAAATG  900

seq1  GCTCAGGTTTCCCAAAGCCCATGGGAG-AAAAATCAACATATTGCCCGCA  948
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTCAAGTTTCCCAAAGCCCATGGGAGAAAAAATCAACATATTGCCCGCA  950

seq1  CTCTAAGAACATTGTGGGTACCAATTTTCGCTACATAGGACAAAAGAAAT  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTAAGAACATTGTGGGTACCAATTTTCGCTACATA-GACAAAAGAAAT  999

seq1  GATTTTTATCCCTGAATGGAC-TCTAAGCTCCTTCAAATAACTTCAACCA  1047
      || |||||||||||||||||| |||||||| |||| || ||||||||| |
seq2  GA-TTTTATCCCTGAATGGACTTCTAAGCT-CTTCCAAAAACTTCAACAA  1047

seq1  GAGCATAAATGCTAGTGAGGTTGGTTGCATGTAAATTTAACAAACCCTGT  1097
       ||||||||||||||||| | | | |||||||||||||||||||  ||||
seq2  AAGCATAAATGCTAGTGAAGGT-GCTGCATGTAAATTTAACAAA--CTGT  1094

seq1  GATACAATTTAAAAACAGTCCCTCATT  1124
      ||||||  || |||||||| | |||||
seq2  GATACA--TTTAAAACAGT-CTTCATT  1118