BAC Information

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BAC

Clone NameB6Ng01-147E13
Chromosome2 (Build37)
Map Location 179,737,655 - 179,875,113
singlet/doubletdoublet
Overlap geneLsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470
Upstream geneLOC665264, LOC100043168, LOC100039413, Cdh4, Taf4a
Downstream geneAdrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147E13.bB6Ng01-147E13.g
ACCDH944207DH944208
length9941,024
definitionDH944207|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E13, 5' end.DH944208|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,737,655 - 179,738,651)(179,874,080 - 179,875,113)
sequence
gaattcttcaacggaagctgtgtgaaaatgtaaaaaaatgcattgggttt
tctttttttgtttgttttgtttttcaagactgggcttctctgtgtagccc
cagctgtcctggaacctgctataaagaccatggcggcctggaactcagag
atctgcctgcctctctgcctcctgagtactggaattaaaggtatggccaa
cattttctggacagacatatctcttgggtgtgcttgcttgcttaagcatg
gctgtacacccttctgcagaataaaacttggctaaccaaatactttggat
tgtgtggtcattttcttgagaccccagagccatttcttagagctgtgtct
agttgacagtgaacgctaactagggcatctccctccaagagctgtgtctg
acccataactaaagatagcaaccagaatcaatcatagggttcttcagaat
aaacagggggcctagcattaggggtgcaatctgagcaaccatttcttcat
tgcatagatgtcatcagatgcataggatagctatatctctaatctataga
gctatagataaagaaagatagatattggcatattttgttcccagacattg
ggctaacccatgataccaagacatgtcacatatatggatacatgaggtta
ctgcttatattattccaccacaagctatttacagtatttagttttataag
tagaaaggatgcatgctagtggtaaaatgtacagtataataaattcataa
accaataaccagtgtttattatcattatcaaagcctatgtacagtaccaa
attacatgtgtttttatagccaatgtaaaaggtctgtctaatccaccaga
aacatgtgaaggatggcattgtcctctggtggttatgatgtcactgggct
gcaggggttttcttttttttttttttttttaagtttatttatttattata
tgtaagtacactgtagctgtcttcagacactccaaagaggcatc
gaattcccaaggacaattctctgaagtagaaccggagagccctgattggg
cattgtgatcctgggagtaatagctggggtcttgtcaagtaagacctcaa
aaaaggctcactgagtcaagacaaggaggagaaaagctctgaaacaaaat
ggaaaaggaaagaaatctaatgtttactgagcactgtgtaccagggctgc
caaaagtagctggaatgctgtggacatggcaaactgtgagagccacagaa
atggagatatagctccataaagggtcagggtcaggccccaaggatccacc
ctgtgctagtttttgtcaacttgacaaaatctaggattatctgggaagag
ggacctcagtagagaaaaaacacctctatctgattgctactaggcaagtc
tacaaggcattttcttgaataatggacgtggaagggccaagctcactgtg
aagcagaaggcagcagcactcctttgcaaatggtcctgggttacgtaaga
aagcaaactgaggggttggggatttagctcagtggtagagtgcttgccta
gctgggtgtgggcctcagctcaggaaaaaaaaaaaaaagaagcaaactga
acaagtcaagggagcaaaacagttaaaaagcactcctccatggtctcgac
ttcagttcctgccatggcttctttgatgatggactgtaacctgcaagcga
aagaaacccttttatacccaagcacatgaatatgtttggtcttggctgtg
atgtttatcacagcagtaggaactaactaatacccaactgaagatgggaa
gaatcaacaagagaaaagacatgcaggaggatggcaaggctccaggctga
gacagcagtatggaggaacttcggtatacacagtctagatgcagactcaa
gacagaggctccaggggaggcagagccagtaaagtgaatgaagacagcct
gagtacagggtaaggaaatgtgagccctcacttaaagtgacaatggagcc
tactccaactgcttgggacaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_179737655_179738651
seq2: B6Ng01-147E13.b_45_1038

seq1  GAATTCTTCAACGGAAGCTGTGTGAAAATGTAAAAAAATGCATTGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAACGGAAGCTGTGTGAAAATGTAAAAAAATGCATTGGGTTT  50

seq1  TCTTTTTTTGTTTGTTTTGTTTTTCAAGACTGGGCTTCTCTGTGTAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTGTTTGTTTTGTTTTTCAAGACTGGGCTTCTCTGTGTAGCCC  100

seq1  CAGCTGTCCTGGAACCTGCTATAAAGACCATGGCGGCCTGGAACTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCCTGGAACCTGCTATAAAGACCATGGCGGCCTGGAACTCAGAG  150

seq1  ATCTGCCTGCCTCTCTGCCTCCTGAGTACTGGAATTAAAGGTATGGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTCTGCCTCCTGAGTACTGGAATTAAAGGTATGGCCAA  200

seq1  CATTTTCTGGACAGACATATCTCTTGGGTGTGCTTGCTTGCTTAAGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGGACAGACATATCTCTTGGGTGTGCTTGCTTGCTTAAGCATG  250

seq1  GCTGTACACCCTTCTGCAGAATAAAACTTGGCTAACCAAATACTTTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACACCCTTCTGCAGAATAAAACTTGGCTAACCAAATACTTTGGAT  300

seq1  TGTGTGGTCATTTTCTTGAGACCCCAGAGCCATTTCTTAGAGCTGTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTCATTTTCTTGAGACCCCAGAGCCATTTCTTAGAGCTGTGTCT  350

seq1  AGTTGACAGTGAACGCTAACTAGGGCATCTCCCTCCAAGAGCTGTGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACAGTGAACGCTAACTAGGGCATCTCCCTCCAAGAGCTGTGTCTG  400

seq1  ACCCATAACTAAAGATAGCAACCAGAATCAATCATAGGGTTCTTCAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAACTAAAGATAGCAACCAGAATCAATCATAGGGTTCTTCAGAAT  450

seq1  AAACAGGGGGCCTAGCATTAGGGGTGCAATCTGAGCAACCATTTCTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGGGGCCTAGCATTAGGGGTGCAATCTGAGCAACCATTTCTTCAT  500

seq1  TGCATAGATGTCATCAGATGCATAGGATAGCTATATCTCTAATCTATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGATGTCATCAGATGCATAGGATAGCTATATCTCTAATCTATAGA  550

seq1  GCTATAGATAAAGAAAGATAGATATTGGCATATTTTGTTCCCAGACATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGATAAAGAAAGATAGATATTGGCATATTTTGTTCCCAGACATTG  600

seq1  GGCTAACCCATGATACCAAGACATGTCACATATATGGATACATGAGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACCCATGATACCAAGACATGTCACATATATGGATACATGAGGTTA  650

seq1  CTGCTTATATTATTCCACCACAAGCTATTTACAGTATTTAGTTTTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTATATTATTCCACCACAAGCTATTTACAGTATTTAGTTTTATAAG  700

seq1  TAGAAAGGATGCATGCTAGTGGTAAAATGTACAGTATAATAAATTCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGATGCATGCTAGTGGTAAAATGTACAGTATAATAAATTCATAA  750

seq1  ACCAATAACCAGTGTTTATTATCATTATCAAAGCCTATGTACAGTACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAACCAGTGTTTATTATCATTATCAAAGCCTATGTACAGTACCAA  800

seq1  ATTACATGTGTTTTTATAGCCAATGTAAAAGGTCTGTCTAATCCACCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTGTTTTTATAGCCAATGTAAAAGGTCTGTCTAATCCACCAGA  850

seq1  AACATGTGAAGGATGGCATTGTCCTCTGGTGGTTATGATGTCACTGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTGAAGGATGGCATTGTCCTCTGGTGGTTATGATGTCACTGGGCT  900

seq1  GCAGGGGTTTTCTTTTTTTTTTTTTTTTTTAAGATTTATTTATTTATTAT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGGGGTTTTCTTTTTTTTTTTTTTTTTTAAG-TTTATTTATTTATTAT  949

seq1  ATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATC  997
      ||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  ATGTAAGTACACTGTAGCTGTCTTCAGACACTCCA-AAGA-GGCATC  994

seq1: chr2_179874080_179875113
seq2: B6Ng01-147E13.g_70_1093 (reverse)

seq1  CCCCTGTCCCAAGCAGCTCTGAGTAGTGCTCCATTTGTCACTTCTGAAGT  50
      | |||||||||||||| |  |||||| |||||| ||||||||  | ||||
seq2  CACCTGTCCCAAGCAG-TTGGAGTAG-GCTCCA-TTGTCACT--TTAAGT  45

seq1  GAGGGCTCACATTTCCTTACCCCTGTACTCAGGCCTGTCTTCATTCACTC  100
      ||||||||||||||||||| ||||||||||||| ||||||||||||||| 
seq2  GAGGGCTCACATTTCCTTA-CCCTGTACTCAGG-CTGTCTTCATTCACTT  93

seq1  TACTGGCTCTGCCTCCCCTGGAGCCTCTTGTCTTGAGTTCTGCATCTAGA  150
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TACTGGCTCTGCCTCCCCTGGAGCCTC-TGTCTTGAG-TCTGCATCTAGA  141

seq1  CCTGTGTATACCGAAGTTCCTCCATACTGCTGTCTCAGCCTGGAGCCTTG  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGTGTATACCGAAGTTCCTCCATACTGCTGTCTCAGCCTGGAGCCTTG  190

seq1  CCATCCTCCTGCATGTCTTTTCTCTTGTTGATTCTTCCCATCTTCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCTGCATGTCTTTTCTCTTGTTGATTCTTCCCATCTTCAGTTG  240

seq1  GGTATTAGTTAGTTCCTACTGCTGTGATAAACATCACAGCCAAGACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAGTTAGTTCCTACTGCTGTGATAAACATCACAGCCAAGACCAAA  290

seq1  CATATTCATGTGCTTGGGTATAAAAGGGTTTCTTTCGCTTGCAGGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATGTGCTTGGGTATAAAAGGGTTTCTTTCGCTTGCAGGTTACA  340

seq1  GTCCATCATCAAAGAAGCCATGGCAGGAACTGAAGTCGAGACCATGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCATCAAAGAAGCCATGGCAGGAACTGAAGTCGAGACCATGGAGG  390

seq1  AGTGCTTTTTAACTGTTTTGCTCCCTTGACTTGTTCAGTTTGCTTCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTTTAACTGTTTTGCTCCCTTGACTTGTTCAGTTTGCTTCTTTT  440

seq1  TTTTTTTTTTCCTGAGCTGAGGCCCACACCCAGCTAGGCAAGCACTCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCCTGAGCTGAGGCCCACACCCAGCTAGGCAAGCACTCTAC  490

seq1  CACTGAGCTAAATCCCCAACCCCTCAGTTTGCTTTCTTACGTAACCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCTAAATCCCCAACCCCTCAGTTTGCTTTCTTACGTAACCCAGG  540

seq1  ACCATTTGCAAAGGAGTGCTGCTGCCTTCTGCTTCACAGTGAGCTTGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCAAAGGAGTGCTGCTGCCTTCTGCTTCACAGTGAGCTTGGCC  590

seq1  CTTCCACGTCCATTATTCAAGAAAATGCCTTGTAGACTTGCCTAGTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACGTCCATTATTCAAGAAAATGCCTTGTAGACTTGCCTAGTAGCA  640

seq1  ATCAGATAGAGGTGTTTTTTCTCTACTGAGGTCCCTCTTCCCAGATAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATAGAGGTGTTTTTTCTCTACTGAGGTCCCTCTTCCCAGATAATC  690

seq1  CTAGATTTTGTCAAGTTGACAAAAACTAGCACAGGGTGGATCCTTGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTTGTCAAGTTGACAAAAACTAGCACAGGGTGGATCCTTGGGGC  740

seq1  CTGACCCTGACCCTTTATGGAGCTATATCTCCATTTCTGTGGCTCTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCTGACCCTTTATGGAGCTATATCTCCATTTCTGTGGCTCTCACA  790

seq1  GTTTGCCATGTCCACAGCATTCCAGCTACTTTTGGCAGCCCTGGTACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCATGTCCACAGCATTCCAGCTACTTTTGGCAGCCCTGGTACACA  840

seq1  GTGCTCAGTAAACATTAGATTTCTTTCCTTTTCCATTTTGTTTCAGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCAGTAAACATTAGATTTCTTTCCTTTTCCATTTTGTTTCAGAGCT  890

seq1  TTTCTCCTCCTTGTCTTGACTCAGTGAGCCTTTTTTGAGGTCTTACTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCCTTGTCTTGACTCAGTGAGCCTTTTTTGAGGTCTTACTTGA  940

seq1  CAAGACCCCAGCTATTACTCCCAGGATCACAATGCCCAATCAGGGCTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCCCAGCTATTACTCCCAGGATCACAATGCCCAATCAGGGCTCTC  990

seq1  CGGTTCTACTTCAGAGAATTGTCCTTGGGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  CGGTTCTACTTCAGAGAATTGTCCTTGGGAATTC  1024