BAC Information

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BAC

Clone NameB6Ng01-148J13
Chromosome2 (Build37)
Map Location 52,115,203 - 52,278,464
singlet/doubletdoublet
Overlap geneNeb, LOC100041670, Arl5a
Upstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1
Downstream geneCacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148J13.bB6Ng01-148J13.g
ACCDH945155DH945156
length1,0281,172
definitionDH945155|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J13, 5' end.DH945156|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,277,432 - 52,278,464)(52,115,203 - 52,116,373)
sequence
gaattcactgtcacaaacacttgttgctagtcttggacctgtggagaagg
gggcacataagttaggtgtgtcttcgatgctttgttttacagaaggatca
gcacacgtttctatactcttttcatggagagctgcggagagaggctttgg
gtaattgcagagtttgctatatcgatgaacgcagagacttagcagctctg
gcttctcaaaaagcagctgctcaattaaagctgagctggtgaactgcttg
ctgggcccagaaaaccagagctatgtttaggtggggcacagattccggag
cgctcaaactttattctagatactgccatttattgacaccattaaaaagt
attgtagctggggctgtagcttagttggtagagggcctgcctccctttca
ccacacccattcaagagataacgggatgtggtggtggggtcccctgtgat
cctgtcacgtaggatgcacgtccttggttacatagtaaagttaaggccaa
cctgggctaacatgagattctgtctccgaatattttcctggaagagagga
agcaggctcgagtgacttctgtcagacaattgggaaaggaaacaagtgtg
ttgatgcttgttgatctttttaagaagccactgtcagcttttctgtcccc
tcttttctccctgttgactgagttgtgaatctttagcttagatttaggtt
tgccaacaatgactgtatctctagaacttgttaccagtgtttggtttaaa
tacctttctagggcagcagttctcaacctgtgggtctcaatctctaagac
catgggaaatcattgattttttttacttttataacagtagcaaatttata
gttatgggagtagtaacaaaatttatggctgagggggtcaccacaacatg
aggaactatggtaaaaggtctcgaatatgggaggctgagaacacggctct
gggtgttggatttagtcggatgatgaaagagacaaatccctcgcctttca
aagcggcttgttatagtcaagggcagca
gaattcctcttattaaaaataatagtgagtggctatcccttctatgtggc
tagtgcatcatgagtcagtatctaactcatcccatgaggccactgaaagg
aactctgtcctctggcaagatggtggtccttcatgattaaaaaaatactt
tactgaattttaaaacttctgactataatttgctcattcagattgtgatg
taactgaataattcataatatattcaaacgtatttttacccagaaatcca
ttgtctactgttgttagacttctgttcatattttagtctttgtagtatta
ccgccgcatattctttaacattaaaaccactctattagggctcagaattt
atgtttgaatgtttaaatttttatatccatacatatgaaaggttaacatt
tgccagcagagtaatctggtaaaaatgaaaatatccttccattgattgtt
tgtttacttgttcaaaactttacctagaatctacttgtgaagcacaaaac
attgtaagcaataaaaatccagtaaaaattgaatcttcccatacaagaaa
gagcaagaatgctgtaaacatttccttatgataatacacataataaggaa
atataaatatagggagatctgtgctctaatgctgcttgagatagggagtg
ccaacactggacgtacaaaatccccaccaaatagggaatcagtcactcat
tgtctgctaattaaaatgatttggaattcaaaagattttttaaacaactt
cactgacttagaagtgattagctgatctttctgaaaaggcacactgagtt
tgtaactcacatcacttgtattgattaagtttgctttagccagaatgatg
tcaggagtgtcaggcatgatgtggatctgagtcttgtccttgtcccaagc
tttctctataaagtcttctaaaatgagaaacaataatttattcagtggta
ttgtcaggttcaaatacaacagttggctccagatgccttatagcaagacg
gcatataaaatgagactaatttttctatctgaaatgcaactacctttcca
atacagaatatgggcttacctttttgaagttacggatactatttgtctac
gggatcaatccatgaaataaaacctttgttgatactactagttgtacaaa
caatctttttttttgtggccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_52277432_52278464
seq2: B6Ng01-148J13.b_46_1073 (reverse)

seq1  TGCTGCCCTGGACTATAACAAGCCGCTTTGTAAAGGCGAGGGGATTTGTC  50
      ||||||||| |||||||||||||||||||| |||||||| ||||||||||
seq2  TGCTGCCCTTGACTATAACAAGCCGCTTTG-AAAGGCGA-GGGATTTGTC  48

seq1  TCTTTCATTCTCCGACTTATTCCCAACACCCAGAGCCGTGGTTCTCAGCC  100
      ||||||||  ||||||| | | ||||||||||||||||| ||||||||||
seq2  TCTTTCATCATCCGACTAAAT-CCAACACCCAGAGCCGT-GTTCTCAGCC  96

seq1  TCCCATATTCGAAGACCCTTTTACATAGTTCCTCATGTTGTGGTGACCCC  150
      ||||||||||| ||||| |||  |||||||||||||||||||||||||||
seq2  TCCCATATTCG-AGACCTTTTACCATAGTTCCTCATGTTGTGGTGACCCC  145

seq1  CTCAGCCATAAATTTTTGTTACTACT-CCATAACTATAATTTTGCTACTG  199
      |||||||||||| ||||||||||||| |||||||||||| ||||||||||
seq2  CTCAGCCATAAA-TTTTGTTACTACTCCCATAACTATAAATTTGCTACTG  194

seq1  TTATAAAAGTAAAAAAAATCAATGATTTCCCATGGTCTTAGAGATTGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGTAAAAAAAATCAATGATTTCCCATGGTCTTAGAGATTGAGA  244

seq1  CCCACAGGTTGAGAACTGCTGCCCTAGAAAGGTATTTAAACCAAACACTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGTTGAGAACTGCTGCCCTAGAAAGGTATTTAAACCAAACACTG  294

seq1  GTAACAAGTTCTAGAGATACAGTCATTGTTGGCAAACCTAAATCTAAGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGTTCTAGAGATACAGTCATTGTTGGCAAACCTAAATCTAAGCT  344

seq1  AAAGATTCACAACTCAGTCAACAGGGAGAAAAGAGGGGACAGAAAAGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCACAACTCAGTCAACAGGGAGAAAAGAGGGGACAGAAAAGCTG  394

seq1  ACAGTGGCTTCTTAAAAAGATCAACAAGCATCAACACACTTGTTTCCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCTTCTTAAAAAGATCAACAAGCATCAACACACTTGTTTCCTTT  444

seq1  CCCAATTGTCTGACAGAAGTCACTCGAGCCTGCTTCCTCTCTTCCAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGTCTGACAGAAGTCACTCGAGCCTGCTTCCTCTCTTCCAGGAA  494

seq1  AATATTCGGAGACAGAATCTCATGTTAGCCCAGGTTGGCCTTAACTTTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCGGAGACAGAATCTCATGTTAGCCCAGGTTGGCCTTAACTTTAC  544

seq1  TATGTAACCAAGGACGTGCATCCTACGTGACAGGATCACAGGGGACCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACCAAGGACGTGCATCCTACGTGACAGGATCACAGGGGACCCCA  594

seq1  CCACCACATCCCGTTATCTCTTGAATGGGTGTGGTGAAAGGGAGGCAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACATCCCGTTATCTCTTGAATGGGTGTGGTGAAAGGGAGGCAGGC  644

seq1  CCTCTACCAACTAAGCTACAGCCCCAGCTACAATACTTTTTAATGGTGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCAACTAAGCTACAGCCCCAGCTACAATACTTTTTAATGGTGTC  694

seq1  AATAAATGGCAGTATCTAGAATAAAGTTTGAGCGCTCCGGAATCTGTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGGCAGTATCTAGAATAAAGTTTGAGCGCTCCGGAATCTGTGCC  744

seq1  CCACCTAAACATAGCTCTGGTTTTCTGGGCCCAGCAAGCAGTTCACCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAACATAGCTCTGGTTTTCTGGGCCCAGCAAGCAGTTCACCAGC  794

seq1  TCAGCTTTAATTGAGCAGCTGCTTTTTGAGAAGCCAGAGCTGCTAAGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTAATTGAGCAGCTGCTTTTTGAGAAGCCAGAGCTGCTAAGTCT  844

seq1  CTGCGTTCATCGATATAGCAAACTCTGCAATTACCCAAAGCCTCTCTCCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTCATCGATATAGCAAACTCTGCAATTACCCAAAGCCTCTCTCCG  894

seq1  CAGCTCTCCATGAAAAGAGTATAGAAACGTGTGCTGATCCTTCTGTAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCATGAAAAGAGTATAGAAACGTGTGCTGATCCTTCTGTAAAA  944

seq1  CAAAGCATCGAAGACACACCTAACTTATGTGCCCCCTTCTCCACAGGTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCGAAGACACACCTAACTTATGTGCCCCCTTCTCCACAGGTCC  994

seq1  AAGACTAGCAACAAGTGTTTGTGACAGTGAATTC  1033
      ||||||||||||||||||||||||||||||||||
seq2  AAGACTAGCAACAAGTGTTTGTGACAGTGAATTC  1028

seq1: chr2_52115203_52116373
seq2: B6Ng01-148J13.g_68_1239

seq1  GAATTCCTCTTATTAAAAATAATAGTGAGTGGCTATCCCTTCTATGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTATTAAAAATAATAGTGAGTGGCTATCCCTTCTATGTGGC  50

seq1  TAGTGCATCATGAGTCAGTATCTAACTCATCCCATGAGGCCACTGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATCATGAGTCAGTATCTAACTCATCCCATGAGGCCACTGAAAGG  100

seq1  AACTCTGTCCTCTGGCAAGATGGTGGTCCTTCATGATTAAAAAAATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTCCTCTGGCAAGATGGTGGTCCTTCATGATTAAAAAAATACTT  150

seq1  TACTGAATTTTAAAACTTCTGACTATAATTTGCTCATTCAGATTGTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAATTTTAAAACTTCTGACTATAATTTGCTCATTCAGATTGTGATG  200

seq1  TAACTGAATAATTCATAATATATTCAAACGTATTTTTACCCAGAAATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAATAATTCATAATATATTCAAACGTATTTTTACCCAGAAATCCA  250

seq1  TTGTCTACTGTTGTTAGACTTCTGTTCATATTTTAGTCTTTGTAGTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACTGTTGTTAGACTTCTGTTCATATTTTAGTCTTTGTAGTATTA  300

seq1  CCGCCGCATATTCTTTAACATTAAAACCACTCTATTAGGGCTCAGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGCATATTCTTTAACATTAAAACCACTCTATTAGGGCTCAGAATTT  350

seq1  ATGTTTGAATGTTTAAATTTTTATATCCATACATATGAAAGGTTAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAATGTTTAAATTTTTATATCCATACATATGAAAGGTTAACATT  400

seq1  TGCCAGCAGAGTAATCTGGTAAAAATGAAAATATCCTTCCATTGATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGAGTAATCTGGTAAAAATGAAAATATCCTTCCATTGATTGTT  450

seq1  TGTTTACTTGTTCAAAACTTTACCTAGAATCTACTTGTGAAGCACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTTGTTCAAAACTTTACCTAGAATCTACTTGTGAAGCACAAAAC  500

seq1  ATTGTAAGCAATAAAAATCCAGTAAAAATTGAATCTTCCCATACAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGCAATAAAAATCCAGTAAAAATTGAATCTTCCCATACAAGAAA  550

seq1  GAGCAAGAATGCTGTAAACATTTCCTTATGATAATACACATAATAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAATGCTGTAAACATTTCCTTATGATAATACACATAATAAGGAA  600

seq1  ATATAAATATAGGGAGATCTGTGCTCTAATGCTGCTTGAGATAGGGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATATAGGGAGATCTGTGCTCTAATGCTGCTTGAGATAGGGAGTG  650

seq1  CCAACACTGGACGTACAAAATCCCCACCAAATAGGGAATCAGTCACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGGACGTACAAAATCCCCACCAAATAGGGAATCAGTCACTCAT  700

seq1  TGTCTGCTAATTAAAATGATTTGGAATTCAAAAGATTTTTTAAACAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTAATTAAAATGATTTGGAATTCAAAAGATTTTTTAAACAACTT  750

seq1  CACTGACTTAGAAGTGATTAGCTGAGCTTTCTGAAAAGGCACACTGAGTT  800
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACTGACTTAGAAGTGATTAGCTGATCTTTCTGAAAAGGCACACTGAGTT  800

seq1  TGTAAACTCACATCACTTGTATTGATTAAGTTTGCTTTAGCCAGAATGAT  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGT-AACTCACATCACTTGTATTGATTAAGTTTGCTTTAGCCAGAATGAT  849

seq1  GTCAGGAGTGTCAGGCATGATGTGGATCTGAGTCTTGTCCTTGTCCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGTGTCAGGCATGATGTGGATCTGAGTCTTGTCCTTGTCCCAAG  899

seq1  C-TTCTCTATAAAGTC-TCTAAAATGAGAAACAATAATTTTATCAGTGGT  948
      | |||||||||||||| |||||||||||||||||||||||  ||||||||
seq2  CTTTCTCTATAAAGTCTTCTAAAATGAGAAACAATAATTTATTCAGTGGT  949

seq1  ATTGTCAGGTTCAAATACAACAGTTGGCTCCAGATGGCATTATAGCAAGA  998
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  ATTGTCAGGTTCAAATACAACAGTTGGCTCCAGAT-GCCTTATAGCAAGA  998

seq1  CGGCAATATAAAAGGAGACATAATTTTCTTATCTGAAATGCAACTACCTT  1048
      |||| |||||||| ||||| |||||||  |||||||||||||||||||||
seq2  CGGC-ATATAAAATGAGAC-TAATTTTTCTATCTGAAATGCAACTACCTT  1046

seq1  TCAAATACAGATTAT-GGCTTACCTTTTTGAAGTTACTGATACTA-TTGT  1096
      || |||||||| ||| ||||||||||||||||||||| ||||||| ||||
seq2  TCCAATACAGAATATGGGCTTACCTTTTTGAAGTTACGGATACTATTTGT  1096

seq1  CTACGGAAATCAACACATGAAATAAAACCTTTGTTGATACTATCAAGTTG  1146
      ||||||  |||||  ||||||||||||||||||||||||||| | |||||
seq2  CTACGG-GATCAATCCATGAAATAAAACCTTTGTTGATACTA-CTAGTTG  1144

seq1  TATCAACAA---TTTTTTTTTTGGCCAT  1171
      ||  |||||   |||||||| |||||||
seq2  TACAAACAATCTTTTTTTTTGTGGCCAT  1172