BAC Information

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BAC

Clone NameB6Ng01-148J23
Chromosome2 (Build37)
Map Location 24,695,682 - 24,893,074
singlet/doubletdoublet
Overlap geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneNelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148J23.bB6Ng01-148J23.g
ACCDH945175DH945176
length1,1431,070
definitionDH945175|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J23, 5' end.DH945176|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,695,682 - 24,696,813)(24,892,014 - 24,893,074)
sequence
gaattcagagttctctttttctcggcagaagcacaaaaaggaagtctaga
aagaaaaccaggtacagaactcaaagataagccctcagagcaggtgcttg
tggcctaggccacagagggcagcaggacatctgaaggtaccggtccatga
aggcaatgacagaagcatcgtaagagaagagctgtcctacgggcctggtg
gatgcacatgtatctcatgaacagagtcatcagagataagatcccagcga
taactaacagagcacagaggatggaggcacgccctcctctatactcaaga
cagaaatccacacaacaaaacaagggaaactgagggcacaaggtcatttg
tctatagtaagaaagctcaagaactatggtgaagggcttatggaatagac
cctatatgggtacggtgctggaatgagtctctgcagaagactcttgaagc
ccggcaggcgggctgggctcttaccgccgtgcagaagtagccgcagccag
gacagcactggtgcttcaccatgcgaccccgatggtcttcacataacacc
aagagcggtgctttgttggatgggcgcatcagctcatacttgaccacgct
gtttgtacaccggcccaactgcaagcagacaagaccaggcatcagtgaca
gagctgcaagggaacagctttttccactcactgggcaatggaaagcacca
gacatacgggaagttctcagcagatatgaggtgactaaaggagccacgag
ccttcagaaacaagcctagattcacaagcaatataaagtgcctgtcacac
aacagaaagccccaactaccaaaaaaaggaagtcactgtctattgcacag
cccagggatgatgacagcaggtaaccaaattcagaggctaggtgatcaga
gaatcaagggctcagtctgggcatatacccaggaaaacatcaggaggaaa
agagagctagacaatgaaatactcttagtaagatgtgaaggctatcacaa
gtggccagtatgttaacagttcaatggagtcccaagtgatccatctggaa
gtctcctacccatgcattcaaagcttgaaatggtaagaaacagagcaatg
tcctctcagaatatgccccaagggaaacccaggccacagaaaa
gaattctgagttccaggacagccagggctacacagagaaaccctgtctcg
gggatgagggggagtagaaactttttaagcaggcaaatctgtcccactac
agaggaagagcagaggacagcaggtccatatgcacctcgaggccactgct
tcaacctggacagtagcaagtagccacacatttttaatatccatccctgt
taagaggccatcctgcgtaagatagatgagatcttgcaacacaaaacatg
taggtgcgggctggagggatggctcagtggttaagagtagcggctgctct
tccaggggttctgagtttaattcccagcaaccacatggtggctcatgatc
atctatactgggacctgatggatctggcgcccatttctggcatgcaagtg
tacatgcagacaaagcattaattcaatcaatcaatattaaaaacaacaca
cacacatacaacaaacaaacaaaaacaaaaaacaagacagggaactagct
gctggcctaaccccactgggtctgccggccctccaggtgcttctgctgtc
taagtaccccgcctgactccacctgccttcagggtatctttgctgtctaa
gttcccctgctgctcttggaagctctataaaagaagtgtagagctcccta
gtctagagatcatagtctaggctctcacagccaaagcttccagatctttg
ccatcaagcccatggtgaccatgtctctgtctgccaaaggctctggttct
gtgtaggaaggcaggatgctttcctcctacagagcacaaagtaggcaagt
ctaggtgagagcagcctctggacttattggaaccaggtatttcaaaagtc
aggaggctcacccatgctaccgctcttcactctatggagtatagcctaaa
ggccgtcagtgccatccccacgtgcctgctggctgggacacactgtcacc
tggctgcctgaacagcttctctctagattcctgggatccagggaaattag
aggacaagggaccaacatccttccatggaaaaaaagataaacgtctgttt
tcatcctggtggatttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_24695682_24696813
seq2: B6Ng01-148J23.b_46_1188

seq1  GAATTCAGAGTTCTCTTTTTCTCGGCAGAAGCACAAAAAGGAAGTCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTTCTCTTTTTCTCGGCAGAAGCACAAAAAGGAAGTCTAGA  50

seq1  AAGAAAACCAGGTACAGAACTCAAAGATAAGCCCTCAGAGCAGGTGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACCAGGTACAGAACTCAAAGATAAGCCCTCAGAGCAGGTGCTTG  100

seq1  TGGCCTAGGCCACAGAGGGCAGCAGGACATCTGAAGGTACCGGTCCATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGGCCACAGAGGGCAGCAGGACATCTGAAGGTACCGGTCCATGA  150

seq1  AGGCAATGACAGAAGCATCGTAAGAGAAGAGCTGTCCTACGGGCCTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGACAGAAGCATCGTAAGAGAAGAGCTGTCCTACGGGCCTGGTG  200

seq1  GATGCACATGTATCTCATGAACAGAGTCATCAGAGATAAGATCCCAGCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACATGTATCTCATGAACAGAGTCATCAGAGATAAGATCCCAGCGA  250

seq1  TAACTAACAGAGCACAGAGGATGGAGGCACGCCCTCCTCTATACTCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACAGAGCACAGAGGATGGAGGCACGCCCTCCTCTATACTCAAGA  300

seq1  CAGAAATCCACACAACAAAACAAGGGAAACTGAGGGCACAAGGTCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCACACAACAAAACAAGGGAAACTGAGGGCACAAGGTCATTTG  350

seq1  TCTATAGTAAGAAAGCTCAAGAACTATGGTGAAGGGCTTATGGAATAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTAAGAAAGCTCAAGAACTATGGTGAAGGGCTTATGGAATAGAC  400

seq1  CCTATATGGGTACGGTGCTGGAATGAGTCTCTGCAGAAGACTCTTGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATGGGTACGGTGCTGGAATGAGTCTCTGCAGAAGACTCTTGAAGC  450

seq1  CCGGCAGGCGGGCTGGGCTCTTACCGCCGTGCAGAAGTAGCCGCAGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGGCGGGCTGGGCTCTTACCGCCGTGCAGAAGTAGCCGCAGCCAG  500

seq1  GACAGCACTGGTGCTTCACCATGCGACCCCGATGGTCTTCACATAACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCACTGGTGCTTCACCATGCGACCCCGATGGTCTTCACATAACACC  550

seq1  AAGAGCGGTGCTTTGTTGGATGGGCGCATCAGCTCATACTTGACCACGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGGTGCTTTGTTGGATGGGCGCATCAGCTCATACTTGACCACGCT  600

seq1  GTTTGTACACCGGCCCAACTGCAAGCAGACAAGACCAGGCATCAGTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTACACCGGCCCAACTGCAAGCAGACAAGACCAGGCATCAGTGACA  650

seq1  GAGCTGCAAGGGAACAGC-TTTTCCACTCACTGGGCAATGGAAAGCACCA  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGCTGCAAGGGAACAGCTTTTTCCACTCACTGGGCAATGGAAAGCACCA  700

seq1  GACATACGGGAAGTTCTCAGCAGATATGAGGTGACTAAAGGAGCCACGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACGGGAAGTTCTCAGCAGATATGAGGTGACTAAAGGAGCCACGAG  750

seq1  CCTTCAGAAACAAGCCTAGATTCACAAGCAATATAAAGTGCCTGTCACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAAACAAGCCTAGATTCACAAGCAATATAAAGTGCCTGTCACAC  800

seq1  AACAGAAAGCCCCAACTACCAAAAAAAGGAAGTCACTGTCTATTGCACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGCCCCAACTACCAAAAAAAGGAAGTCACTGTCTATTGCACAG  850

seq1  CCCAGGGATGATGACAGCAGGTAACCAAATTCAGAGGCTAGGTGATCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGATGATGACAGCAGGTAACCAAATTCAGAGGCTAGGTGATCAGA  900

seq1  GAATCAAGGGCTCAGTCTGGGCATATACCAAGGAAAACATCAGGAGGAAA  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATCAAGGGCTCAGTCTGGGCATATACCCAGGAAAACATCAGGAGGAAA  950

seq1  AGAGAGCTAGACAATGAAATACTCTAGGTAAGAAGGTGAAGGCTATCACA  999
      |||||||||||||||||||||||||  ||||| | |||||||||||||||
seq2  AGAGAGCTAGACAATGAAATACTCTTAGTAAG-ATGTGAAGGCTATCACA  999

seq1  AGTGGCCAGTATGTT-ACAGTTCAAT-GAGTCCCAAGTGATCCATCT-GA  1046
      ||||||||||||||| |||||||||| |||||||||||||||||||| ||
seq2  AGTGGCCAGTATGTTAACAGTTCAATGGAGTCCCAAGTGATCCATCTGGA  1049

seq1  AGTCTCCTACACATGCAATCAAAGC-TGAGAT-GTAAGAAACAGAGCAAT  1094
      |||||||||| |||||| ||||||| ||| || |||||||||||||||||
seq2  AGTCTCCTACCCATGCATTCAAAGCTTGAAATGGTAAGAAACAGAGCAAT  1099

seq1  GT-CTCTCAG-ATATG-CCCAAGGG--ACACAAG-CACAGAAAA  1132
      || ||||||| ||||| ||||||||  || || | |||||||||
seq2  GTCCTCTCAGAATATGCCCCAAGGGAAACCCAGGCCACAGAAAA  1143

seq1: chr2_24892014_24893074
seq2: B6Ng01-148J23.g_69_1138 (reverse)

seq1  GGAG-AATCCAC--AGATGAAAACAGACGTTT-TCTTTTTT--CATGGAA  44
      |||| |||||||   ||||||||||||||||| ||||||||  |||||||
seq2  GGAGAAATCCACCAGGATGAAAACAGACGTTTATCTTTTTTTCCATGGAA  50

seq1  GG-TGTTGTTCCTTTGTCCTCTAGTTTCCCTGGAT-CCAGGAATCTAGAA  92
      || ||||| ||| |||||||||| ||||||||||| |||||||||||| |
seq2  GGATGTTGGTCCCTTGTCCTCTAATTTCCCTGGATCCCAGGAATCTAG-A  99

seq1  GAGAAGCTG-TCAGGCAGCCAGGTGACAGTGTTGTCCCAGCCAGCAGGCA  141
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  GAGAAGCTGTTCAGGCAGCCAGGTGACAGTG-TGTCCCAGCCAGCAGGCA  148

seq1  CGT-GGGATGGCACCTGACGGCCTTTAGGCTATACTCCATAGAGTGAAGA  190
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGATGGCA-CTGACGGCCTTTAGGCTATACTCCATAGAGTGAAGA  197

seq1  GCGGTAGCATGGGTGAGCCTCCTGACTTTTGAAATACCTGGTTCCAATAA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTAGCATGGGTGAGCCTCCTGACTTTTGAAATACCTGGTTCCAATAA  247

seq1  GTCCAGAGGCTGCTCTCACCTAGACTTGCCTACTTTGTGCTCTGTAGGAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGGCTGCTCTCACCTAGACTTGCCTACTTTGTGCTCTGTAGGAG  297

seq1  G-AAGCATCCTGCCTTCCTACACAGAACCAGAGCCTTTGGCAGACAGAGA  339
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATCCTGCCTTCCTACACAGAACCAGAGCCTTTGGCAGACAGAGA  347

seq1  CATGGTCACCATGGGCTTGATGGC-AAGATCTGGAAGCTTTGGCTGTGAG  388
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGGTCACCATGGGCTTGATGGCAAAGATCTGGAAGCTTTGGCTGTGAG  397

seq1  AGCCTAGACTATGATCTCTAGACTAGGGAGCTCTACACTTCTTTTATAGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGACTATGATCTCTAGACTAGGGAGCTCTACACTTCTTTTATAGA  447

seq1  GCTTCCAAGAGCAGCAGGGGAACTTAGACAGCAAAGATACCCTGAAGGCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAAGAGCAGCAGGGGAACTTAGACAGCAAAGATACCCTGAAGGCA  497

seq1  GGTGGAGTCAGGCGGGGTACTTAGACAGCAGAAGCACCTGGAGGGCCGGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGTCAGGCGGGGTACTTAGACAGCAGAAGCACCTGGAGGGCCGGC  547

seq1  AGACCCAGTGGGGTTAGGCCAGCAGCTAGTTCCCTGTCTTGTTTTTTGTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGTGGGGTTAGGCCAGCAGCTAGTTCCCTGTCTTGTTTTTTGTT  597

seq1  TTTGTTTGTTTGTTGTATGTGTGTGTGTTGTTTTTAATATTGATTGATTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTGTATGTGTGTGTGTTGTTTTTAATATTGATTGATTG  647

seq1  AATTAATGCTTTGTCTGCATGTACACTTGCATGCCAGAAATGGGCGCCAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGCTTTGTCTGCATGTACACTTGCATGCCAGAAATGGGCGCCAG  697

seq1  ATCCATCAGGTCCCAGTATAGATGATCATGAGCCACCATGTGGTTGCTGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCAGGTCCCAGTATAGATGATCATGAGCCACCATGTGGTTGCTGG  747

seq1  GAATTAAACTCAGAACCCCTGGAAGAGCAGCCGCTACTCTTAACCACTGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAACTCAGAACCCCTGGAAGAGCAGCCGCTACTCTTAACCACTGA  797

seq1  GCCATCCCTCCAGCCCGCACCTACATGTTTTGTGTTGCAAGATCTCATCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCTCCAGCCCGCACCTACATGTTTTGTGTTGCAAGATCTCATCT  847

seq1  ATCTTACGCAGGATGGCCTCTTAACAGGGATGGATATTAAAAATGTGTGG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACGCAGGATGGCCTCTTAACAGGGATGGATATTAAAAATGTGTGG  897

seq1  CTACTTGCTACTGTCCAGGTTGAAGCAGTGGCCTCGAGGTGCATATGGAC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCTACTGTCCAGGTTGAAGCAGTGGCCTCGAGGTGCATATGGAC  947

seq1  CTGCTGTCCTCTGCTCTTCCTCTGTAGTGGGACAGATTTGCCTGCTTAAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCCTCTGCTCTTCCTCTGTAGTGGGACAGATTTGCCTGCTTAAA  997

seq1  AAGTTTCTACTCCCCCTCATCCCCGAGACAGGGTTTCTCTGTGTAGCCCT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTACTCCCCCTCATCCCCGAGACAGGGTTTCTCTGTGTAGCCCT  1047

seq1  GGCTGTCCTGGAACTCAGAATTC  1061
      |||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCAGAATTC  1070