BAC Information

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BAC

Clone NameB6Ng01-148K09
Chromosome1 (Build37)2 (Build37)
Map Location 49,630,574 - 49,631,220142,776,211 - 142,776,761
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430, LOC100041981
Downstream geneEG666962, EG666970, LOC100041993
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148K09.bB6Ng01-148K09.g
ACCDH945195DH945196
length6471,014
definitionDH945195|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K09, 5' end.DH945196|Mus musculus domesticus DNA, BAC clone: B6Ng01-148K09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,630,574 - 49,631,220)(142,776,211 - 142,776,761)
sequence
gaattcactctctgagctatgtgactttttttgtatatacttaaataata
tttactgcagtatttgaaatcttaaaataaacatttactttgcccctaat
gccagatttgtaagccttttattatttacattttcatatgtatttatttt
attattattttaaattttcagatatattattattatcaatgtctgatttt
atagtatatttacatgtacacatgtgtatgtgttggctcatgtgcatgca
ttaagatgtggaagatagagttcacgtcaagagccttctacagttttccc
atttacttgtgagactacatctctaactgtgctagaactccctaatttgg
tagactgactgaccacctgttcctgttcttccagtgttaggactacagcc
atctgtcaccaaactaagctctgactggggactagctatcacaactcaga
ttcttgtcatgtaacaacatgggatttattgactaagtcttcttcatagc
ccttgaaagagatacttttgattttattagtattaaagaatgacatatat
ttctgaaccagaaaataaatgagatttttattctcatctctctctgtata
tatatatatatatatatatatatatatatatatatatatatatatat
gaattctttgtttagctctgagctccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatacatattggatattggtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgtaaattctcgatcttacagcaaagccattgctgttc
tattcaggaattttttccccctgtgcccatatctttgaggcttttcccca
ttttgtcctctataagtttcacagtctctagttttatgtggagttccttg
atccacttagattggaccttagtacaaggagataggaatggatcaatttg
cattctctacatgttaactcccagtcgtgccagcaccatttgttgaaaat
gctgtcttttttccattggatggttttagctcccttgtcaaatatcaatt
gaccataggtgtgtgggttcatttctgtgtcttcaattctattccattgg
tctacttccctgtcactattccagtaccatgcagtttttatcacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgacaagagtttttgctattctaggttttttattactacagatg
aatttgcagattgccctttctaattcttgaagaattgagttggaattttg
atggggattgcattggatctgtagattgcttttggcaagatagccatttt
tactatatttgatcctgccaatccatgagcatgggagtttttccatcttc
tgggatctttattttcttcttcagaggcttatcatccagatctttcactt
ccttattagagtcatgccaagtatttttatattatttgtgactactgtga
aggggcattgcttccctaatttcttctcagcctgtttattcttttgtgga
gaagaaaggcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49630574_49631220
seq2: B6Ng01-148K09.b_47_693

seq1  GAATTCACTCTCTGAGCTATGTGACTTTTTTTGTATATACTTAAATAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCTGAGCTATGTGACTTTTTTTGTATATACTTAAATAATA  50

seq1  TTTACTGCAGTATTTGAAATCTTAAAATAAACATTTACTTTGCCCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCAGTATTTGAAATCTTAAAATAAACATTTACTTTGCCCCTAAT  100

seq1  GCCAGATTTGTAAGCCTTTTATTATTTACATTTTCATATGTATTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATTTGTAAGCCTTTTATTATTTACATTTTCATATGTATTTATTTT  150

seq1  ATTATTATTTTAAATTTTCAGATATATTATTATTATCAATGTCTGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTTAAATTTTCAGATATATTATTATTATCAATGTCTGATTTT  200

seq1  ATAGTATATTTACATGTACACATGTGTATGTGTTGGCTCATGTGCATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATATTTACATGTACACATGTGTATGTGTTGGCTCATGTGCATGCA  250

seq1  TTAAGATGTGGAAGATAGAGTTCACGTCAAGAGCCTTCTACAGTTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGTGGAAGATAGAGTTCACGTCAAGAGCCTTCTACAGTTTTCCC  300

seq1  ATTTACTTGTGAGACTACATCTCTAACTGTGCTAGAACTCCCTAATTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTGTGAGACTACATCTCTAACTGTGCTAGAACTCCCTAATTTGG  350

seq1  TAGACTGACTGACCACCTGTTCCTGTTCTTCCAGTGTTAGGACTACAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGACTGACCACCTGTTCCTGTTCTTCCAGTGTTAGGACTACAGCC  400

seq1  ATCTGTCACCAAACTAAGCTCTGACTGGGGACTAGCTATCACAACTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCACCAAACTAAGCTCTGACTGGGGACTAGCTATCACAACTCAGA  450

seq1  TTCTTGTCATGTAACAACATGGGATTTATTGACTAAGTCTTCTTCATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCATGTAACAACATGGGATTTATTGACTAAGTCTTCTTCATAGC  500

seq1  CCTTGAAAGAGATACTTTTGATTTTATTAGTATTAAAGAATGACATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAAGAGATACTTTTGATTTTATTAGTATTAAAGAATGACATATAT  550

seq1  TTCTGAACCAGAAAATAAATGAGATTTTTATTCTCATCTCTCTCTGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACCAGAAAATAAATGAGATTTTTATTCTCATCTCTCTCTGTATA  600

seq1  TATATATATATATATATATATATATATATATATATATATATATATAT  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATATATAT  647

seq1: chr2_142776211_142776761
seq2: B6Ng01-148K09.g_546_1082 (reverse)

seq1  CAATGGCCTTTC-TCTATAC-AAAGAATAAACAGGCTGAGAAAGAAATTA  48
      |||| ||||||| |||  || ||||||||||||||||||| |||||||||
seq2  CAAT-GCCTTTCTTCTCCACAAAAGAATAAACAGGCTGAG-AAGAAATTA  48

seq1  GGGAAACAA-CACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGG  97
      ||||| |||   |||||| || ||||||||||||||||||||   || ||
seq2  GGGAAGCAATGCCCCTTCACAGTAGTCACAAATAATATAAAAATACTTGG  98

seq1  CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGT  147
      | ||||||||| ||||||||||||||||||| |||||         ||| 
seq2  CATGACTCTAA-TAAGGAAGTGAAAGATCTGGATGAT---------AAGC  138

seq1  CTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCCA  197
      |||||||| |||||| ||   |||||| ||||||||||||  | ||||||
seq2  CTCTGAAG-AAGAAAATA---AAGATCCCAGAAGATGGAA-AAACTCCCA  183

seq1  TGCTCATGGATTGGCAGGATC-AACATTGTAAAAATGGCTATCTTGCCAA  246
      ||||||||||||||||||||| || || ||||||||||||||||||||||
seq2  TGCTCATGGATTGGCAGGATCAAATATAGTAAAAATGGCTATCTTGCCAA  233

seq1  AAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC  296
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGCAATCTACAGATCCAATGCAATCCCCATCAAAATTCCAACTCAATTC  283

seq1  TTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAA  346
      ||||| ||||||||| | ||||| |||||||||||||| | ||| |||||
seq2  TTCAA-GAATTAGAAAGGGCAATCTGCAAATTCATCTGTAGTAATAAAAA  332

seq1  ACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA  396
      |||||| |||||||||| |||| |||||||||||||||||||||||||||
seq2  ACCTAGAATAGCAAAAACTCTTGTCAAGGATAAAAGAACCTCTGGTGGAA  382

seq1  TCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACT  446
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAAACT  432

seq1  GCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGA  496
      |||||||||||| |||| |||||  |||||||||||||||||||||||||
seq2  GCATGGTACTGGAATAGTGACAGGGAAGTAGACCAATGGAATAGAATTGA  482

seq1  AGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGG  546
      |||| |||||||||||||||||||||||||||| ||||| || |||||||
seq2  AGACACAGAAATGAACCCACACACCTATGGTCAATTGATATTTGACAAGG  532

seq1  GAGCT  551
      |||||
seq2  GAGCT  537