BAC Information

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BAC

Clone NameB6Ng01-148L03
Chromosome2 (Build37)15 (Build37)
Map Location 126,604,856 - 126,606,095103,040,306 - 103,040,599
singlet/doubletsingletsinglet
Overlap geneUsp50
Upstream gene3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714
Downstream geneTrpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148L03.bB6Ng01-148L03.g
ACCDH945231DH945232
length1,212353
definitionDH945231|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L03, 5' end.DH945232|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,604,856 - 126,606,095)(103,040,306 - 103,040,599)
sequence
gaattcctcctgggcagttggacctgggcttttttgccttcctgttggct
tggaggaatggttttgtcttgttttgagctgtttgattttgttgaaccag
ttgggctatgatcctctgaatgtctgagcacatctggagtaattttgggc
tcttcagcacaggaatgtgagaatttcagatgtctataatatctgcacat
ggagcagggctgaggcaggaagattccgagtcatagacctgactgggctc
cacagtaaaacttagtttcagaaaaaaataaaagtaaataaaaaaaataa
ttttaggaactggacagagggttcagtggttaagagctttggctgcactg
gacagtagcggcgcatgtctttaatcccagacctcaggaagggaatctct
gagttggaggccagcctggtatacagagtgagttctaggacagtcaggtc
tatacagaggaaccctgtctcgaaaaaacaaacaaacaaaaacaaacact
ggctcttttccagaggacctgggttcaattcccaacacccacatggatgg
tggatggaaattgtctgacaccctcttctggcctccataggaacctggca
aacaagtagtacacagacatacatgcataaacaataaaaattttttaaaa
ttttaagtaaaaaaaaaaaagcaaaacaaccactaaataacaaatatcct
aacctggacattttcctcaggaccccagcaccagagcaggtgctgggcag
gccatgcagtctgaatacacatacagcctacatctcctagctcagacttg
ttagttcttacctttttcaaagcttcgtgaagctcgttgaggacgtaaat
cagaactcctgcgcatcttgctgtgtctttttcagaaaagctgggtaaag
actgccaacagccgacagaaatatctctggtgagacacagtctgagtccc
caagccacatatctgtcatcagtagcaaagcgttgtaaccttcactgcag
tccctgagaagagagcagaagcaaaggcaaattattcctgctgatttaat
gaaaagaaaagaccagtctcgttgcaggatcgtccacgcccctgcccaga
tcctgtccacttgccctcgcaccctccaggtagtttctctggacttactg
tgttctgggcttggacctccaagactcaacgtcttcctacctcacctggg
gaactggggtgg
attcttggtactgaaaacctagctagctacccacagctgatgatgtcata
aaccctactgccacttccctacaccagtacaatttataactgcattctat
tttttttttaagatttatttataagccaggcatggtggctcacgccttta
atcccagcactcaggaggcagaggcaggcaaatttctgagttcaaggcca
gcctggtctaaaaaaaccaacaacaaaaaaagatttatttattatttttt
ttaaatattcttttttttaaagatttattttattatatgtaagtacactg
tagctgtcttcaggcacaccagaagagagtgtcagatctcattatggatg
gtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_126604856_126606095
seq2: B6Ng01-148L03.b_47_1258

seq1  GAATTCCTCCTGGGCAGTTGGACCTGGGCTTTTTTGCCTTCCTGTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGGGCAGTTGGACCTGGGCTTTTTTGCCTTCCTGTTGGCT  50

seq1  TGGAGGAATGGTTTTGTCTTGTTTTGAGCTGTTTGATTTTGTTGAACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAATGGTTTTGTCTTGTTTTGAGCTGTTTGATTTTGTTGAACCAG  100

seq1  TTGGGCTATGATCCTCTGAATGTCTGAGCACATCTGGAGTAATTTTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTATGATCCTCTGAATGTCTGAGCACATCTGGAGTAATTTTGGGC  150

seq1  TCTTCAGCACAGGAATGTGAGAATTTCAGATGTCTATAATATCTGCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCACAGGAATGTGAGAATTTCAGATGTCTATAATATCTGCACAT  200

seq1  GGAGCAGGGCTGAGGCAGGAAGATTCCGAGTCATAGACCTGACTGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGCTGAGGCAGGAAGATTCCGAGTCATAGACCTGACTGGGCTC  250

seq1  CACAGTAAAACTTAGTTTCAGAAAAAAATAAAAGTAAATAAAAAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAAAACTTAGTTTCAGAAAAAAATAAAAGTAAATAAAAAAAATAA  300

seq1  TTTTAGGAACTGGACAGAGGGTTCAGTGGTTAAGAGCTTTGGCTGCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAACTGGACAGAGGGTTCAGTGGTTAAGAGCTTTGGCTGCACTG  350

seq1  GACAGTAGCGGCGCATGTCTTTAATCCCAGACCTCAGGAAGGGAATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGCGGCGCATGTCTTTAATCCCAGACCTCAGGAAGGGAATCTCT  400

seq1  GAGTTGGAGGCCAGCCTGGTATACAGAGTGAGTTCTAGGACAGTCAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAGGCCAGCCTGGTATACAGAGTGAGTTCTAGGACAGTCAGGTC  450

seq1  TATACAGAGGAACCCTGTCTCGAAAAAACAAACAAACAAAAACAAACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGAGGAACCCTGTCTCGAAAAAACAAACAAACAAAAACAAACACT  500

seq1  GGCTCTTTTCCAGAGGACCTGGGTTCAATTCCCAACACCCACATGGATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTTTCCAGAGGACCTGGGTTCAATTCCCAACACCCACATGGATGG  550

seq1  TGGATGGAAATTGTCTGACACCCTCTTCTGGCCTCCATAGGAACCTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAAATTGTCTGACACCCTCTTCTGGCCTCCATAGGAACCTGGCA  600

seq1  AACAAGTAGTACACAGACATACATGCATAAACAATAAAAATTTTTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAGTACACAGACATACATGCATAAACAATAAAAATTTTTTAAAA  650

seq1  TTTTAAGTAAAAAAAAAAAAGCAAAACAACCACTAAATAACAAATATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAAAAAAAAAAAAGCAAAACAACCACTAAATAACAAATATCCT  700

seq1  AACCTGGACATTTTCCTCAGGACCCCAGCACCAGAGCAGGTGCTGGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGACATTTTCCTCAGGACCCCAGCACCAGAGCAGGTGCTGGGCAG  750

seq1  GCCATGCAGTCTGAATACACATACAGCCTACATCTCCTAGCTCAGACTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCAGTCTGAATACACATACAGCCTACATCTCCTAGCTCAGACTTG  800

seq1  TTAGTTCTTACCTTTTTCAAAGCTTCGTGAAGCTCGTTGAGGACGTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTTACCTTTTTCAAAGCTTCGTGAAGCTCGTTGAGGACGTAAAT  850

seq1  CAGGAACTCCTGCGCATCTTGCTGTGTCTTTTTCAGAAAAGCTGGGTAAA  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GAACTCCTGCGCATCTTGCTGTGTCTTTTTCAGAAAAGCTGGGTAAA  899

seq1  GACTGCCAACAGCCGACAGAAATATCTCTGGTGAGACACAGTCTGAGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCAACAGCCGACAGAAATATCTCTGGTGAGACACAGTCTGAGTCC  949

seq1  CCAAGCCACATATCTGTCATCAGGTAGGCAAAGGCGGTGGTAACC-TCAC  999
      |||||||||||||||||||||| ||| ||||||   || |||||| ||||
seq2  CCAAGCCACATATCTGTCATCA-GTA-GCAAAG--CGTTGTAACCTTCAC  995

seq1  TGCAGTCCCTGAGAAGAAGAGCAGAGGCAAAGGGCAAATATTCCCTGCTG  1049
      |||||||||||||||| |||||||| ||||| |||||||  | |||||||
seq2  TGCAGTCCCTGAGAAG-AGAGCAGAAGCAAA-GGCAAATTATTCCTGCTG  1043

seq1  ATTTAATGAAAAGAAAAGACCCAGTCTCCGTGGCAAGGGATCCGTCCACG  1099
      ||||||||||||||||||| ||||||| ||| |||  |||| ||||||||
seq2  ATTTAATGAAAAGAAAAGA-CCAGTCT-CGTTGCA--GGAT-CGTCCACG  1088

seq1  CCCCTGCACCAGAGCCCTGTCCACCTTGCTCTCCGCACCCTCCATGTGTG  1149
      ||||||| |||||  |||||||| ||||| || ||||||||||| ||   
seq2  CCCCTGC-CCAGA-TCCTGTCCA-CTTGCCCT-CGCACCCTCCAGGTAGT  1134

seq1  TTCTCTGGGGACCTACTGTG-TCTGGGCTTGTGGCCCTTCACAAGGACTC  1198
      ||||||  |||| ||||||| ||||||||  ||| |||   | | |||||
seq2  TTCTCT--GGACTTACTGTGTTCTGGGCT--TGGACCT---CCAAGACTC  1177

seq1  CAGCGGGTCCTTTCCTCACCTCACCTGGGGGAGCTGGGGTGG  1240
       |    |||  ||||| ||||||||| ||||| |||||||||
seq2  AA---CGTC--TTCCT-ACCTCACCT-GGGGAACTGGGGTGG  1212

seq1: chr15_103040306_103040599
seq2: B6Ng01-148L03.g_174_427

seq1  TTTTGTTTTTAAGATTTATTTAGGGGGCTGGAGAGGTGGTTCAGTGGCTA  50
      |||| |||||||||||||||||   | | ||   ||||| ||        
seq2  TTTTTTTTTTAAGATTTATTTATAAGCCAGGCATGGTGGCTC--------  42

seq1  AGAGCACTGGCTGCTCTTCCAGAGGTCTTGAGTTCAATTCCCAGCAACCA  100
                            | | |||       | ||||||||  ||
seq2  ----------------------ACGCCTT------TAATCCCAGCACTCA  64

seq1  CATGGTGGCTCACAACCATCTATAGGGGAATTTGATGCCCTCTTCA--GG  148
         || ||  || |  |      |||  |||||    |    ||||  | 
seq2  ---GGAGG--CAGAGGC------AGGCAAATTT----CTGAGTTCAAGGC  99

seq1  CAGGCGGATGTATATGCAAC-AGAGCACTCATACATGAAATAAATAAAAT  197
      ||| | | | || |   | | | | ||   | | ||  | | | ||   |
seq2  CAGCCTGGTCTAAAAAAACCAACAACAAAAAAAGATTTATTTATTATTTT  149

seq1  TAAAAAAAA----------AAAAGATTTATTTATTATTATATGTAAGTAC  237
      |   ||| |           |||||||||||  |||||||||||||||||
seq2  TTTTAAATATTCTTTTTTTTAAAGATTTATT--TTATTATATGTAAGTAC  197

seq1  ACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCGTCAGATCTCATTATG  287
      ||||||||||||||||| ||||||||||||| | ||||||||||||||||
seq2  ACTGTAGCTGTCTTCAGGCACACCAGAAGAGAGTGTCAGATCTCATTATG  247

seq1  GATGGTT  294
      |||||||
seq2  GATGGTT  254