BAC Information

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BAC

Clone NameB6Ng01-148L11
Chromosome2 (Build37)4 (Build37)
Map Location 156,509,099 - 156,510,059120,519,572 - 120,519,745
singlet/doubletsingletsinglet
Overlap geneDlgap4
Upstream geneTrpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
Downstream geneMyl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148L11.bB6Ng01-148L11.g
ACCDH945247DH945248
length964612
definitionDH945247|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L11, 5' end.DH945248|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(156,509,099 - 156,510,059)(120,519,572 - 120,519,745)
sequence
gaattctgagttaaagcagactgccctcctccagggcaaagccccctcac
attctatgggcaacccccccccttgcctctacttatgttcctgccttccc
tgtttcaacagatccttgtctcttggggttgttctctgatcatgccaaca
tctttctccctgtattttctgccctgacatcaaaatgcttccctttggaa
tgtttgctgctgagcactgtgcaccaggttctgctgaggaggaaggacag
cccgactgtccctgctatcaagggatgtcagtccatgactttagagtagg
gcttgagtttcctttcttcctcccccaccccccttccaggatctttctcc
atggctctcacttgcctggaactatgtatagcaagctggcttccagctct
gagatccacgggtcccaacggctggacctaaaggctcacaccatcatgcc
tacagagctcccctgtttcttctttgctgtgaccttgggcaaattgttgg
ggatttccagccttgtctgtcctgtgggttgctacaaagaggctctaagg
ctacataatcacagccatgcccatgcttgggtagaggatgcagtctgagg
ttggccagggctggaggagacacctgtctggggaaaggggatagcttacc
ctcaggtgggactcctgtgtgggatccaaggctgggggcttcagtgcagt
gaaactccagaagctctgagtcccgtccctgggggaccctcactctcgga
ccacagcctgtggtcagcttacggggctgggtttggaggtggggctagat
gggatgcatgggagggtggggtcggtgccagcctcctggagatgacagcg
ctaggttgaggtcagatgcatgaggatagacaaagcagcaagccagattc
acaattcatgttcgggattgttcagctagctgatagatcagagaataggc
gtcagatcattgta
gaattcccctggtgcaggttttttcactaggcccagaggaatagcataat
caggtatttactaaagaactcctggtaggtttagcaatagactagcattg
catcagaacattcacctagctcctgtgtttagctgatcttttaaattaag
ggttgttcctattctcagtggtaaacacggcctggctcccgacatctttt
tatgtatgtattccttttttgttttgtgtcaatgtaacttggcggatgtg
ttcgcctggttttcttgtttttcttctgtattaaaagtctggtgttcgtt
tggacaaaatacattcagattcagcactcccccttgagtctgcatctgtc
tgtcaattctcgcagacccttgttcacctacaaccagaaacctgttcccc
acagataggagactcaatagaggttagtctgtggcagtgtaggaggagct
gagagttctacatcttcatccaaagtcagacaggagaagactggctctca
ggctgctgctaggaggaggatcttaaagctcacacccaaaaataacacac
ttccaaggccacacctcctaatagtgccactccctgagccaagcatttat
aaaccatcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156509099_156510059
seq2: B6Ng01-148L11.b_45_1000

seq1  GAATTCTGAGTTAAAGCAGACTGCCCTCCTCCAGGGCAAAGCCCCCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTAAAGCAGACTGCCCTCCTCCAGGGCAAAGCCCCCTCAC  50

seq1  ATTCTATGGGCAACCCCCCCCCTTGCCTCTACTTATGTTCCTGCCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGGGCAACCCCCCCCCTTGCCTCTACTTATGTTCCTGCCTTCCC  100

seq1  TGTTTCAACAGATCCTTGTCTCTTGGGGTTGTTCTCTGATCATGCCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAACAGATCCTTGTCTCTTGGGGTTGTTCTCTGATCATGCCAACA  150

seq1  TCTTTCTCCCTGTATTTTCTGCCCTGACATCAAAATGCTTCCCTTTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCCTGTATTTTCTGCCCTGACATCAAAATGCTTCCCTTTGGAA  200

seq1  TGTTTGCTGCTGAGCACTGTGCACCAGGTTCTGCTGAGGAGGAAGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTGCTGAGCACTGTGCACCAGGTTCTGCTGAGGAGGAAGGACAG  250

seq1  CCCGACTGTCCCTGCTATCAAGGGATGTCAGTCCATGACTTTAGAGTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTGTCCCTGCTATCAAGGGATGTCAGTCCATGACTTTAGAGTAGG  300

seq1  GCTTGAGTTTCCTTTCTTCCTCCCCCACCCCCCTTCCAGGATCTTTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTTTCCTTTCTTCCTCCCCCACCCCCCTTCCAGGATCTTTCTCC  350

seq1  ATGGCTCTCACTTGCCTGGAACTATGTATAGCAAGCTGGCTTCCAGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTCACTTGCCTGGAACTATGTATAGCAAGCTGGCTTCCAGCTCT  400

seq1  GAGATCCACGGGTCCCAACGGCTGGACCTAAAGGCTCACACCATCATGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCACGGGTCCCAACGGCTGGACCTAAAGGCTCACACCATCATGCC  450

seq1  TACAGAGCTCCCCTGTTTCTTCTTTGCTGTGACCTTGGGCAAATTGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCTCCCCTGTTTCTTCTTTGCTGTGACCTTGGGCAAATTGTTGG  500

seq1  GGATTTCCAGCCTTGTCTGTCCTGTGGGTTGCTACAAAGAGGCTCTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCCAGCCTTGTCTGTCCTGTGGGTTGCTACAAAGAGGCTCTAAGG  550

seq1  CTACATAATCACAGCCATGCCCATGCTTGGGTAGAGGATGCAGTCTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAATCACAGCCATGCCCATGCTTGGGTAGAGGATGCAGTCTGAGG  600

seq1  TTGGCCAGGGCTGGAGGAGACACCTGTCTGGGGAAAGGGGATAGCTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGGGCTGGAGGAGACACCTGTCTGGGGAAAGGGGATAGCTTACC  650

seq1  CTCAGGTGGGACTCCTGTGTGGGATCCAAGGCTGGGGGCTTCAGTGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGGGACTCCTGTGTGGGATCCAAGGCTGGGGGCTTCAGTGCAGT  700

seq1  GAAACTCCAGAAGCTCTGAGTCCCGTCCCTGGGGGACCCTCACTCTCGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCAGAAGCTCTGAGTCCCGTCCCTGGGGGACCCTCACTCTCGGA  750

seq1  CCACAGCCTGTGGTCAGCTTACGGGGCTGGGTTTGGAGGTGGGGCTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCTGTGGTCAGCTTACGGGGCTGGGTTTGGAGGTGGGGCTAGAT  800

seq1  GGGATGCATGGGAGGGTGGGGTCGGTGCCAGCCTCCTGGAAGATGACAGC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGATGCATGGGAGGGTGGGGTCGGTGCCAGCCTCCTGG-AGATGACAGC  849

seq1  GCTAGGTTGAGGCCAGAGGCAATGAGGATAGGAACAAAGCAGCAGGCCAG  900
      |||||||||||| |||| || ||||||||||  ||||||||||| |||||
seq2  GCTAGGTTGAGGTCAGATGC-ATGAGGATAG--ACAAAGCAGCAAGCCAG  896

seq1  ATTCAACAATCA-GGTCGGGAATGTCCAGCCTAGCTGATAGACCAGAGAA  949
      |||||  | ||| | |||||| ||| ||| |||||||||||| ||||| |
seq2  ATTCACAATTCATGTTCGGGATTGTTCAG-CTAGCTGATAGATCAGAG-A  944

seq1  AGAGCCGTCAGA  961
      | || |||||||
seq2  ATAGGCGTCAGA  956

seq1: chr4_120519572_120519745
seq2: B6Ng01-148L11.g_508_679 (reverse)

seq1  CTGTGATGGTTTGTATATGCTAGGCCCAGGGAGTGGCACTATTAGAAGGT  50
      |||||||||||| || ||||| ||| ||||||||||||||||||| ||||
seq2  CTGTGATGGTTTATAAATGCTTGGCTCAGGGAGTGGCACTATTAGGAGGT  50

seq1  GTGGCCCTGTTGCAGTAGATGTGTCA-CTGTGAATGTGGGCTTTAAGACC  99
      |||||| ||     | || ||||| |  | ||  |||| ||||||||| |
seq2  GTGGCCTTG-----GAAG-TGTGTTATTTTTGGGTGTGAGCTTTAAGATC  94

seq1  CTCATCCT---TGCTGCCTGGAAGTCAGTATTCTGCTAGAAGCTTTCAGA  146
      ||| ||||    || |||||  || |||| |||| ||    |  ||  ||
seq2  CTCCTCCTAGCAGCAGCCTGAGAGCCAGTCTTCTCCTGTCTGACTTTGGA  144

seq1  TGAAGACGTAGAACTCTCAGCTCCTCCT  174
      |||||| |||||||||||||||||||||
seq2  TGAAGATGTAGAACTCTCAGCTCCTCCT  172