BAC Information

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BAC

Clone NameB6Ng01-149A02
Chromosome2 (Build37)
Map Location 152,697,019 - 152,829,943
singlet/doubletdoublet
Overlap geneTpx2, Mylk2, Fkhl18, Dusp15, Ttll9
Upstream geneRspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1
Downstream genePdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149A02.bB6Ng01-149A02.g
ACCDH945461DH945462
length1,187864
definitionDH945461|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A02, 5' end.DH945462|Mus musculus domesticus DNA, BAC clone: B6Ng01-149A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,828,751 - 152,829,943)(152,697,019 - 152,697,731)
sequence
gaattcactaaggggcttgggcctctttctaagtaagcctatgcctgctg
ctcagtgattcttctacttccagggagccagaaggaaaagccaacttccg
tggtttccaccggagaggaggctcgccacagggttatttagtaaaaaact
gagatcacaccaaatgcccaacggtaggaagtcggcttgataaatgctgg
cacacacgtgggctgaaatgctctgtagctgtgctgtgctgtaaccactc
aggaaactaaaggccggaattcaggagttagggttcaggctggctggccc
atctctacaacagccttctgtggtctgtgcaagctttggagacaatttcc
tggtttgaggggcaatcacagaagctaccacatgccgtggtattgcgcat
gaacaacccgcctaacacatgcttcccatgggaggtcctctgtattcctg
aatggagggagggaagccacgtggaaagtgggactccaaacgccagtctg
gtgccagatttacaaaaaatatgaatatatgcattttttaaaactggaag
gaaacaccagattgttaatgatggttgtgtctggatgtgttttaaatttt
ccttctttagttttcaaatattctacaatgagtgtgaatttctataatcg
gggaattctttcacatttcacatactaccttgcagagtcctacagccttt
aacttttctcatgataatttgttctccacctgagtcttgaaatccccctc
cagaaactcagaaatttctcactataacaggcagggtcctaccaggagta
tccaaccgtttgatgttgtgaccagacattgtcatctacaaagttcacac
ttgagaagtgagcaaaaagttacacacacacacactgaataaaaaatctc
ataactgttttaagtgagtatacgattttgtgttgggccacattcattgc
ccccttagctgcattcggttcccgggctgcagttggacatgacacctgta
gatactactcatctttatgttatggatgagaacagagaaggtcaagttgc
tcacccaagttccaccagctggttatgcttgctctgccaagctggatcac
cactgctcgtgcaagcgcccagcccccctccacttctatgatgtttcctc
tcccactcacttctggtctgctcacgaacctaggtga
gaattcagaggaggccatcggaatccctgaagctagagttacagatgact
gaaccacaatgtgggtgccaagaattgaactcagatcctcccaaagaaca
acaaacctacccaaccgctgagccatctcttcagccccatatatgatcta
atcaaatctatctcctatcctctcccttctgacttctcctctgtccctcc
catcattattgcaattgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgt
gtggtttaccatgtcttaagacagggtttctctgtgtagccctggctgtc
caggaactctctttgtagaccaggctggccttgaactcagatccacctgc
ttctgcctctcaagtgctgggattaagggcatcagtgtaggaccatctac
tggagcatccctgtagaaaactgactttcactctcccaacaaccattggt
tgccaatagttccttagctagggaaggttcttcatgacccattttcccat
ccatgttgggattttgtgtggcttgatctttgtctcaatctctggtgcat
aaaatcctagctactagaagttcatgtgctctgacatagctggataaatg
ctggctcactatcgtcttttcactacccatggctctctccgccctcttat
tctctgatgatccctgggccttagaggaagtggtgtgatgccccatttag
atctgaacaatctacaatctcttatgctctacacaatgatcagttttaac
tctctgtgttatttgtcacctactgcaaaaagaacctctctgagtttgta
ggtgaggcagtaacctatggatataaagatcaatagagggcaattttatc
caacgtccttttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_152828751_152829943
seq2: B6Ng01-149A02.b_46_1232 (reverse)

seq1  TCACCTAGGTACGTTGAGCCAGACAGGAAGTGAGTGGGAGA-GAAACATC  49
      |||||||||| || |||| |||||  ||||||||||||||| ||||||||
seq2  TCACCTAGGTTCG-TGAG-CAGACCAGAAGTGAGTGGGAGAGGAAACATC  48

seq1  ATAGGAAGTGGAGGGGGGCTGGGGCCGCTTGGCAGAGCAGT-GTGATCCA  98
      ||| |||||||||||||||||||  ||||||   ||||||| ||||||||
seq2  ATA-GAAGTGGAGGGGGGCTGGG--CGCTTGCACGAGCAGTGGTGATCCA  95

seq1  GCCCTTGGCAGAGCAAGCAT-ACCAGCT-GTGTGACTTGGGTGAGCAACT  146
      |  ||||||||||||||||| ||||||| |||  ||||||||||||||||
seq2  G--CTTGGCAGAGCAAGCATAACCAGCTGGTGGAACTTGGGTGAGCAACT  143

seq1  TGACC-TCTCTGTTCTTCATCCATAACATAAAGATGAGTAGTATCTTACA  195
      ||||| ||||||||| ||||||||||||||||||||||||||||| ||||
seq2  TGACCTTCTCTGTTC-TCATCCATAACATAAAGATGAGTAGTATC-TACA  191

seq1  GGTGTCATGTCCAACCTGCAGCCTGGGAACCGAATGCAGCTAAGGGTGGC  245
      |||||||||||||| |||||||| |||||||||||||||||||||| |||
seq2  GGTGTCATGTCCAA-CTGCAGCCCGGGAACCGAATGCAGCTAAGGG-GGC  239

seq1  AATGAATGTGGCCCAACACAAAATCGTATACTCACTTAAAACAGTTATGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGTGGCCCAACACAAAATCGTATACTCACTTAAAACAGTTATGA  289

seq1  GATTTTTTATTCAGTGTGTGTGTGTGTAACTTTTTGCTCACTTCTCAAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTATTCAGTGTGTGTGTGTGTAACTTTTTGCTCACTTCTCAAGT  339

seq1  GTGAACTTTGTAGATGACAATGTCTGGTCACAACATCAAACGGTTGGATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTTGTAGATGACAATGTCTGGTCACAACATCAAACGGTTGGATA  389

seq1  CTCCTGGTAGGACCCTGCCTGTTATAGTGAGAAATTTCTGAGTTTCTGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTAGGACCCTGCCTGTTATAGTGAGAAATTTCTGAGTTTCTGGA  439

seq1  GGGGGATTTCAAGACTCAGGTGGAGAACAAATTATCATGAGAAAAGTTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATTTCAAGACTCAGGTGGAGAACAAATTATCATGAGAAAAGTTAA  489

seq1  AGGCTGTAGGACTCTGCAAGGTAGTATGTGAAATGTGAAAGAATTCCCCG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTAGGACTCTGCAAGGTAGTATGTGAAATGTGAAAGAATTCCCCG  539

seq1  ATTATAGAAATTCACACTCATTGTAGAATATTTGAAAACTAAAGAAGGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGAAATTCACACTCATTGTAGAATATTTGAAAACTAAAGAAGGAA  589

seq1  AATTTAAAACACATCCAGACACAACCATCATTAACAATCTGGTGTTTCCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACACATCCAGACACAACCATCATTAACAATCTGGTGTTTCCT  639

seq1  TCCAGTTTTAAAAAATGCATATATTCATATTTTTTGTAAATCTGGCACCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTAAAAAATGCATATATTCATATTTTTTGTAAATCTGGCACCA  689

seq1  GACTGGCGTTTGGAGTCCCACTTTCCACGTGGCTTCCCTCCCTCCATTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCGTTTGGAGTCCCACTTTCCACGTGGCTTCCCTCCCTCCATTCA  739

seq1  GGAATACAGAGGACCTCCCATGGGAAGCATGTGTTAGGCGGGTTGTTCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACAGAGGACCTCCCATGGGAAGCATGTGTTAGGCGGGTTGTTCAT  789

seq1  GCGCAATACCACGGCATGTGGTAGCTTCTGTGATTGCCCCTCAAACCAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAATACCACGGCATGTGGTAGCTTCTGTGATTGCCCCTCAAACCAGG  839

seq1  AAATTGTCTCCAAAGCTTGCACAGACCACAGAAGGCTGTTGTAGAGATGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTCTCCAAAGCTTGCACAGACCACAGAAGGCTGTTGTAGAGATGG  889

seq1  GCCAGCCAGCCTGAACCCTAACTCCTGAATTCCGGCCTTTAGTTTCCTGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAGCCTGAACCCTAACTCCTGAATTCCGGCCTTTAGTTTCCTGA  939

seq1  GTGGTTACAGCACAGCACAGCTACAGAGCATTTCAGCCCACGTGTGTGCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTACAGCACAGCACAGCTACAGAGCATTTCAGCCCACGTGTGTGCC  989

seq1  AGCATTTATCAAGCCGACTTCCTACCGTTGGGCATTTGGTGTGATCTCAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTATCAAGCCGACTTCCTACCGTTGGGCATTTGGTGTGATCTCAG  1039

seq1  TTTTTTACTAAATAACCCTGTGGCGAGCCTCCTCTCCGGTGGAAACCACG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACTAAATAACCCTGTGGCGAGCCTCCTCTCCGGTGGAAACCACG  1089

seq1  GAAGTTGGCTTTTCCTTCTGGCTCCCTGGAAGTAGAAGAATCACTGAGCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGCTTTTCCTTCTGGCTCCCTGGAAGTAGAAGAATCACTGAGCA  1139

seq1  GCAGGCATAGGCTTACTTAGAAAGAGGCCCAAGCCCCTTAGTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATAGGCTTACTTAGAAAGAGGCCCAAGCCCCTTAGTGAATTC  1187

seq1: chr2_152697019_152697731
seq2: B6Ng01-149A02.g_66_778

seq1  GAATTCAGAGGAGGCCATCGGAATCCCTGAAGCTAGAGTTACAGATGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGAGGCCATCGGAATCCCTGAAGCTAGAGTTACAGATGACT  50

seq1  GAACCACAATGTGGGTGCCAAGAATTGAACTCAGATCCTCCCAAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACAATGTGGGTGCCAAGAATTGAACTCAGATCCTCCCAAAGAACA  100

seq1  ACAAACCTACCCAACCGCTGAGCCATCTCTTCAGCCCCATATATGATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTACCCAACCGCTGAGCCATCTCTTCAGCCCCATATATGATCTA  150

seq1  ATCAAATCTATCTCCTATCCTCTCCCTTCTGACTTCTCCTCTGTCCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCTATCTCCTATCCTCTCCCTTCTGACTTCTCCTCTGTCCCTCC  200

seq1  CATCATTATTGCAATTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTATTGCAATTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGT  250

seq1  GTGGTTTACCATGTCTTAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTACCATGTCTTAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC  300

seq1  CAGGAACTCTCTTTGTAGACCAGGCTGGCCTTGAACTCAGATCCACCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTCTCTTTGTAGACCAGGCTGGCCTTGAACTCAGATCCACCTGC  350

seq1  TTCTGCCTCTCAAGTGCTGGGATTAAGGGCATCAGTGTAGGACCATCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTCTCAAGTGCTGGGATTAAGGGCATCAGTGTAGGACCATCTAC  400

seq1  TGGAGCATCCCTGTAGAAAACTGACTTTCACTCTCCCAACAACCATTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATCCCTGTAGAAAACTGACTTTCACTCTCCCAACAACCATTGGT  450

seq1  TGCCAATAGTTCCTTAGCTAGGGAAGGTTCTTCATGACCCATTTTCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATAGTTCCTTAGCTAGGGAAGGTTCTTCATGACCCATTTTCCCAT  500

seq1  CCATGTTGGGATTTTGTGTGGCTTGATCTTTGTCTCAATCTCTGGTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGGGATTTTGTGTGGCTTGATCTTTGTCTCAATCTCTGGTGCAT  550

seq1  AAAATCCTAGCTACTAGAAGTTCATGTGCTCTGACATAGCTGGATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTAGCTACTAGAAGTTCATGTGCTCTGACATAGCTGGATAAATG  600

seq1  CTGGCTCACTATCGTCTTTTCACTACCCATGGCTCTCTCCGCCCTCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCACTATCGTCTTTTCACTACCCATGGCTCTCTCCGCCCTCTTAT  650

seq1  TCTCTGATGATCCCTGGGCCTTAGAGGAAGTGGTGTGATGCCCCATTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATGATCCCTGGGCCTTAGAGGAAGTGGTGTGATGCCCCATTTAG  700

seq1  ATCTGAACAATCT  713
      |||||||||||||
seq2  ATCTGAACAATCT  713