BAC Information

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BAC

Clone NameB6Ng01-149E11
Chromosome2 (Build37)
Map Location 153,965,378 - 154,119,111
singlet/doubletdoublet
Overlap genePlunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik
Upstream geneHck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik
Downstream geneOTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149E11.bB6Ng01-149E11.g
ACCDH945661DH945662
length1,117192
definitionDH945661|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E11, 5' end.DH945662|Mus musculus domesticus DNA, BAC clone: B6Ng01-149E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,965,378 - 153,966,496)(154,118,920 - 154,119,111)
sequence
gaattcactgttatctatttgttacctactcaaaattgaatgctgatttc
catcctaatccatcacaagttgaagataaatgtcacacatattaataata
gtaatatgggctagagagatggctccatggttaagagtgcttactactct
tccagaggtcccagtttcagatcccagcacccacagtatgtggcccacaa
ctgcgtgaagttccagctctaggagaatccggtgccttcttccagcttcc
atgggcatacgtgtggtatatatacacatacacaaataaaaataaatctt
taaaaataagtaagcactcgacaagtcttccacatctgattaaatgcctc
accagcaaccccgtgacatacaaaactgtcacccagtttacacatgaacg
ttctgaaagaagaagctatttgcctaaatcacacagaaaggaactggtct
cgtcagccctgctaacattaatcgtatgcccattaatcatatgcagacag
gtagatcacaaagctcacactcttaattgtgaacccccaccccaaggtgt
ccccttcttccctcccttctaagacctcccctcgacttcccttccaccca
aggggaatatgatgaaatcggttcagtggaactgagaagctcaaacaagg
aagtgtcaactgctcagagatgagaagagggccagagaacttcttgtctc
catctttcaattcaaactccctaatccgaaatgcttcaccggggatttgc
aaccctagacaccatgatcctgaacattccacttgatagcctttggctta
cagggttcttcctgctcttgagtcaaagagcaaacacaggagggctaggc
cacaaggctgtctgcttccttgggggatagcgtttgtctgcatccctctt
ggcactatctgggttgtcttaaagggctccatcaagtgcctctttgtgtt
ttccattcctcttggcacctttctgggttgtctaagggctccatcaagat
gcttctttgtgttttccaattctgtcttcatattaagattccagagccag
agacccagccatcacactttgctcccagaaaggcctggttgatacagagc
cctctgatgctcttggg
ctgatctttccaagacttttatcatgaatgggtgttggatcttgttgaat
ggaagcaagctttattaaagaattacatgaaagtgagaaactccagagaa
tggaaggggtttctgagaaaggaaagaggctgctgtactttcttatctag
gatgtggttttttttttgtgtgtgtgtgtatgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_153965378_153966496
seq2: B6Ng01-149E11.b_47_1163

seq1  GAATTCACTGTTATCTATTTGTTACCTACTCAAAATTGAATGCTGATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTATCTATTTGTTACCTACTCAAAATTGAATGCTGATTTC  50

seq1  CATCCTAATCCATCACAAGTTGAAGATAAATGTCACACATATTAATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAATCCATCACAAGTTGAAGATAAATGTCACACATATTAATAATA  100

seq1  GTAATATGGGCTAGAGAGATGGCTCCATGGTTAAGAGTGCTTACTACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGGGCTAGAGAGATGGCTCCATGGTTAAGAGTGCTTACTACTCT  150

seq1  TCCAGAGGTCCCAGTTTCAGATCCCAGCACCCACAGTATGTGGCCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGTCCCAGTTTCAGATCCCAGCACCCACAGTATGTGGCCCACAA  200

seq1  CTGCGTGAAGTTCCAGCTCTAGGAGAATCCGGTGCCTTCTTCCAGCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGAAGTTCCAGCTCTAGGAGAATCCGGTGCCTTCTTCCAGCTTCC  250

seq1  ATGGGCATACGTGTGGTATATATACACATACACAAATAAAAATAAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCATACGTGTGGTATATATACACATACACAAATAAAAATAAATCTT  300

seq1  TAAAAATAAGTAAGCACTCGACAAGTCTTCCACATCTGATTAAATGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGTAAGCACTCGACAAGTCTTCCACATCTGATTAAATGCCTC  350

seq1  ACCAGCAACCCCGTGACATACAAAACTGTCACCCAGTTTACACATGAACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAACCCCGTGACATACAAAACTGTCACCCAGTTTACACATGAACG  400

seq1  TTCTGAAAGAAGAAGCTATTTGCCTAAATCACACAGAAAGGAACTGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGAAGAAGCTATTTGCCTAAATCACACAGAAAGGAACTGGTCT  450

seq1  CGTCAGCCCTGCTAACATTAATCGTATGCCCATTAATCATATGCAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGCCCTGCTAACATTAATCGTATGCCCATTAATCATATGCAGACAG  500

seq1  GTAGATCACAAAGCTCACACTCTTAATTGTGAACCCCCACCCCAAGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCACAAAGCTCACACTCTTAATTGTGAACCCCCACCCCAAGGTGT  550

seq1  CCCCTTCTTCCCTCCCTTCTAAGACCTCCCCTCGACTTCCCTTCCACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTTCCCTCCCTTCTAAGACCTCCCCTCGACTTCCCTTCCACCCA  600

seq1  AGGGGAATATGATGAAATCGGTTCAGTGGAACTGAGAAGCTCAAACAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATATGATGAAATCGGTTCAGTGGAACTGAGAAGCTCAAACAAGG  650

seq1  AAGTGTCAACTGCTCAGAGATGAGAAGAGGGCCAGAGAACTTCTTGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCAACTGCTCAGAGATGAGAAGAGGGCCAGAGAACTTCTTGTCTC  700

seq1  CATCTTTCAATTCAAACTCCCTAATCCGAAATGCTTCACCGGGGATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCAATTCAAACTCCCTAATCCGAAATGCTTCACCGGGGATTTGC  750

seq1  AACCCTAGACACCATGATCCTGAACATTCCACTTGATAGCCTTTGGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGACACCATGATCCTGAACATTCCACTTGATAGCCTTTGGCTTA  800

seq1  CAGGGTTCTTCCTGCTCTTGAGTCAAAGAGCAAACACAGGAGGGCTAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCTTCCTGCTCTTGAGTCAAAGAGCAAACACAGGAGGGCTAGGC  850

seq1  CACAAGGCTGTCTGCTTCCTTGGGGGATAGCGTTTGTCTGCATTCCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACAAGGCTGTCTGCTTCCTTGGGGGATAGCGTTTGTCTGCATCCCTCTT  900

seq1  GGCACTATCTGGGTTGTCTT-AAGGGCTCCATCAAGATGCCTCTTTGTGT  949
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  GGCACTATCTGGGTTGTCTTAAAGGGCTCCATCAAG-TGCCTCTTTGTGT  949

seq1  TTTCCAATTCCTCTTGGCACC-TTCTGGGTTGTCTTAAGGGCTCCATCAA  998
      ||||| ||||||||||||||| |||||||||||| |||||||||||||||
seq2  TTTCC-ATTCCTCTTGGCACCTTTCTGGGTTGTC-TAAGGGCTCCATCAA  997

seq1  GATGCTTCTTTGTGTTTTCCAATTCTGTCTTCATATTAAGATTCACAGAG  1048
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATGCTTCTTTGTGTTTTCCAATTCTGTCTTCATATTAAGATTC-CAGAG  1046

seq1  CCAGAGACCCAGCCATCACAC-TTGCTCCCAGAAGAGCTTGTTTGGATAC  1097
      ||||||||||||||||||||| ||||||||||||  || || || |||||
seq2  CCAGAGACCCAGCCATCACACTTTGCTCCCAGAAAGGCCTGGTT-GATAC  1095

seq1  AGAGCCCTCTGATGCTCTTGGG  1119
      ||||||||||||||||||||||
seq2  AGAGCCCTCTGATGCTCTTGGG  1117

seq1: chr2_154118920_154119111
seq2: B6Ng01-149E11.g_72_263 (reverse)

seq1  CACACACACACATACACACACACACAAAAAAAAAACCACATCCTAGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACACACACACAAAAAAAAAACCACATCCTAGATAA  50

seq1  GAAAGTACAGCAGCCTCTTTCCTTTCTCAGAAACCCCTTCCATTCTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACAGCAGCCTCTTTCCTTTCTCAGAAACCCCTTCCATTCTCTGG  100

seq1  AGTTTCTCACTTTCATGTAATTCTTTAATAAAGCTTGCTTCCATTCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCACTTTCATGTAATTCTTTAATAAAGCTTGCTTCCATTCAACA  150

seq1  AGATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAG  192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAACACCCATTCATGATAAAAGTCTTGGAAAGATCAG  192