BAC Information

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BAC

Clone NameB6Ng01-149F08
Chromosome2 (Build37)
Map Location 7,358,596 - 7,479,718
singlet/doubletdoublet
Overlap geneLOC100040648
Upstream geneUsp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149F08.bB6Ng01-149F08.g
ACCDH945699DH945700
length1,0321,064
definitionDH945699|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F08, 5' end.DH945700|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,358,596 - 7,359,620)(7,478,655 - 7,479,718)
sequence
gaattcacttctgggcacactgtgggagataatcttgatctgtaaatgat
gtgggagggcccattctactgtaagcagtgggcagattgtccagggatga
aaggaaagctaacatggctagagaaatcgttcagtagttaagagtgctca
ctctttcagaggttctgggtttagtttccagtatgtatgaaccatcatgg
ttcacaaccatctttaactctttccaggcaatccaataccttctgagttc
caaaaacaccagactttcatatggttcatatacatgcatggcgacaaaac
agctatacaaatgaaccaatctgattttttttccaaaaactaactgaata
aaaccttgatagcaagtcaataagcagcctccctctatggtttagcctca
gtgcctggcctgtctttgcttggttgttgtaatgtacaatgatctattta
ctctcctaagctgattttggtcacagtgttttatcacaacaaaaatgaaa
ctagaatagtacatttatatacttgtttattgtgtatgtatgtattgtgt
atgtatgtatgcttatatgtgggggcacacatgcatgcatagcatatgac
tggagggccagaggacaactcaaagaagctagttctcttcttctattata
ttctatcatatgagtccttcagagtaacccaggactttagatattgtgcc
caatgcctttacctttttgagcatctcactggccacagtcgatttcattt
gtttgccaaatcatacttggaaacaaacctctcttagtaaagtttaaatt
tgacttggttcagtaattgaacttgaaaggactgaattggtgttctacaa
cactactccctgaaataaacttcctctaccttcaggaggtcatctatgta
ttcttgcaagagtatcatgatgtatcctctggactgttggcattgcctcc
cagaacaatggtgtggaattgactgcaccttaagttccaaccactcctcc
agaactttgcaattgtccctatactgtggccc

gaattcagtttaccagcattggtgacaaacttttttatcactaaaatatc
tcaccaatctcatgagaatagtttttaaaaaatagagcttccaggaacaa
caacaacgtaaaactttgattgctggattaaataaaaggcaggcacaaat
gtctaaagaatcaatacattgaagactatgacataagaaaaagatcaaca
tcaatacaagaggtcatgatgttgatgttgggagcaagatggtgatggag
acactgagggggaatgagaaggcagtgatgaattgacattatcaatacat
attaatatatgtctgaaatttttctaaacagaaaacatttattcttaaaa
atctagagaaaagatgagtaaataacaaaaagagcttaaaagtgaagaaa
agattaaaaatacatttattaaatatctaaccattatttcagataaaaac
tttaaaaaaaaagtacagacaaagcagaattggaaatatgagagctcggt
gtttacctgaaagtgttcataattgtgaatcttcaaatcctggattccta
atcaattccatgcaagagttaaagtaaaaaaagaaataacagaatcaagg
tataaaaaagaatggcaacaaacacattggagaactagtgaggaaaatca
taattcttattatcgatccaaaataatggaattttagaggtgaaccctga
aattccaaggaatattgtcacataaactaagacaaaagtcagtgcagcta
tggcacttaccagctcctgttcatcagtttgaaatgaaatgactaatagt
atgttctcaactatgtcaaaaattgctcaaagacacagtttctaacttcc
caagcatgagaaaggaagggagatgaaatgttctttgtgaatactgtggg
agaaaataatgaattcacaagccaagagaatggagtcagaagtgtgtctt
ggacctgtgacttttatcctgggaagcagaagtgagactgcattacacaa
tgtttgctaaataaaaaaaaatccatcaaacaacaacactaaaagcaaag
aaagcctaacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7358596_7359620
seq2: B6Ng01-149F08.b_63_1079

seq1  CACACTGTGGGAGATAATCTTGATCTGTAAATGATGTGGGAGGGCCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGGGAGATAATCTTGATCTGTAAATGATGTGGGAGGGCCCATT  50

seq1  CTACTGTAAGCAGTGGGCAGATTGTCCAGGGATGAAAGGAAAGCTAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTAAGCAGTGGGCAGATTGTCCAGGGATGAAAGGAAAGCTAACAT  100

seq1  GGCTAGAGAAATCGTTCAGTAGTTAAGAGTGCTCACTCTTTCAGAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGAAATCGTTCAGTAGTTAAGAGTGCTCACTCTTTCAGAGGTTC  150

seq1  TGGGTTTAGTTTCCAGTATGTATGAACCATCATGGTTCACAACCATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTAGTTTCCAGTATGTATGAACCATCATGGTTCACAACCATCTTT  200

seq1  AACTCTTTCCAGGCAATCCAATACCTTCTGAGTTCCAAAAACACCAGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCCAGGCAATCCAATACCTTCTGAGTTCCAAAAACACCAGACT  250

seq1  TTCATATGGTTCATATACATGCATGGCGACAAAACAGCTATACAAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGGTTCATATACATGCATGGCGACAAAACAGCTATACAAATGAA  300

seq1  CCAATCTGATTTTTTTTCCAAAAACTAACTGAATAAAACCTTGATAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTGATTTTTTTTCCAAAAACTAACTGAATAAAACCTTGATAGCAA  350

seq1  GTCAATAAGCAGCCTCCCTCTATGGTTTAGCCTCAGTGCCTGGCCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAGCAGCCTCCCTCTATGGTTTAGCCTCAGTGCCTGGCCTGTCT  400

seq1  TTGCTTGGTTGTTGTAATGTACAATGATCTATTTACTCTCCTAAGCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGGTTGTTGTAATGTACAATGATCTATTTACTCTCCTAAGCTGAT  450

seq1  TTTGGTCACAGTGTTTTATCACAACAAAAATGAAACTAGAATAGTACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCACAGTGTTTTATCACAACAAAAATGAAACTAGAATAGTACATT  500

seq1  TATATACTTGTTTATTGTGTATGTATGTATTGTGTATGTATGTATGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTTGTTTATTGTGTATGTATGTATTGTGTATGTATGTATGCTTA  550

seq1  TATGTGGGGGCACACATGCATGCATAGCATATGACTGGAGGGCCAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGGGCACACATGCATGCATAGCATATGACTGGAGGGCCAGAGGA  600

seq1  CAACTCAAAGAAGCTAGTTCTCTTCTTCTATTATATTCTATCATATGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAAAGAAGCTAGTTCTCTTCTTCTATTATATTCTATCATATGAGT  650

seq1  CCTTCAGAGTAACCCAGGACTTTAGATATTGTGCCCAATGCCTTTACC-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTTCAGAGTAACCCAGGACTTTAGATATTGTGCCCAATGCCTTTACCTT  700

seq1  TTTGAGCATCTCACTGGCCACAGTCGATTTCATTTGTTTGCCAAATCATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCATCTCACTGGCCACAGTCGATTTCATTTGTTTGCCAAATCATA  750

seq1  CTTGGAAACAAACCTCTCTTAGT-AAGTTTAAATTTGACTTGGTTCAGTA  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTGGAAACAAACCTCTCTTAGTAAAGTTTAAATTTGACTTGGTTCAGTA  800

seq1  ATTGAACTTGAAAGGACTGAA-TGGTGTTCTACAACACTACTCCCTGAAA  847
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTGAACTTGAAAGGACTGAATTGGTGTTCTACAACACTACTCCCTGAAA  850

seq1  TAAACTTCCTCTACCTTCAGGAGGTCATCTATGTATTCTTGCAAGAGTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCCTCTACCTTCAGGAGGTCATCTATGTATTCTTGCAAGAGTAT  900

seq1  CATGATGTAACCTCTGAACTGTTGGCATTGCCTCCCAGAACAATGGGTGG  947
      ||||||||| |||||| ||||||||||||||||||||||||||| |||| 
seq2  CATGATGTATCCTCTGGACTGTTGGCATTGCCTCCCAGAACAAT-GGTGT  949

seq1  TGAATGTGACTGCACCCTTAAGTTCGCAACCACTCCTCCCAGACCTTTTT  997
       |||| |||||||| |||||||||| ||||||||||| ||||| |  |||
seq2  GGAAT-TGACTGCA-CCTTAAGTTC-CAACCACTCCT-CCAGAAC--TTT  993

seq1  GCAATTGTTCCCTAATTACGTGTGGCCC  1025
      ||||||| ||||||  ||| ||||||||
seq2  GCAATTG-TCCCTA--TAC-TGTGGCCC  1017


seq1: chr2_7478655_7479718
seq2: B6Ng01-149F08.g_68_1131 (reverse)

seq1  TGTTGTTAGGCTTTCTTTTGCTTTT-TTGTTGTTTGTTGGTTTGATGGAT  49
      ||||||||||||||| |||||||||  |||||||     |||||||||| 
seq2  TGTTGTTAGGCTTTC-TTTGCTTTTAGTGTTGTT-----GTTTGATGGA-  43

seq1  TTTTTTTTTATTTAGCATACATTGTGTTATGCAGTCTCAC-TCTGCTTCC  98
      ||||||||||||||||| ||||||||| |||||||||||| |||||||||
seq2  TTTTTTTTTATTTAGCAAACATTGTGTAATGCAGTCTCACTTCTGCTTCC  93

seq1  CAGGAT-AAAGTCACAGGTCC-AGGCACACTTCTGACTCCCTTCTC-TGG  145
      |||||| |||||||||||||| || ||||||||||||||| ||||| |||
seq2  CAGGATAAAAGTCACAGGTCCAAGACACACTTCTGACTCCATTCTCTTGG  143

seq1  CTTGTGAATTC-TTATTTTCTCCCACAGTATTCACAAAGAACATTTCATC  194
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAATTCATTATTTTCTCCCACAGTATTCACAAAGAACATTTCATC  193

seq1  TCCCTTCC-TTCTCATGCTTGGGAAGTTAGAAACTGTGTCTTTGAGCAAT  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTTTCTCATGCTTGGGAAGTTAGAAACTGTGTCTTTGAGCAAT  243

seq1  TTTTGACATAGTTGAGAACATACTATTAGTCATTTCATTTCAAACTGATG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACATAGTTGAGAACATACTATTAGTCATTTCATTTCAAACTGATG  293

seq1  AACAGGAGCTGGTAAGTGCCATAGCTGCACTGACTTTTGTCTTAGTTTAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGCTGGTAAGTGCCATAGCTGCACTGACTTTTGTCTTAGTTTAT  343

seq1  GTGACAATATTCCTTGGAATTTCAGGGTTCACCTCTAAAATTCCATTATT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATATTCCTTGGAATTTCAGGGTTCACCTCTAAAATTCCATTATT  393

seq1  TTGGATCGATAATAAGAATTATGATTTTCCTCACTAGTTCTCCAATGTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCGATAATAAGAATTATGATTTTCCTCACTAGTTCTCCAATGTGT  443

seq1  TTGTTGCCATTCTTTTTTATACCTTGATTCTGTTATTTCTTTTTTTACTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCATTCTTTTTTATACCTTGATTCTGTTATTTCTTTTTTTACTT  493

seq1  TAACTCTTGCATGGAATTGATTAGGAATCCAGGATTTGAAGATTCACAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTGCATGGAATTGATTAGGAATCCAGGATTTGAAGATTCACAAT  543

seq1  TATGAACACTTTCAGGTAAACACCGAGCTCTCATATTTCCAATTCTGCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACACTTTCAGGTAAACACCGAGCTCTCATATTTCCAATTCTGCTT  593

seq1  TGTCTGTACTTTTTTTTTAAAGTTTTTATCTGAAATAATGGTTAGATATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTACTTTTTTTTTAAAGTTTTTATCTGAAATAATGGTTAGATATT  643

seq1  TAATAAATGTATTTTTAATCTTTTCTTCACTTTTAAGCTCTTTTTGTTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTATTTTTAATCTTTTCTTCACTTTTAAGCTCTTTTTGTTAT  693

seq1  TTACTCATCTTTTCTCTAGATTTTTAAGAATAAATGTTTTCTGTTTAGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATCTTTTCTCTAGATTTTTAAGAATAAATGTTTTCTGTTTAGAA  743

seq1  AAATTTCAGACATATATTAATATGTATTGATAATGTCAATTCATCACTGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAGACATATATTAATATGTATTGATAATGTCAATTCATCACTGC  793

seq1  CTTCTCATTCCCCCTCAGTGTCTCCATCACCATCTTGCTCCCAACATCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATTCCCCCTCAGTGTCTCCATCACCATCTTGCTCCCAACATCAA  843

seq1  CATCATGACCTCTTGTATTGATGTTGATCTTTTTCTTATGTCATAGTCTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGACCTCTTGTATTGATGTTGATCTTTTTCTTATGTCATAGTCTT  893

seq1  CAATGTATTGATTCTTTAGACATTTGTGCCTGCCTTTTATTTAATCCAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTATTGATTCTTTAGACATTTGTGCCTGCCTTTTATTTAATCCAGC  943

seq1  AATCAAAGTTTTACGTTGTTGTTGTTCCTGGAAGCTCTATTTTTTAAAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGTTTTACGTTGTTGTTGTTCCTGGAAGCTCTATTTTTTAAAAA  993

seq1  CTATTCTCATGAGATTGGTGAGATATTTTAGTGATAAAAAAGTTTGTCAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCATGAGATTGGTGAGATATTTTAGTGATAAAAAAGTTTGTCAC  1043

seq1  CAATGCTGGTAAACTGAATTC  1064
      |||||||||||||||||||||
seq2  CAATGCTGGTAAACTGAATTC  1064


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