BAC Information

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BAC

Clone NameB6Ng01-149F13
Chromosome2 (Build37)
Map Location 66,613,148 - 66,614,121
singlet/doubletsinglet
Overlap geneScn7a
Upstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a
Downstream geneLOC383707, LOC100039540, Gm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149F13.bB6Ng01-149F13.g
ACCDH945709DH945710
length1,038974
definitionDH945709|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F13, 5' end.DH945710|Mus musculus domesticus DNA, BAC clone: B6Ng01-149F13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctaaaataagtatttaatcttagagttgtccacttttacaca
gaagttatatacttggtatcaggtactaatctcatacttttaactctcac
ccactttcctacatgaataatattacagtagtatggtgctttcattacaa
agaggaaacacacattatcattaaccaaactataggtttaactttgatct
cagtagttgttacattattttccacaatcctattgatatcaatgatcaca
tggagagttttaaatatggtcaactcttcatgtctccttaacttcatctg
atctagattaatattttttctttctgtaaatagtaattgatgattttaag
gagttggaatcaattgctttatagagtgtcactcaatttggaatattata
tgttccttctgagatgactagtgtcataaattttttcagaataatacctc
agaagtagtgtactcttttaaaatcctatcagtagtacatattatcaaca
taatttgtttacttggttaacaggggattacccaagatattttcaaagtg
aatattttttctctttttcaacaatatgacatggaagaaagctgtcaaat
acagtccacttgagaaggcagaagcatgtttaggctgtattcgctaagga
ggctgtatctaaagcaattatttttgacatcctttaaggagcacgtatca
cctcaatgtcatgcactttaggataaagatgggcatcctatctcctttga
gatcgcaaacatgtgaaataaaaatgcaaattggattttaaagatttgca
gtgatagctcatcagagaatgaggagaaaggagactattaccttacatca
cagttttcaacatccaaatatataccaccgatggcttttatgtattttta
cttaaagaaaaaattattcatatgtcaaaacacttagtaatactgaatat
caggtcatttctttatgaaaaatgtcaacattcactcatttgcctgttcc
atcagactggggtgcatcataaaccaactactcaattt
gaattccaacatagataatgaattacatggccatctaactacttagccca
tgccaggctccactgaacacagctcactaggttaggccagctttagtaag
attctctgcccacaactgatcttccatcttagaaataatggaggacatga
aaaaaaaatggaaagttatggtcttttttttcttatccctattcccaata
ccccatctgtactggctagttttgtgttaatttgacagctggagttatca
cagagaaaggagcttcagttgaggaaatgcctccatgagatccaactgta
aggcattttctcaattagtgatcaagggggaaaggtccctggtgggtggg
accatctctgagctggtaatcttggttctataagagagtaggctgagcaa
gccaggggaagaaagccagtaaagaacatccctccatgacttctgcatca
gctcctgctttctgacctgcttgagttccagtcctgacttcctttggtga
tgaacagcagtatgatatgaaagtgtaagccgaataaaccctttcttccc
caacttgcttcttggtcatgatgtttgtgcaggaatagaatccctgacta
agacacccatcctccccacatgaacaccttttcttagacagatatctaga
gtaaaaatattgcaatgatgcagccaacccacgcagcaaatcctccagag
atcttaggaaaccacccagtctttctttcatgtatgtttcctacttttag
ggtattttatttctattaaaatttaaataactaatcagcaggttttctga
aaccaggaggagtttatcatgaaactagtgttttagattagttttgacag
agaatataatagatatcatatgtacacatctgaatatagatatacatgtt
caaatttctcgtgaactccaaatgttttagctaaatataggatatagagg
acagagaaggggataaactgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_66613148_66614121
seq2: B6Ng01-149F13.g_69_1042

seq1  GAATTCCAACATAGATAATGAATTACATGGCCATCTAACTACTTAGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACATAGATAATGAATTACATGGCCATCTAACTACTTAGCCCA  50

seq1  TGCCAGGCTCCACTGAACACAGCTCACTAGGTTAGGCCAGCTTTAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCTCCACTGAACACAGCTCACTAGGTTAGGCCAGCTTTAGTAAG  100

seq1  ATTCTCTGCCCACAACTGATCTTCCATCTTAGAAATAATGGAGGACATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGCCCACAACTGATCTTCCATCTTAGAAATAATGGAGGACATGA  150

seq1  AAAAAAAATGGAAAGTTATGGTCTTTTTTTTCTTATCCCTATTCCCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATGGAAAGTTATGGTCTTTTTTTTCTTATCCCTATTCCCAATA  200

seq1  CCCCATCTGTACTGGCTAGTTTTGTGTTAATTTGACAGCTGGAGTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTGTACTGGCTAGTTTTGTGTTAATTTGACAGCTGGAGTTATCA  250

seq1  CAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTA  300

seq1  AGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGTCCCTGGTGGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGTCCCTGGTGGGTGGG  350

seq1  ACCATCTCTGAGCTGGTAATCTTGGTTCTATAAGAGAGTAGGCTGAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTGAGCTGGTAATCTTGGTTCTATAAGAGAGTAGGCTGAGCAA  400

seq1  GCCAGGGGAAGAAAGCCAGTAAAGAACATCCCTCCATGACTTCTGCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGAAGAAAGCCAGTAAAGAACATCCCTCCATGACTTCTGCATCA  450

seq1  GCTCCTGCTTTCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCTTTCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGA  500

seq1  TGAACAGCAGTATGATATGAAAGTGTAAGCCGAATAAACCCTTTCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGCAGTATGATATGAAAGTGTAAGCCGAATAAACCCTTTCTTCCC  550

seq1  CAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAATCCCTGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAATCCCTGACTA  600

seq1  AGACACCCATCCTCCCCACATGAACACCTTTTCTTAGACAGATATCTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCATCCTCCCCACATGAACACCTTTTCTTAGACAGATATCTAGA  650

seq1  GT-AAAATA-TGCAATGATGCAGCCAACCCACGCAGCAAATCCTCCAGAG  698
      || |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATATTGCAATGATGCAGCCAACCCACGCAGCAAATCCTCCAGAG  700

seq1  ATCTTAGGAAACCACCCAGTCTTTC-TTCATGTATG-TTCCTAC-TTTAG  745
      ||||||||||||||||||||||||| |||||||||| ||||||| |||||
seq2  ATCTTAGGAAACCACCCAGTCTTTCTTTCATGTATGTTTCCTACTTTTAG  750

seq1  GGTATTT--ATTCTATTAAAATTTAAATAACTAATCAGCAAGCTTTCTGA  793
      |||||||   |||||||||||||||||||||||||||||| | |||||||
seq2  GGTATTTTATTTCTATTAAAATTTAAATAACTAATCAGCAGGTTTTCTGA  800

seq1  AACCAGGAGGAGTTTATCAGGAAACAAGTG-TTTAGATTAGTTTTGACAG  842
      ||||||||||||||||||| ||||| |||| |||||||||||||||||||
seq2  AACCAGGAGGAGTTTATCATGAAACTAGTGTTTTAGATTAGTTTTGACAG  850

seq1  AGAATTATAATAGATATCATATGTACACATCTGAATATAGATATACATGT  892
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAA-TATAATAGATATCATATGTACACATCTGAATATAGATATACATGT  899

seq1  TCAAATTTCTCGTGAACTTCCAAAATGTTTTAGGCTAAAATATAAGGATA  942
      ||||||||||||||||||  | |||||||||| ||| |||||| ||||||
seq2  TCAAATTTCTCGTGAACT--CCAAATGTTTTA-GCT-AAATAT-AGGATA  944

seq1  TAGAGGACAGAGAAGGGGACTAAAACTGAAGA  974
      |||||||||||||||||||   ||||||||||
seq2  TAGAGGACAGAGAAGGGGA--TAAACTGAAGA  974