BAC Information

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BAC

Clone NameB6Ng01-149G01
Chromosome2 (Build37)
Map Location 43,975,954 - 44,164,270
singlet/doubletdoublet
Overlap geneArhgap15
Upstream geneLOC100041228, LOC100041245, Kynu
Downstream geneGtdc1, Zeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149G01.bB6Ng01-149G01.g
ACCDH945730DH945731
length1,1391,136
definitionDH945730|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G01, 5' end.DH945731|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,975,954 - 43,977,103)(44,163,110 - 44,164,270)
sequence
gaattctcagctttatccctcagccattatattatatgtttgataataat
tctttttctagttctctctgtgtgtctctgtctctgtctctctcctttct
gtatatctcattctgccccacattatcagagcaaaccttccttgctcact
ctgctctagtcaggagcagctctagcactcagtatgttcctgtttcctgg
gatagaactatgcatgtgggcatgcttttcctttaacttacatcaagaca
taaactataatttttctgttgctttggggttttgatttttaattttaaaa
tattgtctttcattcctggggacatccattccatttcatgtcctttattt
attcattgtatttctagcaaatcaaccactttgctcaaacatctgactaa
tctcttaggaaggcaaaaatactgagcacactttaagaaaagtgtgctga
gaactgagttaatgctgttggttctatttagttcataatctttatttata
agttgacatgtgattgtttctttcccaaccatattcatttgcatcatgtt
agataacttcaggtgtatttaagtaattacccaagcacaatgaatttcaa
agatttttgtcaaagaggaacatgtctttgaaaaaccatagcacttttgt
aaaatatgtcatttatattgagaaataaaaaaatactcaccagtcacaaa
acaaatacaggccatcagtcctgtgcttccacgttgtatttataaatact
aaaataagtgagttaaagaacatatttttaaacatttttctgaacttata
gataacagaataaccacattgccatgctgttactttaagaagatatttat
ctgagcatcagtgcgatgcagctttcagcagagacaagctcatctttgcc
acctctcactgttgggctgagaaaattgtacttggatttatacaccaggc
gtgggtctgtcgttacttgggcatgaagcactctcactgcttccacatat
gcactaatgtgctaaaatatcttataaatcttcttttcgtcagacttctt
tatgctcataattgaactgtggatcttacatggtgagctatgtcatgatt
taatattagcaaattatagccaactagccttcttttctt
gaattcaaagatgcaagcacttcaccttttagagtgccagaccatcatgg
gcatagtgggaccttttgagaattgtaagaaccggactattgcttgaatc
accaggacaaagtccaagactggaatagaagcaaaaggttaaaggaaaca
tacattaagtgcagggtccacttatgcctttcaagacgaacctaaagtct
tcagcacataacaaaacaaaacaaaacaaaacaaaacaaaacaaaacagt
agttcagataaaaggagagtgtccagagaagcttgtcagtattaaaagtg
acaggttccaacacagtaaattcataaatatgctatttatgaatattgag
aaatattttggtaaaacttttaaatgatgaatgtaaagcattttcttaca
acactactgaactcaaaacaggactaaataagtaaattcatacactttcc
taagacttttctcaccaaatccagcaaaacaaaagaaaacgaaacaccaa
agcaatatctaatgagtttagagggaaaattttgagtacgcaaaattatc
tacatactccaatatgccatttgtttgctaagtcatgagaaggacattct
catctatgcaaggtggattataaatagcacatctttctttaaagtaagct
tgaaacttatttgtctgcccatggaaggatctaaatttataactcaagaa
tagcgaccttacaggggaaactaagcatctacttagctcagatcccaaac
ccagggcaccatttgcattgccgctctttggcttctgttttgctcctggt
gtcagaaatggctggcagtgtctgcaaaataattgaggtgaaggtgtgga
agatgggcagccatctttcaaacaaggaccagtgctggttcattctggag
tttagtacaaacctctactgagacattgtactggaaagagactgcatcta
cttctcttcctctggtcaaacaaagctgtccagagagggcagctgacacc
cgtgctagattcctagtaagtatgtatcctataacactgttctgagaaat
gtagtgaagagtagttaaggtaggagatgaagatgagaacagtgacattt
atgaatcacaaggagtggaatgggcagaaagaatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43975954_43977103
seq2: B6Ng01-149G01.b_47_1185

seq1  GAATTCTCAGCTTTATCCCTCAGCCATTATATTATATGTTTGATAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTTTATCCCTCAGCCATTATATTATATGTTTGATAATAAT  50

seq1  TCTTTTTCTAGTTCTCTCTGTGTGTCTCTGTCTCTGTCTCTCTCCTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTAGTTCTCTCTGTGTGTCTCTGTCTCTGTCTCTCTCCTTTCT  100

seq1  GTATATCTCATTCTGCCCCACATTATCAGAGCAAACCTTCCTTGCTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCTCATTCTGCCCCACATTATCAGAGCAAACCTTCCTTGCTCACT  150

seq1  CTGCTCTAGTCAGGAGCAGCTCTAGCACTCAGTATGTTCCTGTTTCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTAGTCAGGAGCAGCTCTAGCACTCAGTATGTTCCTGTTTCCTGG  200

seq1  GATAGAACTATGCATGTGGGCATGCTTTTCCTTTAACTTACATCAAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACTATGCATGTGGGCATGCTTTTCCTTTAACTTACATCAAGACA  250

seq1  TAAACTATAATTTTTCTGTTGCTTTGGGGTTTTGATTTTTAATTTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTATAATTTTTCTGTTGCTTTGGGGTTTTGATTTTTAATTTTAAAA  300

seq1  TATTGTCTTTCATTCCTGGGGACATCCATTCCATTTCATGTCCTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTTTCATTCCTGGGGACATCCATTCCATTTCATGTCCTTTATTT  350

seq1  ATTCATTGTATTTCTAGCAAATCAACCACTTTGCTCAAACATCTGACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGTATTTCTAGCAAATCAACCACTTTGCTCAAACATCTGACTAA  400

seq1  TCTCTTAGGAAGGCAAAAATACTGAGCACACTTTAAGAAAAGTGTGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAGGAAGGCAAAAATACTGAGCACACTTTAAGAAAAGTGTGCTGA  450

seq1  GAACTGAGTTAATGCTGTTGGTTCTATTTAGTTCATAATCTTTATTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGTTAATGCTGTTGGTTCTATTTAGTTCATAATCTTTATTTATA  500

seq1  AGTTGACATGTGATTGTTTCTTTCCCAACCATATTCATTTGCATCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACATGTGATTGTTTCTTTCCCAACCATATTCATTTGCATCATGTT  550

seq1  AGATAACTTCAGGTGTATTTAAGTAATTACCCAAGCACAATGAATTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTTCAGGTGTATTTAAGTAATTACCCAAGCACAATGAATTTCAA  600

seq1  AGATTTTTGTCAAAGAGGAACATGTCTTTGAAAAACCATAGCACTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTGTCAAAGAGGAACATGTCTTTGAAAAACCATAGCACTTTTGT  650

seq1  AAAATATGTCATTTATATTGAGAAATAAAAAAATACTCACCAGTCACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTCATTTATATTGAGAAATAAAAAAATACTCACCAGTCACAAA  700

seq1  ACAAATACAGGCCATCAGTCCTGTGCTTCCACGTTGTATTTATAAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACAGGCCATCAGTCCTGTGCTTCCACGTTGTATTTATAAATACT  750

seq1  AAAATAAGTGAGTTAAAGAACATATTTTTAAACATTTTTCTGAACTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTGAGTTAAAGAACATATTTTTAAACATTTTTCTGAACTTATA  800

seq1  GATAACAGAATAACCACATTGCCATGCTGTTACTTTAAGAAGATATTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGAATAACCACATTGCCATGCTGTTACTTTAAGAAGATATTTAT  850

seq1  CTGAGCATCAGTGCGATGCAGCTTTCAGCAGAGACAAGCTCATCTTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCATCAGTGCGATGCAGCTTTCAGCAGAGACAAGCTCATCTTTGCC  900

seq1  ACCTCTCACTGTTGGGCTGAGAATAATTGTACTTGGATTTATACACCAGG  950
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  ACCTCTCACTGTTGGGCTGAGAA-AATTGTACTTGGATTTATACACCA-G  948

seq1  GCGTGGGTCTGTCGTTACTTGGGCATGAAGCACTCTCACTGCTTCCACAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCGTGGGTCTGTCGTTACTTGGGCATGAAGCACTCTCACTGCTTCCAC-A  997

seq1  TATGCACTAATGTGCTTAAAAATATCTTATAAATCTTCTTTTCGTCAGAC  1050
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TATGCACTAATGTGCT--AAAATATCTTATAAATCTTCTTTTCGTCAGAC  1045

seq1  TTCTTTATGGCTCATAATTGAACTGTGATCCTTACAT-GTGAGCTATGTC  1099
      |||||||| ||||||||||||||||||   ||||||| ||||||||||||
seq2  TTCTTTAT-GCTCATAATTGAACTGTGGATCTTACATGGTGAGCTATGTC  1094

seq1  ATGATTTAATATTAGCCAAAATTAATAGCCAACCTTAAGCTTCTTTATCT  1149
      ||||||||||||||||  ||||| |||||||||  ||  ||||||| |||
seq2  ATGATTTAATATTAGC--AAATT-ATAGCCAAC--TAGCCTTCTTT-TCT  1138

seq1  T  1150
      |
seq2  T  1139

seq1: chr2_44163110_44164270
seq2: B6Ng01-149G01.g_68_1203 (reverse)

seq1  TAATTCTTTCTGACCTATTCACACTACACTTGTGTGAATTCCATATAATG  50
      |||||||||||| || |||| ||||   ||||||   ||| |||| ||||
seq2  TAATTCTTTCTG-CCCATTC-CACT--CCTTGTG---ATT-CATA-AATG  41

seq1  TCCACTGTTTCTTCATCTTTTCATCTTCCTTACTTTAACTACTCTTTCAC  100
      | |||||||   |||||  |||||||  | ||| |||||||||| |||||
seq2  T-CACTGTT--CTCATC--TTCATCT--CCTACCTTAACTACTC-TTCAC  83

seq1  TACATTTCTTCAAGACAGTTGTTATAGGAATACATACTTACTAGGAATTC  150
      |||||||| |||  |||| ||||||||| |||||||||||||||||||  
seq2  TACATTTC-TCAGAACAG-TGTTATAGG-ATACATACTTACTAGGAAT--  128

seq1  TTAGCAACGGGTGTCAGCTGCCCTCTCTGGACAGCTTTGTTTGACCAGAG  200
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGC-ACGGGTGTCAGCTGCCCTCTCTGGACAGCTTTGTTTGACCAGAG  177

seq1  GAAGAGAAAGTAGATGCAGTCTCTTTCCAGTACAATGTCTCAGTAGAGGT  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAG-AAGTAGATGCAGTCTCTTTCCAGTACAATGTCTCAGTAGAGGT  226

seq1  TTGTTACTAAACTCCAGAATGAA-CAGCACTGGTCCTTGTTTTGAAAGAT  299
      ||| ||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  TTG-TACTAAACTCCAGAATGAACCAGCACTGGTCCTTG-TTTGAAAGAT  274

seq1  GGCTGCCCATCTTCCACACCTTCACCTCAATTATTTTGCAGACACTGCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCATCTTCCACACCTTCACCTCAATTATTTTGCAGACACTGCCA  324

seq1  GCCATTTCTGACACCAGGAGCAAAACAGAAGCCAAAGAGCGGCAATGCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTGACACCAGGAGCAAAACAGAAGCCAAAGAGCGGCAATGCAA  374

seq1  ATGGTGCCCTGGGTTTGGGATCTGAGCTAAGTAGATGCTTAGTTTCCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCCTGGGTTTGGGATCTGAGCTAAGTAGATGCTTAGTTTCCCCT  424

seq1  GTAAGGTCGCTATTCTTGAGTTATAAATTTAGATCCTTCCATGGGCAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTCGCTATTCTTGAGTTATAAATTTAGATCCTTCCATGGGCAGAC  474

seq1  AAATAAGTTTCAAGCTTACTTTAAAGAAAGATGTGCTATTTATAATCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTTCAAGCTTACTTTAAAGAAAGATGTGCTATTTATAATCCAC  524

seq1  CTTGCATAGATGAGAATGTCCTTCTCATGACTTAGCAAACAAATGGCATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATAGATGAGAATGTCCTTCTCATGACTTAGCAAACAAATGGCATA  574

seq1  TTGGAGTATGTAGATAATTTTGCGTACTCAAAATTTTCCCTCTAAACTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTATGTAGATAATTTTGCGTACTCAAAATTTTCCCTCTAAACTCA  624

seq1  TTAGATATTGCTTTGGTGTTTCGTTTTCTTTTGTTTTGCTGGATTTGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATATTGCTTTGGTGTTTCGTTTTCTTTTGTTTTGCTGGATTTGGTG  674

seq1  AGAAAAGTCTTAGGAAAGTGTATGAATTTACTTATTTAGTCCTGTTTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTCTTAGGAAAGTGTATGAATTTACTTATTTAGTCCTGTTTTGA  724

seq1  GTTCAGTAGTGTTGTAAGAAAATGCTTTACATTCATCATTTAAAAGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTAGTGTTGTAAGAAAATGCTTTACATTCATCATTTAAAAGTTTT  774

seq1  ACCAAAATATTTCTCAATATTCATAAATAGCATATTTATGAATTTACTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATATTTCTCAATATTCATAAATAGCATATTTATGAATTTACTGT  824

seq1  GTTGGAACCTGTCACTTTTAATACTGACAAGCTTCTCTGGACACTCTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACCTGTCACTTTTAATACTGACAAGCTTCTCTGGACACTCTCCT  874

seq1  TTTATCTGAACTACTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTGAACTACTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT  924

seq1  GTTATGTGCTGAAGACTTTAGGTTCGTCTTGAAAGGCATAAGTGGACCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTGCTGAAGACTTTAGGTTCGTCTTGAAAGGCATAAGTGGACCCT  974

seq1  GCACTTAATGTATGTTTCCTTTAACCTTTTGCTTCTATTCCAGTCTTGGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAATGTATGTTTCCTTTAACCTTTTGCTTCTATTCCAGTCTTGGA  1024

seq1  CTTTGTCCTGGTGATTCAAGCAATAGTCCGGTTCTTACAATTCTCAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTGGTGATTCAAGCAATAGTCCGGTTCTTACAATTCTCAAAAG  1074

seq1  GTCCCACTATGCCCATGATGGTCTGGCACTCTAAAAGGTGAAGTGCTTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACTATGCCCATGATGGTCTGGCACTCTAAAAGGTGAAGTGCTTGC  1124

seq1  ATCTTTGAATTC  1161
      ||||||||||||
seq2  ATCTTTGAATTC  1136