BAC Information

Click to search

BAC

Clone NameB6Ng01-149G02
Chromosome2 (Build37)
Map Location 40,434,940 - 40,538,469
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149G02.bB6Ng01-149G02.g
ACCDH945732DH945733
length1,0581,191
definitionDH945732|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G02, 5' end.DH945733|Mus musculus domesticus DNA, BAC clone: B6Ng01-149G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,434,940 - 40,436,007)(40,537,269 - 40,538,469)
sequence
gaattctgcactaaagctaatactcaataattcctatcatttctacatta
ttaaagattcttccccaaagactcagcttagggattttggaatctctatt
ttttgtttttttaataaggagtgttgttttgttctgcattgttttcctag
atctgtgatttctgccaataatacaaaataaatagctacaaatatactga
gcatgtatttaaacaaaagtttcctctggcagcctcttttccatattggc
caatatctttatgatctcctctgaatatacacatagtcatattgaccatc
ccttccaattcttcattcagtagaaaccatattccatttatctacttgtt
tcttaatcagtttggttatagtgaaaatatactctagaaataacaaggct
ttaacatataatgtaaaatttaggttaatatcatctactagaatgggaga
ttaaattagcatcctgtataagggaaaaggtgcttcttctgtcagtgtaa
aagatggatgaaattttaatggaattgaaacatttatacttgtataccaa
atatcttttgaaaattttatgtcttaaagagaaatgaagtataagctaag
acaccaaggcgctgtctgagtctcacttttataattctattttaccccat
tgaccatgatatgtgcagattctttgactctttaacatataaagtatcat
gaggtttacattgtttatgtgtactgtattattttttgagactctaataa
attgtctagcaaggtctcccctattattacgctaatatgtatactgtcca
tgagcaacaaacataatttcaatcaaaaccactccttcagtctatgacac
agtttagctacctcctggataccttctaatttttttttttttttgtgtga
tgggacacattattttcttttattgtctacaggagctttattacaataac
tgtatagaagtttttcctaggtcctcccttgaaagaaaatttgttacatt
caaacaagcagaaccaaaactggtagcagattttgatatgttatgattca
gcttgaag
gaattcatttggaataacaaaaaacaaaaacaaaaaaacaaaaaaacaaa
aaatgggatagaaaaatactattctctacaaaaacttacctctggggaaa
taaccatacctgacctaaagctgtattacagagtaatcatgataatattg
taaggtattagtacagagacaggcacatatatcaaaggaatagaattgaa
gacccagaaatgaacccagatacctatgctcacttgatctttgacaaaag
agctaaaaccatccagtcaacatgtagaggaatgcacagtgatccattct
tatctctttgtataaagcacaagtccaagtgaatcaagaacatccacata
aaaccaggtacactgaaactaatagaagagaaattggggaagattcttga
aaacatggcctcagggaaaaatttcttgactaatattttgatagggccct
aacttacctgtgtatttagaccctttaattattctgaagaaatcaatcaa
catgtatcttctaggttgttcaagaatattaacaaaaacttcatttgtta
gaatggtaatttccttagtctttctcaaatgggacatgtcactatggagt
cattggttttgacctctttgttggcctaggaacaaatgaacaatttttta
tgcaattttatataacacatgatttgatttgttttacttttctttctgcc
tttttggggttaagcaatacatgctatgatgttctctattcccaggcaat
tctcttttctgtctctttaactcagtttaaataatcacctttgggctggt
gagatggctcagtgggtaagagcacccaactgctcttccgaaggtcagga
gttcaaatcccagcaaccacatggtggctcacaaccatccgcaaggagat
ctgactccctcttctggagtgtctgaggacagctacagtgtactttaata
ataaataaataaataaataataaataaataaataaataaataaatcttta
aaaaataataataaatatcacctttttttaacatttagtgtttgtaagaa
tagagttaaattgtacagagtttttttcttttcactccattgtcagaagc
caattagcatgaattcaatttgtgaaatatctttccaaatctggatggat
tcccatggtttcaccataccgagaagaagaaactgaagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40434940_40436007
seq2: B6Ng01-149G02.b_50_1107

seq1  GAATTCTGCACTAAAGCTAATACTCAATAATTCCTATCATTTCTACATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACTAAAGCTAATACTCAATAATTCCTATCATTTCTACATTA  50

seq1  TTAAAGATTCTTCCCCAAAGACTCAGCTTAGGGATTTTGGAATCTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTCTTCCCCAAAGACTCAGCTTAGGGATTTTGGAATCTCTATT  100

seq1  TTTTGTTTTTTTAATAAGGAGTGTTGTTTTGTTCTGCATTGTTTTCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTAATAAGGAGTGTTGTTTTGTTCTGCATTGTTTTCCTAG  150

seq1  ATCTGTGATTTCTGCCAATAATACAAAATAAATAGCTACAAATATACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGATTTCTGCCAATAATACAAAATAAATAGCTACAAATATACTGA  200

seq1  GCATGTATTTAAACAAAAGTTTCCTCTGGCAGCCTCTTTTCCATATTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATTTAAACAAAAGTTTCCTCTGGCAGCCTCTTTTCCATATTGGC  250

seq1  CAATATCTTTATGATCTCCTCTGAATATACACATAGTCATATTGACCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCTTTATGATCTCCTCTGAATATACACATAGTCATATTGACCATC  300

seq1  CCTTCCAATTCTTCATTCAGTAGAAACCATATTCCATTTATCTACTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAATTCTTCATTCAGTAGAAACCATATTCCATTTATCTACTTGTT  350

seq1  TCTTAATCAGTTTGGTTATAGTGAAAATATACTCTAGAAATAACAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCAGTTTGGTTATAGTGAAAATATACTCTAGAAATAACAAGGCT  400

seq1  TTAACATATAATGTAAAATTTAGGTTAATATCATCTACTAGAATGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATATAATGTAAAATTTAGGTTAATATCATCTACTAGAATGGGAGA  450

seq1  TTAAATTAGCATCCTGTATAAGGGAAAAGGTGCTTCTTCTGTCAGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAGCATCCTGTATAAGGGAAAAGGTGCTTCTTCTGTCAGTGTAA  500

seq1  AAGATGGATGAAATTTTAATGGAATTGAAACATTTATACTTGTATACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGATGAAATTTTAATGGAATTGAAACATTTATACTTGTATACCAA  550

seq1  ATATCTTTTGAAAATTTTATGTCTTAAAGAGAAATGAAGTATAAGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTGAAAATTTTATGTCTTAAAGAGAAATGAAGTATAAGCTAAG  600

seq1  ACACCAAGGCGCTGTCTGAGTCTCACTTTTATAATTCTATTTTACCCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGGCGCTGTCTGAGTCTCACTTTTATAATTCTATTTTACCCCAT  650

seq1  TGACCATGATATGTGCAGATTCTTTGACTCTTTAACATATAAAGTATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGATATGTGCAGATTCTTTGACTCTTTAACATATAAAGTATCAT  700

seq1  GAGGTTTACATTGTTTATGTGTACTGTATTATTTTTTGAGACTCTAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTACATTGTTTATGTGTACTGTATTATTTTTTGAGACTCTAATAA  750

seq1  ATTGTCTAGCAAGGTCTCCCCTATTATTACGCTAATATGTATACTGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAGCAAGGTCTCCCCTATTATTACGCTAATATGTATACTGTCCA  800

seq1  TGAGCAACAAACATAATTTCAATCAAAACCACTCCTTCAGTCTATGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACAAACATAATTTCAATCAAAACCACTCCTTCAGTCTATGACAC  850

seq1  AGTTTAAGCTACCTCCTGGATACCTTCTAA-TTTTTTTTTTTTTTGTGTG  899
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTTT-AGCTACCTCCTGGATACCTTCTAATTTTTTTTTTTTTTTGTGTG  899

seq1  ATGGGACAACATTA-TTTCTCTTAATGTCTACAGGAGCTTTATTACAATA  948
      ||||||| |||||| ||||| ||| |||||||||||||||||||||||||
seq2  ATGGGAC-ACATTATTTTCTTTTATTGTCTACAGGAGCTTTATTACAATA  948

seq1  ACTGTATTAGAAGTTTTTCCTAGTTCTCCCTTTGAAAGAATATTTGTTAC  998
      |||||| |||||||||||||||| ||  || ||||||||| |||||||||
seq2  ACTGTA-TAGAAGTTTTTCCTAGGTCCTCCCTTGAAAGAAAATTTGTTAC  997

seq1  ATTTCAAAACAAGCAAGAACCAAAAACTGGTAAGCAGATTTTTGATATTG  1048
      |||   |||||||| |||||| ||||||||| |||||| |||||||| ||
seq2  ATT--CAAACAAGC-AGAACC-AAAACTGGT-AGCAGA-TTTTGATA-TG  1040

seq1  TTAATGATTCAGGCTTGAAG  1068
      || |||||||| ||||||||
seq2  TT-ATGATTCA-GCTTGAAG  1058

seq1: chr2_40537269_40538469
seq2: B6Ng01-149G02.g_68_1258 (reverse)

seq1  ATTCCTCAGTTTCTTATATTTCTTTGTGTATGGTTGGAGCCCCATGGAAT  50
      |||| |||||||||| |     | |  |||||||  ||  ||   |||||
seq2  ATTCTTCAGTTTCTTCT-----TCTCGGTATGGT--GAAACCATGGGAAT  43

seq1  -CATACAGATTTTGAAAGATATATCCACAAAT--GATTCATGCTAAATAG  97
       ||| ||||||| ||||||||| | |||||||   ||||||||||| | |
seq2  CCATCCAGATTTGGAAAGATAT-TTCACAAATTGAATTCATGCTAATTGG  92

seq1  CTCTTGACAAATGGAGTGAAA--GAAAAAACTCTTGTTACAATTTTAACT  145
      ||  |||| ||||||||||||   ||||||||||   ||||| |||||||
seq2  CTTCTGAC-AATGGAGTGAAAAGAAAAAAACTCT--GTACAA-TTTAACT  138

seq1  CTA-TCTTACAAACACTAAATGTTAAAAAAAAGGTGATTATTATTATTAT  194
      ||| |||||||||||||||||||| |||||||||||||  ||||||||||
seq2  CTATTCTTACAAACACTAAATGTT-AAAAAAAGGTGATATTTATTATTAT  187

seq1  TTTTTAAAGATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTA  244
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTTTAAAGATTTATTTATTTATTTATTTATTTA-TTATTTATTTATTTA  236

seq1  TTTATTTATTTAAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGG  294
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TTTATT--ATTAAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGG  284

seq1  GAGTCAGATCTCCTTGCGGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGATCTCCTTGCGGATGGTTGTGAGCCACCATGTGGTTGCTGGGA  334

seq1  TTTGAACTCCTGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCCACTGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCCTGACCTTCGGAAGAGCAGTTGGGTGCTCTTACCCACTGAG  384

seq1  CCATCTCACCAGCCCAAAGGTGATTATTTAAACTGAGTTAAAGAGACAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCACCAGCCCAAAGGTGATTATTTAAACTGAGTTAAAGAGACAGA  434

seq1  AAAGAGAATTGCCTGGGAATAGAGAACATCATAGCATGTATTGCTTAACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATTGCCTGGGAATAGAGAACATCATAGCATGTATTGCTTAACC  484

seq1  CCAAAAAGGCAGAAAGAAAAGTAAAACAAATCAAATCATGTGTTATATAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGGCAGAAAGAAAAGTAAAACAAATCAAATCATGTGTTATATAA  534

seq1  AATTGCATAAAAAATTGTTCATTTGTTCCTAGGCCAACAAAGAGGTCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATAAAAAATTGTTCATTTGTTCCTAGGCCAACAAAGAGGTCAAA  584

seq1  ACCAATGACTCCATAGTGACATGTCCCATTTGAGAAAGACTAAGGAAATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGACTCCATAGTGACATGTCCCATTTGAGAAAGACTAAGGAAATT  634

seq1  ACCATTCTAACAAATGAAGTTTTTGTTAATATTCTTGAACAACCTAGAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTAACAAATGAAGTTTTTGTTAATATTCTTGAACAACCTAGAAG  684

seq1  ATACATGTTGATTGATTTCTTCAGAATAATTAAAGGGTCTAAATACACAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTTGATTGATTTCTTCAGAATAATTAAAGGGTCTAAATACACAG  734

seq1  GTAAGTTAGGGCCCTATCAAAATATTAGTCAAGAAATTTTTCCCTGAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTAGGGCCCTATCAAAATATTAGTCAAGAAATTTTTCCCTGAGGC  784

seq1  CATGTTTTCAAGAATCTTCCCCAATTTCTCTTCTATTAGTTTCAGTGTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTCAAGAATCTTCCCCAATTTCTCTTCTATTAGTTTCAGTGTAC  834

seq1  CTGGTTTTATGTGGATGTTCTTGATTCACTTGGACTTGTGCTTTATACAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTATGTGGATGTTCTTGATTCACTTGGACTTGTGCTTTATACAA  884

seq1  AGAGATAAGAATGGATCACTGTGCATTCCTCTACATGTTGACTGGATGGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAGAATGGATCACTGTGCATTCCTCTACATGTTGACTGGATGGT  934

seq1  TTTAGCTCTTTTGTCAAAGATCAAGTGAGCATAGGTATCTGGGTTCATTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTCTTTTGTCAAAGATCAAGTGAGCATAGGTATCTGGGTTCATTT  984

seq1  CTGGGTCTTCAATTCTATTCCTTTGATATATGTGCCTGTCTCTGTACTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTTCAATTCTATTCCTTTGATATATGTGCCTGTCTCTGTACTAA  1034

seq1  TACCTTACAATATTATCATGATTACTCTGTAATACAGCTTTAGGTCAGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTACAATATTATCATGATTACTCTGTAATACAGCTTTAGGTCAGGT  1084

seq1  ATGGTTATTTCCCCAGAGGTAAGTTTTTGTAGAGAATAGTATTTTTCTAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATTTCCCCAGAGGTAAGTTTTTGTAGAGAATAGTATTTTTCTAT  1134

seq1  CCCATTTTTTGTTTTTTTGTTTTTTTGTTTTTGTTTTTTGTTATTCCAAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTTTGTTTTTTTGTTTTTTTGTTTTTGTTTTTTGTTATTCCAAA  1184

seq1  TGAATTC  1201
      |||||||
seq2  TGAATTC  1191