BAC Information

Click to search

BAC

Clone NameB6Ng01-149H06
Chromosome2 (Build37)
Map Location 169,496,004 - 169,650,747
singlet/doubletdoublet
Overlap geneTshz2
Upstream geneAtp9a, Sall4, Zfp64, LOC100043909, EG668954
Downstream geneLOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1, LOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149H06.bB6Ng01-149H06.g
ACCDH945787DH945788
length680964
definitionDH945787|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H06, 5' end.DH945788|Mus musculus domesticus DNA, BAC clone: B6Ng01-149H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,650,071 - 169,650,747)(169,496,004 - 169,496,961)
sequence
gaattccttaagagattctcattttcaaatgtgaggtgtgaccatcgatg
acctaagccaatggaacttaatacctaggtgccaggagaaggagcgcagc
acagcatttggacttccatggtatgatattcttgccgtcaccaactctac
gcaaccactaagtaaatggaggcgagaaatgcatagttaggtttcatggc
aatacatgttgacttctaccctgtacgggggcggggggtggggttctatg
aaggccgtgtgataataagaacgtgagaaaaggaggggcttggttcacag
tgctgacccgcagatgtggaaacagagaacaaacagggaaagcattctga
ggtcaatacaaagcccgcccgcacgccagctcccagggcgagggcgtttc
tgtagtgtctgtgagttcacagccatgttcaactccaaacatcctctgtg
tggagttgtgagagtcaccataaaggaaaaggttaagagtcgataaaatc
attttcctctgatggtagaagtggaatgccatcgttagttaaaaaagcct
taattaaatggttggattactaattagtgttacaaccattaagagagtgg
tttgttgggccagtagacagccatctggtaaagaagctaagagctgtgaa
gaggaggaaacagcacctgggtgatgatgt
gaattctatatctcaaaccaggaaatcaactccgcggagctaggaggaag
ttgacgctaatagtcaaggctgaaaagattaactcccaccgaattgatgt
gatctggagttgggaaggagagcgcatttagatcactaatctctaatcac
taattctcttagagatgtgaacagcaggtttcggtcactggtttgttttg
tgacaaggtctcttatagcccagactggccttgaacccttgatctttgtg
ccaccacaccctgtagtgtgtactcttgatgaagggggaaaaaatctcaa
gaaaaagaaagagagccagagaaaaggtggataacctccaagagtacttt
aacctccaggagtccagttaacggggcaatgggggattgggtgtcacctg
aacgaaagcctgtggctagctcatggcttatccttcaggaatgatttggg
cagagcagttagtgaaatattccattgctcatctgtcctgcacaatcgaa
aatcccccccagttagggaagagtgggaagagccctgatggttttccaat
ctaggcatgcgctggccccctgacagccagaagggagacgtttgggagcc
aggactcttaacagagaggagaaaccaagaaagaactccaatgagtcagg
gtttgtaaagggaattggcattgatacttaaagcattctcggggtggatg
tggaaaacatcacatttggcatggtcttgactctgaaggctgatagaacg
atatgggaatttggagagattgaggagaaacctggtcaagtaagggccag
ccagaccatttattttccagtttgaaaaaatgaagagagaaaacagttgc
atcaccctcagtgacccattcccggaaccaaattccacagagaacaaggt
aagaaactttccaggcggtgagcctgcacaccctttgggtttccaggggg
tccggggaaaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_169650071_169650747
seq2: B6Ng01-149H06.b_45_724 (reverse)

seq1  ACATCATCA-CCAGGTGCTGTTTCCTCCTCTTCACAGCTCTTAGCTTC-T  48
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  ACATCATCACCCAGGTGCTGTTTCCTCCTCTTCACAGCTCTTAGCTTCTT  50

seq1  TACCAGATGGCTGTCTACTGGCCCAAC-AACCACTCTCTTAATGGTTGTA  97
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACCAGATGGCTGTCTACTGGCCCAACAAACCACTCTCTTAATGGTTGTA  100

seq1  ACACTAATTAGTAATCCAGCCATTTAATTAAGGCTTTTTTAACTAACGAT  147
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACACTAATTAGTAATCCAACCATTTAATTAAGGCTTTTTTAACTAACGAT  150

seq1  GGCATTCCACTTCTACCATCAGAGGAAAATGATTTTATCGACTCTTAACC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCACTTCTACCATCAGAGGAAAATGATTTTATCGACTCTTAACC  200

seq1  TTTTCCTTTATGGTGACTCTCACAACTCCACACAGAGGATGTTTGGAGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTATGGTGACTCTCACAACTCCACACAGAGGATGTTTGGAGTT  250

seq1  GAACATGGCTGTGAACTCACAGACACTACAGAAACGCCCTCGCCCTGGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGGCTGTGAACTCACAGACACTACAGAAACGCCCTCGCCCTGGGA  300

seq1  GCTGGCGTGCGGGCGGGCTTTGTATTGACCTCAGAATGCTTTCCCTGTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGTGCGGGCGGGCTTTGTATTGACCTCAGAATGCTTTCCCTGTTT  350

seq1  GTTCTCTGTTTCCACATCTGCGGGTCAGCACTGTGAACCAAGCCCCTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGTTTCCACATCTGCGGGTCAGCACTGTGAACCAAGCCCCTCCT  400

seq1  TTTCTCACGTTCTTATTATCACACGGCCTTCATAGAACCCCACCCCCCGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACGTTCTTATTATCACACGGCCTTCATAGAACCCCACCCCCCGC  450

seq1  CCCCGTACAGGGTAGAAGTCAACATGTATTGCCATGAAACCTAACTATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTACAGGGTAGAAGTCAACATGTATTGCCATGAAACCTAACTATGC  500

seq1  ATTTCTCGCCTCCATTTACTTAGTGGTTGCGTAGAGTTGGTGACGGCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCGCCTCCATTTACTTAGTGGTTGCGTAGAGTTGGTGACGGCAAG  550

seq1  AATATCATACCATGGAAGTCCAAATGCTGTGCTGCGCTCCTTCTCCTGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATACCATGGAAGTCCAAATGCTGTGCTGCGCTCCTTCTCCTGGC  600

seq1  ACCTAGGTATTAAGTTCCATTGGCTTAGGTCATCGATGGTCACACCTCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGTATTAAGTTCCATTGGCTTAGGTCATCGATGGTCACACCTCAC  650

seq1  ATTTGAAAATGAGAATCTCTTAAGGAATTC  677
      ||||||||||||||||||||||||||||||
seq2  ATTTGAAAATGAGAATCTCTTAAGGAATTC  680

seq1: chr2_169496004_169496961
seq2: B6Ng01-149H06.g_69_1027

seq1  GAATTCTATATCTCAAACCAGGAAATCAACTCCGCGGAGCTAGGAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATCTCAAACCAGGAAATCAACTCCGCGGAGCTAGGAGGAAG  50

seq1  TTGACGCTAATAGTCAAGGCTGAAAAGATTAACTCCCACCGAATTGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACGCTAATAGTCAAGGCTGAAAAGATTAACTCCCACCGAATTGATGT  100

seq1  GATCTGGAGTTGGGAAGGAGAGCGCATTTAGATCACTAATCTCTAATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAGTTGGGAAGGAGAGCGCATTTAGATCACTAATCTCTAATCAC  150

seq1  TAATTCTCTTAGAGATGTGAACAGCAGGTTTCGGTCACTGGTTTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTTAGAGATGTGAACAGCAGGTTTCGGTCACTGGTTTGTTTTG  200

seq1  TGACAAGGTCTCTTATAGCCCAGACTGGCCTTGAACCCTTGATCTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTCTCTTATAGCCCAGACTGGCCTTGAACCCTTGATCTTTGTG  250

seq1  CCACCACACCCTGTAGTGTGTACTCTTGATGAAGGGGGAAAAAATCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACCCTGTAGTGTGTACTCTTGATGAAGGGGGAAAAAATCTCAA  300

seq1  GAAAAAGAAAGAGAGCCAGAGAAAAGGTGGATAACCTCCAAGAGTACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAAGAGAGCCAGAGAAAAGGTGGATAACCTCCAAGAGTACTTT  350

seq1  AACCTCCAGGAGTCCAGTTAACGGGGCAATGGGGGATTGGGTGTCACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCAGGAGTCCAGTTAACGGGGCAATGGGGGATTGGGTGTCACCTG  400

seq1  AACGAAAGCCTGTGGCTAGCTCATGGCTTATCCTTCAGGAATGATTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAGCCTGTGGCTAGCTCATGGCTTATCCTTCAGGAATGATTTGGG  450

seq1  CAGAGCAGTTAGTGAAATATTCCATTGCTCATCTGTCCTGCACAATCGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGTTAGTGAAATATTCCATTGCTCATCTGTCCTGCACAATCGAA  500

seq1  AATCCCCCCCAGTTAGGGAAGAGTGGGAAGAGCCCTGATGGTTTTCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCCCAGTTAGGGAAGAGTGGGAAGAGCCCTGATGGTTTTCCAAT  550

seq1  CTAGGCATGCGCTGGCCCCCTGACAGCCAGAAGGGAGACGTTTGGGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATGCGCTGGCCCCCTGACAGCCAGAAGGGAGACGTTTGGGAGCC  600

seq1  AGGACTCTTAACAGAGAGGAGAAACCAAGAAAGAACTCCAATGAGTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTTAACAGAGAGGAGAAACCAAGAAAGAACTCCAATGAGTCAGG  650

seq1  GTTTGTAAAGGGAATTGGCATTGATACTTAAAGCATTCTCGGGGTGGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAAAGGGAATTGGCATTGATACTTAAAGCATTCTCGGGGTGGATG  700

seq1  TGGAAAACATCACA-TTGGCATGGTCTTGACTCTGAAGGCTGATAGAACG  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGAAAACATCACATTTGGCATGGTCTTGACTCTGAAGGCTGATAGAACG  750

seq1  ATA-AGGAATTTGGAGAGATTGAGGAGAAAACTGGTCAAGTAAGGGCCAA  798
      |||  ||||||||||||||||||||||||| ||||||||||||||||| |
seq2  ATATGGGAATTTGGAGAGATTGAGGAGAAACCTGGTCAAGTAAGGGCC-A  799

seq1  GCCAGACCA-TTATTTT-CAGTTTG-AGAAATGAAGAGAGAAAACAGTTG  845
      ||||||||| ||||||| ||||||| | ||||||||||||||||||||||
seq2  GCCAGACCATTTATTTTCCAGTTTGAAAAAATGAAGAGAGAAAACAGTTG  849

seq1  CATACACCCTCAGTGACACACT-CCGGAACCAAAATTCCACAGAGAACAA  894
      ||| ||||||||||||| || | |||||||| ||||||||||||||||||
seq2  CAT-CACCCTCAGTGACCCATTCCCGGAACC-AAATTCCACAGAGAACAA  897

seq1  GGAGAGAAACTTTCCAGGCGGTGAGCTCTGCACACCCTTGGGTTTTCCAT  944
      ||  |||||||||||||||||||||| |||||||||||| || |||||| 
seq2  GGTAAGAAACTTTCCAGGCGGTGAGC-CTGCACACCCTTTGGGTTTCCA-  945

seq1  GTGGTTCCGGGGAA  958
      | || |||||||||
seq2  GGGGGTCCGGGGAA  959