BAC Information

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BAC

Clone NameB6Ng01-149L02
Chromosome2 (Build37)
Map Location 161,572,856 - 161,696,370
singlet/doubletdoublet
Overlap genePtprt
Upstream genePlcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L02.bB6Ng01-149L02.g
ACCDH945961DH945962
length1,143203
definitionDH945961|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L02, 5' end.DH945962|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,695,219 - 161,696,370)(161,572,856 - 161,573,058)
sequence
gaattctctcctcagaaattcataactcactagatattctcatgtggtta
tttttctagataagtggtagagaattctgtgcggttgtaatagaaatccc
agcggatttatatcatacctgcgataaattcatagattaacttagaaaga
attgatactattgccagattgaatttcttgtggccttcataaacctttct
ccatttctgagtaggattttgtggttttattcacatcgtttcttcacgca
gttacgcctatttcttgttaagtgtgggcctatcacaccgtttcttcaca
tggctaagccatgggactagctaggcatttcttgttaagcttgggcctag
ggttgctcttgttttgttttgtttttgtttttctgaattttttttcaatt
tataaaatttcccttgctctaccttttcaaattgatcattatttccattg
catttcttatttatttcgtgaagctattagctttttatattaattttgta
accagccactttggtaaatgcctccatttcttttctagtatgttttacag
atgtttcactatggctgacttgcaaacaataatgatttcttaaaatttct
tttttaacagtgagagtgccttttatatcaatctctagtttaattgcttt
ggcaattatatctggaatagaggacatttcctcttgtcctgagtctaatg
taaaatgcttggattatttcaacattaagcacgagaggaagatttaaata
tgagatagctttttcttttatcatgttaaaatccagtcatttatttccat
tttaccaaaccttttatcagggatggatgctgaatttctttaaaagcttt
tttagaaaggcatctattgatattcatctagcaaatatttggtgaataga
ggagacaggaaataaagtctcttccttcgtgaaagtgatggtccttttgc
tagcgagaagcaaattttcaaaggacacagtccatgtgagaagggtgctt
ctcagagggacgccatctgcagaggagttggcatgcaggagcttgtggga
gctgggaaattttttgagccatgagatcaaaatatcagagatgtctctgt
taacctttattgaggctttcatttgcctttcaggaaattgtta
tcaggtgacagatgtaatcaaaggccaatttattatgataattgttatta
gcacagcttctcattagttttggatgttaactgcaaggccagcaggtgtt
ttaagacagcacaggggagcaagcctggccatgtcttcaaggagaaagag
aaaaaagaagtatgatgtggggggcgtgggggacgtgggggacgtggggg
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_161695219_161696370
seq2: B6Ng01-149L02.b_46_1188 (reverse)

seq1  TAACAAATTTTCCTGAAAGGCAAATGGAAAGCCCAAATAAAGGTT-ACAG  49
      ||||||  ||||||||||||||||| |||||||  |||||||||| ||||
seq2  TAACAA--TTTCCTGAAAGGCAAAT-GAAAGCCTCAATAAAGGTTAACAG  47

seq1  AGACAATCTCCTGATAATTTTTGATCTCATTGCTCAATAGATTTCCCAGC  99
      |||| |||| ||||||  |||||||||||| |||||| | ||||||||||
seq2  AGAC-ATCT-CTGATA--TTTTGATCTCATGGCTCAAAAAATTTCCCAGC  93

seq1  TCCCACAAGGCTCTGCATGCCAACCTCCTCTGCAGATGGCGTCCCCTCTG  149
      |||||||||   ||||||||||| |||||||||||||||||| |||||||
seq2  TCCCACAAGCTCCTGCATGCCAA-CTCCTCTGCAGATGGCGT-CCCTCTG  141

seq1  AGAAGCACCCTTCTCACATGGACTGTGTCCTTTGAAAATTTGCTTCTCGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACCCTTCTCACATGGACTGTGTCCTTTGAAAATTTGCTTCTCGC  191

seq1  TAGCAAAAGGACCATCACTTTTCACGAAGGAAGAGACTTTATTTCCTGTC  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCAAAAGGACCATCAC-TTTCACGAAGGAAGAGACTTTATTTCCTGTC  240

seq1  TCCTCTATTCACCAAATATTTGCTAGATGAATATCAATAGATGCCTTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATTCACCAAATATTTGCTAGATGAATATCAATAGATGCCTTTCT  290

seq1  AAAAAAGCTTTTAAAGAAATTCAGCATCCATCCCTGATAAAAGGTTTGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCTTTTAAAGAAATTCAGCATCCATCCCTGATAAAAGGTTTGGT  340

seq1  AAAATGGAAATAAATGACTGGATTTTAACATGATAAAAGAAAAAGCTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAATAAATGACTGGATTTTAACATGATAAAAGAAAAAGCTATC  390

seq1  TCATATTTAAATCTTCCTCTCGTGCTTAATGTTGAAATAATCCAAGCATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTAAATCTTCCTCTCGTGCTTAATGTTGAAATAATCCAAGCATT  440

seq1  TTACATTAGACTCAGGACAAGAGGAAATGTCCTCTATTCCAGATATAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAGACTCAGGACAAGAGGAAATGTCCTCTATTCCAGATATAATT  490

seq1  GCCAAAGCAATTAAACTAGAGATTGATATAAAAGGCACTCTCACTGTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGCAATTAAACTAGAGATTGATATAAAAGGCACTCTCACTGTTAA  540

seq1  AAAAGAAATTTTAAGAAATCATTATTGTTTGCAAGTCAGCCATAGTGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATTTTAAGAAATCATTATTGTTTGCAAGTCAGCCATAGTGAAA  590

seq1  CATCTGTAAAACATACTAGAAAAGAAATGGAGGCATTTACCAAAGTGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTAAAACATACTAGAAAAGAAATGGAGGCATTTACCAAAGTGGCT  640

seq1  GGTTACAAAATTAATATAAAAAGCTAATAGCTTCACGAAATAAATAAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAAAATTAATATAAAAAGCTAATAGCTTCACGAAATAAATAAGAA  690

seq1  ATGCAATGGAAATAATGATCAATTTGAAAAGGTAGAGCAAGGGAAATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGGAAATAATGATCAATTTGAAAAGGTAGAGCAAGGGAAATTTT  740

seq1  ATAAATTGAAAAAAAATTCAGAAAAACAAAAACAAAACAAAACAAGAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTGAAAAAAAATTCAGAAAAACAAAAACAAAACAAAACAAGAGCA  790

seq1  ACCCTAGGCCCAAGCTTAACAAGAAATGCCTAGCTAGTCCCATGGCTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGCCCAAGCTTAACAAGAAATGCCTAGCTAGTCCCATGGCTTAG  840

seq1  CCATGTGAAGAAACGGTGTGATAGGCCCACACTTAACAAGAAATAGGCGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAAGAAACGGTGTGATAGGCCCACACTTAACAAGAAATAGGCGT  890

seq1  AACTGCGTGAAGAAACGATGTGAATAAAACCACAAAATCCTACTCAGAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCGTGAAGAAACGATGTGAATAAAACCACAAAATCCTACTCAGAAA  940

seq1  TGGAGAAAGGTTTATGAAGGCCACAAGAAATTCAATCTGGCAATAGTATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGGTTTATGAAGGCCACAAGAAATTCAATCTGGCAATAGTATC  990

seq1  AATTCTTTCTAAGTTAATCTATGAATTTATCGCAGGTATGATATAAATCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTCTAAGTTAATCTATGAATTTATCGCAGGTATGATATAAATCC  1040

seq1  GCTGGGATTTCTATTACAACCGCACAGAATTCTCTACCACTTATCTAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTTCTATTACAACCGCACAGAATTCTCTACCACTTATCTAGAA  1090

seq1  AAATAACCACATGAGAATATCTAGTGAGTTATGAATTTCTGAGGAGAGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCACATGAGAATATCTAGTGAGTTATGAATTTCTGAGGAGAGAA  1140

seq1  TTC  1152
      |||
seq2  TTC  1143

seq1: chr2_161572856_161573058
seq2: B6Ng01-149L02.g_72_274

seq1  TCAGGTGACAGATGTAATCAAAGGCCAATTTATTATGATAATTGTTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGACAGATGTAATCAAAGGCCAATTTATTATGATAATTGTTATTA  50

seq1  GCACAGCTTCTCATTAGTTTTGGATGTTAACTGCAAGGCCAGCAGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTTCTCATTAGTTTTGGATGTTAACTGCAAGGCCAGCAGGTGTT  100

seq1  TTAAGACAGCACAGGGGAGCAAGCCTGGCCATGTCTTCAAGGAGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGCACAGGGGAGCAAGCCTGGCCATGTCTTCAAGGAGAAAGAG  150

seq1  AAAAAAGAAGTATGATGTGGGGGGCGTGGGGGACGTGGGGGACGTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGTATGATGTGGGGGGCGTGGGGGACGTGGGGGACGTGGGGG  200

seq1  ATG  203
      |||
seq2  ATG  203