BAC Information

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BAC

Clone NameB6Ng01-149N17
Chromosome2 (Build37)
Map Location 21,934,380 - 22,042,224
singlet/doubletdoublet
Overlap geneLOC637235
Upstream geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneMyo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149N17.bB6Ng01-149N17.g
ACCDH946081DH946082
length6341,071
definitionDH946081|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N17, 5' end.DH946082|Mus musculus domesticus DNA, BAC clone: B6Ng01-149N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,934,380 - 21,935,010)(22,041,143 - 22,042,224)
sequence
gaattcactatgattatatgaactcatgtttttgaagtgcctagaaaacc
ttcagcacaattactatgcgacttcaattaattattatgaagcaggggga
taagagagattctatactgatctctgttctcttggaagatgaagcttata
aacttctttgcatgtacaaccccagattgtaaacactgtgctctggatca
gactctcattccaactgataatggctctgagcctccagcaaggatcatgc
ctagggatcatttctttccagaattgaatactaactaacttagaggaagc
aagccacacaaagatactatacataagataaaatttgaaagaatgaaagg
aaatcaaggcaaacaggcatgaagtatatcagataaaaatgtttgtttgt
ttgtgtgtgtgtgtgtgtgtgtgtgtgtgatatgactgtgtaagtccatg
tgttcatacgtgtataaatagaggcaagagcagcattcatgtcacatgtc
ttcctttgttgctttttcattttgacttgagatggggtctctcactgaac
tggaagcttgcaatttcagctaagataacggcccagctcacaggatctgt
ctgtcaaaatatatttactgcataactataaaat
gaattctctgtttagatctgttttatttttaattgggttattcattttct
taatattcgatttttttacttctttatatattttggatattagcctttta
ttggatgtgtagttgttaaaaatttttcccatttcataagatgctgcttt
gtccaaattatgtcattacatacatgggaatgtaaatttctgtgcgttta
taaaagctaaaatttagaaactatttaaatgctatctttacagagacaca
aaacccaagattatgcattactttagatgtttgttgtcttaattttcttt
ctattgctgtaataaacaccctgataaaaaacaacttgatttattttggc
ttaccactgtagtccattaagaagaggagtcttggctggaactcatagca
ggaaactagaagcaaggattgaagcagaggcagtggaagaatgctgctta
ctggctctctctgcatggcttgctcatgttgctttctgaaactgcccaag
acaaacctcagggtttgtccataggttaatctgatgggatcattttctca
attgaaggttccccttcccagatgaccctagcttgtatcaagttgacaaa
aaactagccagctcactgacccatcatcaaaacctttcttcattgtcttt
taggacagctttgaatacaaatcctgtttaatggaataagttttacactg
aatctttgtcttatctattcctcaaattcttagttgatacattcactcct
ttgtcttttccatccacaaagactttgtgagaactttctctttttcaaga
atggtatggactagatatagaataatgagcaactgaagccccaagtctct
gaagaagttataaacagtggttaccatctatacttttagatggatatagt
cttaataaaatgctatctttcctttcctttttagtttctttctttcttgc
ttcttagtctgctcatcatctctcccctttgcactggatttagaaggtcc
tgtcttctttgcacaatctctatggatttcaacattcatacttgcatgct
gcatttatttaggatctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21934380_21935010
seq2: B6Ng01-149N17.b_48_681

seq1  GAATTCACTATGATTATATGAACTCATGTTTTTGAAGTGCCTAGAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGATTATATGAACTCATGTTTTTGAAGTGCCTAGAAAACC  50

seq1  TTCAGCACAATTACTATGCGACTTCAATTAATTATTATGAAGCAGGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACAATTACTATGCGACTTCAATTAATTATTATGAAGCAGGGGGA  100

seq1  TAAGAGAGATTCTATACTGATCTCTGTTCTCTTGGAAGATGAAGCTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGATTCTATACTGATCTCTGTTCTCTTGGAAGATGAAGCTTATA  150

seq1  AACTTCTTTGCATGTACAACCCCAGATTGTAAACACTGTGCTCTGGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTGCATGTACAACCCCAGATTGTAAACACTGTGCTCTGGATCA  200

seq1  GACTCTCATTCCAACTGATAATGGCTCTGAGCCTCCAGCAAGGATCATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCATTCCAACTGATAATGGCTCTGAGCCTCCAGCAAGGATCATGC  250

seq1  CTAGGGATCATTTCTTTCCAGAATTGAATACTAACTAACTTAGAGGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGATCATTTCTTTCCAGAATTGAATACTAACTAACTTAGAGGAAGC  300

seq1  AAGCCACACAAAGATACTATACATAAGATAAAATTTGAAAGAATGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACACAAAGATACTATACATAAGATAAAATTTGAAAGAATGAAAGG  350

seq1  AAATCAAGGCAAACAGGCATGAAGTATATCAGATAAAAATGTTTGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGGCAAACAGGCATGAAGTATATCAGATAAAAATGTTTGTTTGT  400

seq1  TTGTGTGTGTGTGTGTGTGTGTGTGTGTGATATGACTGTGTAAGTCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGTGTGTGTGTGTGTGTGTGTGATATGACTGTGTAAGTCCATG  450

seq1  TGTTCATACGTGTATAAATAGAGGCAAGAGCAGCATTCATGTCACATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATACGTGTATAAATAGAGGCAAGAGCAGCATTCATGTCACATGTC  500

seq1  TTCCTTTGTTGC-TTTTCATTTTGACTTGAGATGGGGTCTCTCACTGAAC  549
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGTTGCTTTTTCATTTTGACTTGAGATGGGGTCTCTCACTGAAC  550

seq1  TGGAAGCTTGCAATTTCAGCTAAGATAACGGCCCAGCTCACAGGATCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTTGCAATTTCAGCTAAGATAACGGCCCAGCTCACAGGATCTGT  600

seq1  CTGTC-AAATATA-TTACTGCATAACTATAAAAT  631
      ||||| ||||||| ||||||||||||||||||||
seq2  CTGTCAAAATATATTTACTGCATAACTATAAAAT  634

seq1: chr2_22041143_22042224
seq2: B6Ng01-149N17.g_67_1137 (reverse)

seq1  AGAAAGATCCTAAATAAATGCAGCCATTGGCAAGTATGAATGTTGAAATT  50
      ||||||||||||||||||||||| |||  ||||||||||||||||||| |
seq2  AGAAAGATCCTAAATAAATGCAG-CAT--GCAAGTATGAATGTTGAAA-T  46

seq1  CCATAGAGATTGTGCAAAGAAGACAGGA-CTTCTAAATCCAGTGCAAAGG  99
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CCATAGAGATTGTGCAAAGAAGACAGGACCTTCTAAATCCAGTGCAAA-G  95

seq1  GGGAGAGATGGATGAGCAGAACTAAGAAGCAAGAAAAGAAAAGAAAACTA  149
      ||||||||| ||||||||| ||||||||||||| |||||||   ||||| 
seq2  GGGAGAGAT-GATGAGCAG-ACTAAGAAGCAAG-AAAGAAA--GAAACT-  139

seq1  AAAAAGGAAAGGAAAGATAGCATTTTATTAAGACTATATCCATCTAAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAGGAAAGATAGCATTTTATTAAGACTATATCCATCTAAAAG  189

seq1  TATAGATGGTAACCACTGTTTATAACTTCTTTCAGAGACTTGGGGCTTCA  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATAGATGGTAACCACTGTTTATAACTTC-TTCAGAGACTTGGGGCTTCA  238

seq1  GTTGCTCATTATTCTATATCTAGTCCATACCATTCTTGAAAAAGAGAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCATTATTCTATATCTAGTCCATACCATTCTTGAAAAAGAGAAAG  288

seq1  TTCTCACAAAGTCTTTGTGGATGGAAAAGACAAAGGAGTGAATGTATCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACAAAGTCTTTGTGGATGGAAAAGACAAAGGAGTGAATGTATCAA  338

seq1  CTAAGAATTTGAGGAATAGATAAGACAAAGATTCAGTGTAAAACTTATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATTTGAGGAATAGATAAGACAAAGATTCAGTGTAAAACTTATTC  388

seq1  CATTAAACAGGATTTGTATTCAAAGCTGTCCTAAAAGACAATGAAGAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACAGGATTTGTATTCAAAGCTGTCCTAAAAGACAATGAAGAAAG  438

seq1  GTTTTGATGATGGGTCAGTGAGCTGGCTAGTTTTTTGTCAACTTGATACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATGATGGGTCAGTGAGCTGGCTAGTTTTTTGTCAACTTGATACA  488

seq1  AGCTAGGGTCATCTGGGAAGGGGAACCTTCAATTGAGAAAATGATCCCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGGTCATCTGGGAAGGGGAACCTTCAATTGAGAAAATGATCCCAT  538

seq1  CAGATTAACCTATGGACAAACCCTGAGGTTTGTCTTGGGCAGTTTCAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAACCTATGGACAAACCCTGAGGTTTGTCTTGGGCAGTTTCAGAA  588

seq1  AGCAACATGAGCAAGCCATGCAGAGAGAGCCAGTAAGCAGCATTCTTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATGAGCAAGCCATGCAGAGAGAGCCAGTAAGCAGCATTCTTCCA  638

seq1  CTGCCTCTGCTTCAATCCTTGCTTCTAGTTTCCTGCTATGAGTTCCAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCTTCAATCCTTGCTTCTAGTTTCCTGCTATGAGTTCCAGCC  688

seq1  AAGACTCCTCTTCTTAATGGACTACAGTGGTAAGCCAAAATAAATCAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTCTTCTTAATGGACTACAGTGGTAAGCCAAAATAAATCAAGT  738

seq1  TGTTTTTTATCAGGGTGTTTATTACAGCAATAGAAAGAAAATTAAGACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTATCAGGGTGTTTATTACAGCAATAGAAAGAAAATTAAGACAA  788

seq1  CAAACATCTAAAGTAATGCATAATCTTGGGTTTTGTGTCTCTGTAAAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATCTAAAGTAATGCATAATCTTGGGTTTTGTGTCTCTGTAAAGAT  838

seq1  AGCATTTAAATAGTTTCTAAATTTTAGCTTTTATAAACGCACAGAAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAAATAGTTTCTAAATTTTAGCTTTTATAAACGCACAGAAATTT  888

seq1  ACATTCCCATGTATGTAATGACATAATTTGGACAAAGCAGCATCTTATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCATGTATGTAATGACATAATTTGGACAAAGCAGCATCTTATGA  938

seq1  AATGGGAAAAATTTTTAACAACTACACATCCAATAAAAGGCTAATATCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAAAATTTTTAACAACTACACATCCAATAAAAGGCTAATATCCA  988

seq1  AAATATATAAAGAAGTAAAAAAATCGAATATTAAGAAAATGAATAACCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAAAGAAGTAAAAAAATCGAATATTAAGAAAATGAATAACCCA  1038

seq1  ATTAAAAATAAAACAGATCTAAACAGAGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAAAACAGATCTAAACAGAGAATTC  1071