BAC Information

Click to search

BAC

Clone NameB6Ng01-149P08
Chromosome2 (Build37)
Map Location 143,444,705 - 143,581,070
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149P08.bB6Ng01-149P08.g
ACCDH946158DH946159
length1,189794
definitionDH946158|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P08, 5' end.DH946159|Mus musculus domesticus DNA, BAC clone: B6Ng01-149P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,444,705 - 143,445,914)(143,580,278 - 143,581,070)
sequence
gaattcagtagcaacagtctacttccctgtcagtctgcagaccgcattcc
attttctcctgacatactgatatcgaggaacagcccagccctgaaaacat
tctgtttgttcctccctccatcgtgccttcttgatagcaatagtgaggac
tctttccagcacctcatacattctagactccatgattaactatattccta
gccttccttttatgttttagttgtagcgaaagtctcactaagtttttcca
gactggccttgaacttgggatccccctgcctcagtctgagtttgtagcct
tgtggtcttccctcctcttatgctggatttttccttctctagaagcactt
attctttttcttaagaaaagcacttatcgtttctttcagaaatgatatca
catttttaataatgctaactgtcagtcaatgaggatccccaacctaaaga
ccaaaacatttcagcaaattagaaatgttttgtgtattttcctctacctc
ctgatgtctgctctccttaagctacaaggtactccaggcctcatcgccat
acctctgagcttcctgctgtttttgtctttttctttcctcattctgttag
gtgagtttgccaaatccatccctctacctattaatctagttcttaacagc
atattttattagaaaattaaatttaggatagcagtgtttgtaataaaaca
cctgagataatcagcttaagatgaagaagagacatttattttgtctcatg
gtttccaggatggtggtctcttggttgtgtggccttagacctatgacatg
gcaatggcttggttgaggaagcctgctcaccttatggtgtccaggaagca
aaagagatagaaactagagtcccaagctcccttcggaagtgttctttcca
gtaaactaatttcttcctactagaccccacctcatccagttttcacatgt
cccagtagtgccacagctggagactatgcctgtgacacatggcttttggg
gcacattgacagcaaaactgaatttttactgtgagtcttttaccatgtgt
tctgctcatagtgtaatggaatacatccctcaacctcactgaaatatagc
aatgtcagaaaatctcgtcttatcttcaatggcttctgagggtcaacagg
tcatcgggagtctagagttcaggcattgctctgcagtgt
gaattcacagcatcctctctgccacataaatatcaccaattgcagggatg
acatttcagtggcaagtacctgtcaaagacatgctatgcaagaggggttt
ttatggacaacagcacagtaatggagttcagatccatggcatatgaccgg
atagtctcttaaagctgagtgaggtgagagagtactgaccaaacgtgtgc
tgcaaaccttgtgagtagcaggcagctctaaaaacagacagctgtcaagg
ccactcaacaatgtgcccgaaaaggtaggctacccttccagcaatcagct
aatcagtgttgactgaatgccagccaggaaaagaaccactgtaagatccc
gaggcctcccagcaaatcaattatatctgctgcgcacattattggtgcct
gttaaatatgtaatatttccttcctttcctgtaatttggattatcatttt
gttgggccaaaatgtcattctctgattgcaagctaggagaaaattatact
ttgcgaaattttcaactgtgtttcagaagtatctctggagctctaatatt
gcatatagttattgagaggtccacaaccactcaataactatgactatact
acaaagtgtggtcaagcacaggacagggcatattgaaagcagtgcttgtg
taggtatgaagcttgttttcacgaacagtccttggcttggagtcttaaat
atattctatcggaaatgcatacttgaagaaaaacagagttggtaaagatg
ctttagaatgctcaggaaaacccaggggtggggtgggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143444705_143445914
seq2: B6Ng01-149P08.b_47_1235

seq1  GAATTCAGTAGCAACAGTCTACTTCCCTGTCAGTCTGCAGACCGCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGCAACAGTCTACTTCCCTGTCAGTCTGCAGACCGCATTCC  50

seq1  ATTTTCTCCTGACATACTGATATCGAGGAACAGCCCAGCCCTGAAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTGACATACTGATATCGAGGAACAGCCCAGCCCTGAAAACAT  100

seq1  TCTGTTTGTTCCTCCCTCCATCGTGCCTTCTTGATAGCAATAGTGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTGTTCCTCCCTCCATCGTGCCTTCTTGATAGCAATAGTGAGGAC  150

seq1  TCTTTCCAGCACCTCATACATTCTAGACTCCATGATTAACTATATTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGCACCTCATACATTCTAGACTCCATGATTAACTATATTCCTA  200

seq1  GCCTTCCTTTTATGTTTTAGTTGTAGCGAAAGTCTCACTAAGTTTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTTTTATGTTTTAGTTGTAGCGAAAGTCTCACTAAGTTTTTCCA  250

seq1  GACTGGCCTTGAACTTGGGATCCCCCTGCCTCAGTCTGAGTTTGTAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCTTGAACTTGGGATCCCCCTGCCTCAGTCTGAGTTTGTAGCCT  300

seq1  TGTGGTCTTCCCTCCTCTTATGCTGGATTTTTCCTTCTCTAGAAGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTTCCCTCCTCTTATGCTGGATTTTTCCTTCTCTAGAAGCACTT  350

seq1  ATTCTTTTTCTTAAGAAAAGCACTTATCGTTTCTTTCAGAAATGATATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTCTTAAGAAAAGCACTTATCGTTTCTTTCAGAAATGATATCA  400

seq1  CATTTTTAATAATGCTAACTGTCAGTCAATGAGGATCCCCAACCTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAATAATGCTAACTGTCAGTCAATGAGGATCCCCAACCTAAAGA  450

seq1  CCAAAACATTTCAGCAAATTAGAAATGTTTTGTGTATTTTCCTCTACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACATTTCAGCAAATTAGAAATGTTTTGTGTATTTTCCTCTACCTC  500

seq1  CTGATGTCTGCTCTCCTTAAGCTACAAGGTACTCCAGGCCTCATCGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCTGCTCTCCTTAAGCTACAAGGTACTCCAGGCCTCATCGCCAT  550

seq1  ACCTCTGAGCTTCCTGCTGTTTTTGTCTTTTTCTTTCCTCATTCTGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGCTTCCTGCTGTTTTTGTCTTTTTCTTTCCTCATTCTGTTAG  600

seq1  GTGAGTTTGCCAAATCCATCCCTCTACCTATTAATCTAGTTCTTAACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTGCCAAATCCATCCCTCTACCTATTAATCTAGTTCTTAACAGC  650

seq1  ATATTTTATTAGAAAATTAAATTTAGGATAGCAGTGTTTGTAATAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTAGAAAATTAAATTTAGGATAGCAGTGTTTGTAATAAAACA  700

seq1  CCTGAGATAATCAGCTTAAGATGAAGAAGAGACATTTATTTTGTCTCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATAATCAGCTTAAGATGAAGAAGAGACATTTATTTTGTCTCATG  750

seq1  GTTTCCAGGATGGTGGTCTCTTGGTTGTGTGGCCTTAGACCTATGACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGGATGGTGGTCTCTTGGTTGTGTGGCCTTAGACCTATGACATG  800

seq1  GCAATGGCTTGGTTGAGGAAGCCTGCTCACCTTATGGTGTCCAGGAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTTGGTTGAGGAAGCCTGCTCACCTTATGGTGTCCAGGAAGCA  850

seq1  AAAGAGATAGAAACTAGAGTCCCAAGCTCCCTTCGGAAGTGTTC-TTCCA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGAGATAGAAACTAGAGTCCCAAGCTCCCTTCGGAAGTGTTCTTTCCA  900

seq1  GTAAACTAATTTCCTCCTACTAGACCCCACCTCATCCAGTTTTCACCATG  949
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GTAAACTAATTTCTTCCTACTAGACCCCACCTCATCCAGTTTTCA-CATG  949

seq1  TCCCAGTAGTGCCACAGGCTGGAGACTATGCCTGTGACACATGGCTTTTG  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCCAGTAGTGCCACA-GCTGGAGACTATGCCTGTGACACATGGCTTTTG  998

seq1  GGGCACATTGACAAGCAAAACTGAAATATTTACTGTGAGTCTTTTACCAT  1049
      |||||||||||| |||||||||| ||| ||||||||||||||||||||||
seq2  GGGCACATTGAC-AGCAAAACTG-AATTTTTACTGTGAGTCTTTTACCAT  1046

seq1  GTGTTTCTTGCCTCATAGTGTAATGGAAATACATCCCTCAAACTTCACTG  1099
      ||| ||||   ||||||||||||||| |||||||||||| ||| ||||||
seq2  GTG-TTCT--GCTCATAGTGTAATGG-AATACATCCCTC-AACCTCACTG  1091

seq1  ATA-ATAGCCAATGTCATGAAAATCTTCTCTTAATCTTTCAATGGCTTCT  1148
      | | |||| |||||||| ||||||||  |||| ||| |||||||||||||
seq2  AAATATAG-CAATGTCA-GAAAATCTCGTCTT-ATC-TTCAATGGCTTCT  1137

seq1  GTGAGGTCCACACAGGTGCCATCGGGAGTTCTAGATGTCAGGCATTGTCT  1198
      | | ||||   ||||||  ||||||||| ||||||  ||||||||||   
seq2  GAG-GGTC--AACAGGT--CATCGGGAG-TCTAGAGTTCAGGCATTG---  1178

seq1  TCAGTGCAGTGT  1210
       |  ||||||||
seq2  -CTCTGCAGTGT  1189

seq1: chr2_143580278_143581070
seq2: B6Ng01-149P08.g_69_862 (reverse)

seq1  CCCCACCCCCACCCCACCCCTGGGTTTTCCTGAGCATTCTAAAGCATC-T  49
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCCACCCCCACCCCACCCCTGGGTTTTCCTGAGCATTCTAAAGCATCTT  50

seq1  TACCAACTCTGTTTTTCTTCAAGTATGCATTTCCGATAGAATATATTTAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTCTGTTTTTCTTCAAGTATGCATTTCCGATAGAATATATTTAA  100

seq1  GACTCCAAGCCAAGGACTGTTCGTGAAAACAAGCTTCATACCTACACAAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAAGCCAAGGACTGTTCGTGAAAACAAGCTTCATACCTACACAAG  150

seq1  CACTGCTTTCAATATGCCCTGTCCTGTGCTTGACCACACTTTGTAGTATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTTCAATATGCCCTGTCCTGTGCTTGACCACACTTTGTAGTATA  200

seq1  GTCATAGTTATTGAGTGGTTGTGGACCTCTCAATAACTATATGCAATATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTTATTGAGTGGTTGTGGACCTCTCAATAACTATATGCAATATT  250

seq1  AGAGCTCCAGAGATACTTCTGAAACACAGTTGAAAATTTCGCAAAGTATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCCAGAGATACTTCTGAAACACAGTTGAAAATTTCGCAAAGTATA  300

seq1  ATTTTCTCCTAGCTTGCAATCAGAGAATGACATTTTGGCCCAACAAAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTAGCTTGCAATCAGAGAATGACATTTTGGCCCAACAAAATG  350

seq1  ATAATCCAAATTACAGGAAAGGAAGGAAATATTACATATTTAACAGGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCAAATTACAGGAAAGGAAGGAAATATTACATATTTAACAGGCAC  400

seq1  CAATAATGTGCGCAGCAGATATAATTGATTTGCTGGGAGGCCTCGGGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGTGCGCAGCAGATATAATTGATTTGCTGGGAGGCCTCGGGATC  450

seq1  TTACAGTGGTTCTTTTCCTGGCTGGCATTCAGTCAACACTGATTAGCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGGTTCTTTTCCTGGCTGGCATTCAGTCAACACTGATTAGCTGA  500

seq1  TTGCTGGAAGGGTAGCCTACCTTTTCGGGCACATTGTTGAGTGGCCTTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAAGGGTAGCCTACCTTTTCGGGCACATTGTTGAGTGGCCTTGA  550

seq1  CAGCTGTCTGTTTTTAGAGCTGCCTGCTACTCACAAGGTTTGCAGCACAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCTGTTTTTAGAGCTGCCTGCTACTCACAAGGTTTGCAGCACAC  600

seq1  GTTTGGTCAGTACTCTCTCACCTCACTCAGCTTTAAGAGACTATCCGGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTCAGTACTCTCTCACCTCACTCAGCTTTAAGAGACTATCCGGTC  650

seq1  ATATGCCATGGATCTGAACTCCATTACTGTGCTGTTGTCCATAAAAACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCATGGATCTGAACTCCATTACTGTGCTGTTGTCCATAAAAACCC  700

seq1  CTCTTGCATAGCATGTCTTTGACAGGTACTTGCCACTGAAATGTCATCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATAGCATGTCTTTGACAGGTACTTGCCACTGAAATGTCATCCC  750

seq1  TGCAATTGGTGATATTTATGTGGCAGAGAGGATGCTGTGAATTC  793
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGGTGATATTTATGTGGCAGAGAGGATGCTGTGAATTC  794