BAC Information

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BAC

Clone NameB6Ng01-150D05
Chromosome2 (Build37)
Map Location 162,419,922 - 162,559,963
singlet/doubletdoublet
Overlap genePtprt, LOC100043895, LOC100043896
Upstream genenone
Downstream geneLOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150D05.bB6Ng01-150D05.g
ACCDH946342DH946343
length983152
definitionDH946342|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D05, 5' end.DH946343|Mus musculus domesticus DNA, BAC clone: B6Ng01-150D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,419,922 - 162,420,726)(162,559,812 - 162,559,963)
sequence
gaattcttctatattaattattaaaggcaaattatgttgttgaaagagga
ggccatcaaaagatggtggtttaatgaaataggttagggaggcattctga
atcggtaattgatttaaaaagtgaaaggcattggggaggtttgtcaaaaa
tggaattaaataaccaagaactgtgaacctctacattgtgtgttccaggg
agctgaaaggaaggcagttgagaatctgacagaatctgacctagtctgaa
gcaaggtgtgatgggtaatttggctactaacttgattgggttaagaaata
agcacaccgactcgagccccgggctaccttgccagcagagtcttgcccaa
cacccgcaagggcccacacgggactccccacgggaccctaagacctctgg
tgagtggaccacagtgcctgccccaatccaatcgcgcggaactcgagact
gcggtacatagggaagcaggctacccgggcctgatctggggcacaagtcc
cttccgctcgactcgagactcgagccccgggctaccttgccagcagagtc
ttgcccaacacccgcaagggcccacacgggactccccacgggaccctaag
acctctggtgagtggaccacagtgcctgccccaatccaatcgcgcggaac
ttgagactgcggtacatagggaagcaggctacccgggcctgatctggggc
acaagtcccttccgctcgactcgagactcgagccccgggctaccttgcca
gcagagtcttgcccaacacccgcaagggcccacacgggactccccacggg
accctaagacctctggtgagtggaccacagtgcctgccccaatccaatcg
cgcggaacttgagactgcggtacatagggaagcaggctacccgggcctga
tctggggcacaagtcccttccgctcgactccagactcgagccccgggcta
ccttgccagcagagtctgcccaacacccgcaag
atagtctgtcgattaggggatcttttcactctgcaggaacaagagggagc
ccaggcaggtgtgggtgggctctgtgtgtacagaggttagtagtccttca
ggaactaacgaaccatttaggtatgtatgtattttggagggaggggagta
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162419922_162420726
seq2: B6Ng01-150D05.b_42_846

seq1  GAATTCTTCTATATTAATTATTAAAGGCAAATTATGTTGTTGAAAGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTATATTAATTATTAAAGGCAAATTATGTTGTTGAAAGAGGA  50

seq1  GGCCATCAAAAGATGGTGGTTTAATGAAATAGGTTAGGGAGGCATTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCAAAAGATGGTGGTTTAATGAAATAGGTTAGGGAGGCATTCTGA  100

seq1  ATCGGTAATTGATTTAAAAAGTGAAAGGCATTGGGGAGGTTTGTCAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTAATTGATTTAAAAAGTGAAAGGCATTGGGGAGGTTTGTCAAAAA  150

seq1  TGGAATTAAATAACCAAGAACTGTGAACCTCTACATTGTGTGTTCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAAATAACCAAGAACTGTGAACCTCTACATTGTGTGTTCCAGGG  200

seq1  AGCTGAAAGGAAGGCAGTTGAGAATCTGACAGAATCTGACCTAGTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAGGAAGGCAGTTGAGAATCTGACAGAATCTGACCTAGTCTGAA  250

seq1  GCAAGGTGTGATGGGTAATTTGGCTACTAACTTGATTGGGTTAAGAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTGTGATGGGTAATTTGGCTACTAACTTGATTGGGTTAAGAAATA  300

seq1  AGCACACCGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAA  350

seq1  CACCCGCAAGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGCAAGGGCCCACACGGGACTCCCCACGGGACCCTAAGACCTCTGG  400

seq1  TGAGTGGACCACAGTGCCTGCCCCAATCCAATCGCGCGGAACTCGAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGACCACAGTGCCTGCCCCAATCCAATCGCGCGGAACTCGAGACT  450

seq1  GCGGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGTCC  500

seq1  CTTCCGCTCGACTCGAGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCTCGACTCGAGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTC  550

seq1  TTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCCACGGGACCCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCCACGGGACCCTAAG  600

seq1  ACCTCTGGTGAGTGGACCACAGTGCCTGCCCCAATCCAATCGCGCGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGTGAGTGGACCACAGTGCCTGCCCCAATCCAATCGCGCGGAAC  650

seq1  TTGAGACTGCGGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTGCGGTACATAGGGAAGCAGGCTACCCGGGCCTGATCTGGGGC  700

seq1  ACAAGTCCCTTCCGCTCGACTCGAGACTCGAGCCCCGGGCTACCTTGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCCTTCCGCTCGACTCGAGACTCGAGCCCCGGGCTACCTTGCCA  750

seq1  GCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCCACGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCCACGGG  800

seq1  ACCCT  805
      |||||
seq2  ACCCT  805

seq1: chr2_162559812_162559963
seq2: B6Ng01-150D05.g_74_225 (reverse)

seq1  ACTACTCCCCTCCCTCCAAAATACATACATACCTAAATGGTTCGTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCCCCTCCCTCCAAAATACATACATACCTAAATGGTTCGTTAGTT  50

seq1  CCTGAAGGACTACTAACCTCTGTACACACAGAGCCCACCCACACCTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGACTACTAACCTCTGTACACACAGAGCCCACCCACACCTGCCT  100

seq1  GGGCTCCCTCTTGTTCCTGCAGAGTGAAAAGATCCCCTAATCGACAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCTCTTGTTCCTGCAGAGTGAAAAGATCCCCTAATCGACAGACT  150

seq1  AT  152
      ||
seq2  AT  152