BAC Information

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BAC

Clone NameB6Ng01-150F07
Chromosome2 (Build37)
Map Location 146,214,508 - 146,372,950
singlet/doubletdoublet
Overlap geneA230067G21Rik
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150F07.bB6Ng01-150F07.g
ACCDH946437DH946438
length1,1541,138
definitionDH946437|Mus musculus domesticus DNA, BAC clone: B6Ng01-150F07, 5' end.DH946438|Mus musculus domesticus DNA, BAC clone: B6Ng01-150F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,371,762 - 146,372,950)(146,214,508 - 146,215,654)
sequence
gaattcaagcaagacttcaatccggacgacctggagcagtgattggcttt
gggactggagcatgtcagccttatttcatggagtactcatcctccaaatg
tgtgcacattccatcctgagggcagccagggggctggaggtgagcctgtt
tcctgcagactaatgtttctcaaggggcgaccatttcatgtgtctaccca
cgtgccactgtcagtccagccagaaggccacctcctaaaatcggtgctgg
gagactaattggtttaccaagaattattaaaaatgttagtgtattttaga
aaacaggagcacttactgcatttcctgctgtttcaggataagaacacaga
caaaatgactccaaagtattagttaaaagtgagttttaatctgatcggtt
gggattttgtttttcataaaccagattacataatatgctctctctgccac
ctttaagcctgcttggtccacgccaagctgtattcgtgctaatcgcttgc
gacacagtaccagagtagactccctaccataccgattttagttggcagaa
ctcagctcttgagactccgtgctctgtccccattagtgccgcgatattgc
agagcgtcaccctcttaccctctgaagcagcactacatttgtcacaaacc
agtgagtcccatggcgatgggagaaagtaataagatgctgttaagagctc
tgaagttctgaggtcctgggtcacatgccaagcatctcggaggaacattc
atttaatcctccagtctctcttagctgccgaggccaggctgcatccagag
ggccagcagggagttcactaagggaacatttacagaggtgagggcagagt
gccgcgacccacgtgggatggtgagagccatagcaacaatgggaactttt
cagacatataagacagtaggtagggtcaggaaaaagtaagttgctgggcg
tctctctgcttcagcagctcccattggccacacccactagcagcagaggg
ctctggggatattacatcagagagtcatgctctgctagatatgaaaaaaa
tggaccatgaaagcagcgagaaaacgagcataacatatggtcactgtttc
atctttacttaaaactcagcagagaatggcaacctggtcgagggtgggct
aatt
gaattcttggtaaagaaattaagattaaaaaattgtttagaatttgatgg
aacaggaaaagataatctgttaaggtcaaacacttgattctttcaaattg
aatgcccaacaagaaataatgtacaatggggtgatcatgtgaagatttta
tgaagcaggcaagatgagggagattttgaatacgatgagtaccatgatag
caggcgacccagagtcttagggtacagaaacatctgtgttggttgggtgg
tttactgagcatagaattcgcatactaagaagtttcaccccctttaggtc
taaggaatacatgcagccatgtaatagtcaccatttatccccaataacca
caacagcattcacttccatctgtctgaggaacacccctttcagttagccc
catccctcatcctaagcattttatatgcactgctttgtgttctctttcag
gtctgcctcttctagtatctcatttaaatggaattctagtaatcagcctt
tctccccagtttcttttacttcgaggaacacacttgagattcttccataa
gattgtgtacattaggagtctgttcctctgattgccgattaacattccat
tttgagatatatcaaagttcatcttttcttctgatgaagattagttaaat
tagttcctattttgagtaactaggaataaaactgccaggaccattcacat
gcatgtatttgtgtgaacatatactgacatttctctttggtaaataactg
gagtgagatcctgtgtatcctaagtgcatgctcagtacatatttcgagtg
aagaaaagagaccgagtccattttctgaagtggcatttccatgaaccagc
ataggcagcatcaccctgagtggagtacaaaagtgccacttgttcccctc
agtaaagggtggtataatgtgatattttcatttgcatttctctagtgagt
aaatatattagcatgcactggcatgtggttcatgcctggaaagagtgagc
agtagattctgttgcagtgtgggtagctatcaaaacctgtgtggcaaagc
catagactgagggactgtgtagcagtccaagcccaagcatatcctccaca
cacagcaatgctgagtgaaatgtctctatatctctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_146371762_146372950
seq2: B6Ng01-150F07.b_47_1200 (reverse)

seq1  AATTAGCCCAACACTCTGACCCCAGCTGCCCCATCTCTTGCTGAGTATTT  50
      ||||||||| || ||| ||  |||| |  ||  |||| |||||||  |||
seq2  AATTAGCCC-ACCCTC-GA--CCAGGTTGCCATTCTC-TGCTGAG--TTT  43

seq1  TAGGTTAAGAATGAAAACAGTGACCACTATGTTATGCTCGTTTT-TCTCT  99
      || || ||| ||| |||||||||||| ||||||||||||||||| || ||
seq2  TAAGTAAAG-ATG-AAACAGTGACCA-TATGTTATGCTCGTTTTCTCGCT  90

seq1  GCTTGCTTTTCATGGGTCCAATTTTTTTTTTCATAATCTATGCCAAGAGC  149
      ||     |||||| ||||||    |||||||||| ||||| ||  |||||
seq2  GC-----TTTCAT-GGTCCA----TTTTTTTCAT-ATCTA-GC--AGAGC  126

seq1  ATGAACTCTCTGATTGGTTAATATTCCCCAGAGCCCTCTGCCTGCTAGTT  199
      ||| ||||||||||    ||||| |||||||||||||||| ||||||| |
seq2  ATG-ACTCTCTGAT---GTAATA-TCCCCAGAGCCCTCTG-CTGCTAG-T  169

seq1  GGGTGTGGCCAATGGGAGCTGCCTGAAGCAGGAGAGACGCCCAGCAACCT  249
      ||||||||||||||||||||| |||||||| |||||||||||||||| ||
seq2  GGGTGTGGCCAATGGGAGCTG-CTGAAGCA-GAGAGACGCCCAGCAA-CT  216

seq1  TACCTTTTTCCTGACCCTACCTACTGTCTTATATGTCCTGAAAAGTTCCC  299
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TA-CTTTTTCCTGACCCTACCTACTGTCTTATATGT-CTGAAAAGTTCCC  264

seq1  ATTGTTGCTATGGCTCTCACCATCCCACGTGGGTCGCGGCACTCTGCCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGCTATGGCTCTCACCATCCCACGTGGGTCGCGGCACTCTGCCCT  314

seq1  CACCTCTGTAAATGTTCCCTTAGTGAACTCCCTGCTGGCCCTCTGGATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGTAAATGTTCCCTTAGTGAACTCCCTGCTGGCCCTCTGGATGC  364

seq1  AGCCTGGCCTCGGCAGCTAAGAGAGACTGGAGGATTAAATGAATGTTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCCTCGGCAGCTAAGAGAGACTGGAGGATTAAATGAATGTTCCT  414

seq1  CCGAGATGCTTGGCATGTGACCCAGGACCTCAGAACTTCAGAGCTCTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGATGCTTGGCATGTGACCCAGGACCTCAGAACTTCAGAGCTCTTAA  464

seq1  CAGCATCTTATTACTTTCTCCCATCGCCATGGGACTCACTGGTTTGTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTTATTACTTTCTCCCATCGCCATGGGACTCACTGGTTTGTGAC  514

seq1  AAATGTAGTGCTGCTTCAGAGGGTAAGAGGGTGACGCTCTGCAATATCGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGTGCTGCTTCAGAGGGTAAGAGGGTGACGCTCTGCAATATCGC  564

seq1  GGCACTAATGGGGACAGAGCACGGAGTCTCAAGAGCTGAGTTCTGCCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAATGGGGACAGAGCACGGAGTCTCAAGAGCTGAGTTCTGCCAAC  614

seq1  TAAAATCGGTATGGTAGGGAGTCTACTCTGGTACTGTGTCGCAAGCGATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCGGTATGGTAGGGAGTCTACTCTGGTACTGTGTCGCAAGCGATT  664

seq1  AGCACGAATACAGCTTGGCGTGGACCAAGCAGGCTTAAAGGTGGCAGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGAATACAGCTTGGCGTGGACCAAGCAGGCTTAAAGGTGGCAGAGA  714

seq1  GAGCATATTATGTAATCTGGTTTATGAAAAACAAAATCCCAACCGATCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATATTATGTAATCTGGTTTATGAAAAACAAAATCCCAACCGATCAG  764

seq1  ATTAAAACTCACTTTTAACTAATACTTTGGAGTCATTTTGTCTGTGTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTCACTTTTAACTAATACTTTGGAGTCATTTTGTCTGTGTTCT  814

seq1  TATCCTGAAACAGCAGGAAATGCAGTAAGTGCTCCTGTTTTCTAAAATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGAAACAGCAGGAAATGCAGTAAGTGCTCCTGTTTTCTAAAATAC  864

seq1  ACTAACATTTTTAATAATTCTTGGTAAACCAATTAGTCTCCCAGCACCGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACATTTTTAATAATTCTTGGTAAACCAATTAGTCTCCCAGCACCGA  914

seq1  TTTTAGGAGGTGGCCTTCTGGCTGGACTGACAGTGGCACGTGGGTAGACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAGGTGGCCTTCTGGCTGGACTGACAGTGGCACGTGGGTAGACA  964

seq1  CATGAAATGGTCGCCCCTTGAGAAACATTAGTCTGCAGGAAACAGGCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGGTCGCCCCTTGAGAAACATTAGTCTGCAGGAAACAGGCTCA  1014

seq1  CCTCCAGCCCCCTGGCTGCCCTCAGGATGGAATGTGCACACATTTGGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCCCCCTGGCTGCCCTCAGGATGGAATGTGCACACATTTGGAGG  1064

seq1  ATGAGTACTCCATGAAATAAGGCTGACATGCTCCAGTCCCAAAGCCAATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACTCCATGAAATAAGGCTGACATGCTCCAGTCCCAAAGCCAATC  1114

seq1  ACTGCTCCAGGTCGTCCGGATTGAAGTCTTGCTTGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCAGGTCGTCCGGATTGAAGTCTTGCTTGAATTC  1154

seq1: chr2_146214508_146215654
seq2: B6Ng01-150F07.g_67_1204

seq1  GAATTCTTGGTAAAGAAATTAAGATTAAAAAATTGTTTAGAATTTGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTAAAGAAATTAAGATTAAAAAATTGTTTAGAATTTGATGG  50

seq1  AACAGGAAAAGATAATCTGTTAAGGTCAAACACTTGATTCTTTCAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAAGATAATCTGTTAAGGTCAAACACTTGATTCTTTCAAATTG  100

seq1  AATGCCCAACAAGAAATAATGTACAATGGGGTGATCATGTGAAGATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAACAAGAAATAATGTACAATGGGGTGATCATGTGAAGATTTTA  150

seq1  TGAAGCAGGCAAGATGAGGGAGATTTTGAATACGATGAGTACCATGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGCAAGATGAGGGAGATTTTGAATACGATGAGTACCATGATAG  200

seq1  CAGGCGACCCAGAGTCTTAGGGTACAGAAACATCTGTGTTGGTTGGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGACCCAGAGTCTTAGGGTACAGAAACATCTGTGTTGGTTGGGTGG  250

seq1  TTTACTGAGCATAGAATTCGCATACTAAGAAGTTTCACCCCCTTTAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAGCATAGAATTCGCATACTAAGAAGTTTCACCCCCTTTAGGTC  300

seq1  TAAGGAATACATGCAGCCATGTAATAGTCACCATTTATCCCCAATAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATACATGCAGCCATGTAATAGTCACCATTTATCCCCAATAACCA  350

seq1  CAACAGCATTCACTTCCATCTGTCTGAGGAACACCCCTTTCAGTTAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCATTCACTTCCATCTGTCTGAGGAACACCCCTTTCAGTTAGCCC  400

seq1  CATCCCTCATCCTAAGCATTTTATATGCACTGCTTTGTGTTCTCTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCATCCTAAGCATTTTATATGCACTGCTTTGTGTTCTCTTTCAG  450

seq1  GTCTGCCTCTTCTAGTATCTCATTTAAATGGAATTCTAGTAATCAGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTCTTCTAGTATCTCATTTAAATGGAATTCTAGTAATCAGCCTT  500

seq1  TCTCCCCAGTTTCTTTTACTTCGAGGAACACACTTGAGATTCTTCCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGTTTCTTTTACTTCGAGGAACACACTTGAGATTCTTCCATAA  550

seq1  GATTGTGTACATTAGGAGTCTGTTCCTCTGATTGCCGATTAACATTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTACATTAGGAGTCTGTTCCTCTGATTGCCGATTAACATTCCAT  600

seq1  TTTGAGATATATCAAAGTTCATCTTTTCTTCTGATGAAGATTAGTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATATATCAAAGTTCATCTTTTCTTCTGATGAAGATTAGTTAAAT  650

seq1  TAGTTCCTATTTTGAGTAACTAGGAATAAAACTGCCAGGACCATTCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCTATTTTGAGTAACTAGGAATAAAACTGCCAGGACCATTCACAT  700

seq1  GCATGTATTTGTGTGAACATATACTGACATTTCTCTTTGGTAAATAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTATTTGTGTGAACATATACTGACATTTCTCTTTGGTAAATAACTG  750

seq1  GAGTGAGATCCTGTGTATCCTAAGTGCATGCTCAGTACATA-TTCGAGTG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGTGAGATCCTGTGTATCCTAAGTGCATGCTCAGTACATATTTCGAGTG  800

seq1  AAGAAAAGAGACCGAGTCCATTTTCTGAAGTGGCATTTCCATGAACCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAGACCGAGTCCATTTTCTGAAGTGGCATTTCCATGAACCAGC  850

seq1  ATAGGCAGCATCACCCTGAGTGGAGTACAAAAGTGCCACTTGTTCCCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGCATCACCCTGAGTGGAGTACAAAAGTGCCACTTGTTCCCCTC  900

seq1  AGTAAAGGGTGGTATAATGTGATATTTTCATTTGCATTTCTCTAGTGAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTAAAGGGTGGTATAATGTGATATTTTCATTTGCATTTCTCTAGTGAG-  949

seq1  TAAATATATTAAGCATGCACTGGCATGTGGTTCATGCCTGGACAGAGTGA  999
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TAAATATATT-AGCATGCACTGGCATGTGGTTCATGCCTGGAAAGAGTGA  998

seq1  GCAGGTAGATTCTGTTGCAGTGTGGGTAGCTTATCAAAACCTGTGTGGGC  1049
      ||| |||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GCA-GTAGATTCTGTTGCAGTGTGGGTAGC-TATCAAAACCTGTGT-GGC  1045

seq1  AAAGGCCATAGGACAGAGGGACTGTGTTAGCAGTCCAAAGCCCAAGCATA  1099
      ||| |||||| ||| ||||||||||| ||||||||| |||||||||||||
seq2  AAA-GCCATA-GACTGAGGGACTGTG-TAGCAGTCC-AAGCCCAAGCATA  1091

seq1  TCCTCCAACACACAGGCAATGCTGAAGTGAAATGTCTC-ATA-CTCTGAA  1147
      |||||| ||||||| ||||||||| ||||||||||||| ||| |||||||
seq2  TCCTCC-ACACACA-GCAATGCTG-AGTGAAATGTCTCTATATCTCTGAA  1138