BAC Information

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BAC

Clone NameB6Ng01-150F14
Chromosome2 (Build37)
Map Location 56,335,521 - 56,336,614
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150F14.bB6Ng01-150F14.g
ACCDH946451DH946452
length1,1541,081
definitionDH946451|Mus musculus domesticus DNA, BAC clone: B6Ng01-150F14, 5' end.DH946452|Mus musculus domesticus DNA, BAC clone: B6Ng01-150F14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagaacctgaaaaaatg
ttcaacatcatcaatcatcagagaaatgcaaatcaaaactaccctgagat
tccacctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgtaagcttgtataacccctctggaaatcagtctggcagttcctca
gaaaattggacatagtactactggaggattccgtaatacctctcctgggc
atatatccagaagatgttccaacctgtaagtaggacacatgctccactat
gttcatagcagccttatttataatagccagaagcgaaaaagaaccaagat
gcccctcaagagaagaatggatacagaaaatgtggtaatttacacaatag
tgtactactcttaaaaagaatgagtttatgaaattcctaggcaaatagat
ggacctggagggcatcatcctgagtgaggtaacccaatcacaaagaactc
acacaatatgtactcactgataagtggatattatcccagaaacttaggat
acccaagatataagatacaatttgctaaatgcaagaaactcaagaagaat
gaaaaccaaagtgtgattactttgccccttcttagaattgggaacaaaac
acccatggaaggagttacagagacaaaatttggagttttgactaaaggat
ggaccatctagagactgccatatccaggggtccatcccataatcagcttc
caaactctgacactattgcaagattttgctgaaaggacccagatatagct
gtctcttgtgagactatgcagcggcctagcaaacacagaagtggatgctc
atagtctgcttggatggatcacgggctcccagtggagaagctagagaaag
taccaaggagctaaagggatctgcaatcctataggtggatcatcaatata
ctaccagtaccccctgagctagtgtctctagctgcatatgaatcagagat
gctagtcggcattcagtggaaagaaggcccattgcgtgcaaactttaatg
cctcagtacagggaatgacagggcagaaattaggagtggggtgggtgggt
aaat
gaattcactctgtagaccaggctggcctcaaactcagaaattcacctgct
tctgcctcctaagtgctgggattaatagcatgcgccaccactgcccggct
aggtactattacttaaatgaataaaaatattgagatactgatataaagat
agtaatgtgattttggaatagctttattcacggtttttatactcagtatt
attgtagttattatatagttaatactgcaactgtataattggatgtataa
ttgttgattggatggtttaaaagagaggaggaggggtcaaacaaaatcag
agatgaaaagaaaaatattacccactaacaccatacaactaccaaaagat
catttgaaattactatgaaatgtcatatacaaacatatttgtaaatttgt
ttaaaagtataatttgtccttatacttagttcttatcattcattaaacac
ataatcacagtataattataacaaaacactaaaagcctaatcataaacaa
tgaggaaatctctacaatatactaaagtcagctgcaccaactttgttacc
ttaagagatgaccttattcagtactgaaacaaaatggtattccataattc
acactatctccatcctttcctgcccaagaatcacagcttgctcatgtttg
tgtccagaagtttctgatatgtactgggactcagtgatgtgactgaagag
atgttttgaaactatgataattatgaccaaaatgtagagaagaaaagaga
tttatagagcaagatgcttcttccattagcacaggaaactcagccttcag
cctccacttggaagaggtaggcttatagatttgcatcaccatgattggcc
tttattcctttaattttaatataaatgactagcatttaatcaagagtgtt
gctgttccttatatatgtagttaatgcatatacactatgaaacaatctta
tcctcatttcaagagatatgaactctcactcagactctcatccccccacc
cccacccaccttttcttctttgacaacaccagggcattttttcttttgat
gttcaggttgcaatagaataagtcttttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56335521_56336614
seq2: B6Ng01-150F14.g_68_1148 (reverse)

seq1  TTTAAAAGGACTATTCTATTGCAAAACTGAACTATCAGAAGAAAAAAATG  50
      ||||||||   ||||||||||| || |||||| |||| ||| ||||||||
seq2  TTTAAAAGACTTATTCTATTGC-AACCTGAAC-ATCAAAAG-AAAAAATG  47

seq1  CCCTGGGTGTTGTCAAAGAAGAAAAGGTGGGGTGGGGGTGGGGGGATGAG  100
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCCT-GGTGTTGTCAAAGAAGAAAAGGT-GGGTGGGGGTGGGGGGATGAG  95

seq1  AAGTCTGAGTGAAGAGTTCATTATCTTCTTGAAATGAGGATAAGATTGTT  150
       |||||||||| |||||||| |||| |||||||||||||||||||||| |
seq2  -AGTCTGAGTG-AGAGTTCA-TATC-TCTTGAAATGAGGATAAGATTG-T  140

seq1  TTCATAGTGTATATTGCATTAAACTACATATATAAGGAACAGCAACACTC  200
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TTCATAGTGTATA-TGCATT-AACTACATATATAAGGAACAGCAACACTC  188

seq1  TTTGATTAAATGCTAGTCATTTATATTAAAATTAAAGGAATAAAGGCCAA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTGATTAAATGCTAGTCATTTATATTAAAATTAAAGGAATAAAGGCCAA  237

seq1  TCATGGTGATGCAAATCTATAAGCCTACCTCTTCCAAGTGGAGGCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGATGCAAATCTATAAGCCTACCTCTTCCAAGTGGAGGCTGAAG  287

seq1  GCTGAGTTTCCTGTGCTAATGGAAGAAGCATCTTGCTCTATAAATCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTTCCTGTGCTAATGGAAGAAGCATCTTGCTCTATAAATCTCTT  337

seq1  TTCTTCTCTACATTTTGGTCATAATTATCATAGTTTCAAAACATCTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTACATTTTGGTCATAATTATCATAGTTTCAAAACATCTCTTC  387

seq1  AGTCACATCACTGAGTCCCAGTACATATCAGAAACTTCTGGACACAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATCACTGAGTCCCAGTACATATCAGAAACTTCTGGACACAAACA  437

seq1  TGAGCAAGCTGTGATTCTTGGGCAGGAAAGGATGGAGATAGTGTGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGCTGTGATTCTTGGGCAGGAAAGGATGGAGATAGTGTGAATTA  487

seq1  TGGAATACCATTTTGTTTCAGTACTGAATAAGGTCATCTCTTAAGGTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATACCATTTTGTTTCAGTACTGAATAAGGTCATCTCTTAAGGTAAC  537

seq1  AAAGTTGGTGCAGCTGACTTTAGTATATTGTAGAGATTTCCTCATTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGTGCAGCTGACTTTAGTATATTGTAGAGATTTCCTCATTGTTT  587

seq1  ATGATTAGGCTTTTAGTGTTTTGTTATAATTATACTGTGATTATGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGGCTTTTAGTGTTTTGTTATAATTATACTGTGATTATGTGTTT  637

seq1  AATGAATGATAAGAACTAAGTATAAGGACAAATTATACTTTTAAACAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGATAAGAACTAAGTATAAGGACAAATTATACTTTTAAACAAAT  687

seq1  TTACAAATATGTTTGTATATGACATTTCATAGTAATTTCAAATGATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATATGTTTGTATATGACATTTCATAGTAATTTCAAATGATCTTT  737

seq1  TGGTAGTTGTATGGTGTTAGTGGGTAATATTTTTCTTTTCATCTCTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGTATGGTGTTAGTGGGTAATATTTTTCTTTTCATCTCTGATT  787

seq1  TTGTTTGACCCCTCCTCCTCTCTTTTAAACCATCCAATCAACAATTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGACCCCTCCTCCTCTCTTTTAAACCATCCAATCAACAATTATAC  837

seq1  ATCCAATTATACAGTTGCAGTATTAACTATATAATAACTACAATAATACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTATACAGTTGCAGTATTAACTATATAATAACTACAATAATACT  887

seq1  GAGTATAAAAACCGTGAATAAAGCTATTCCAAAATCACATTACTATCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAAAACCGTGAATAAAGCTATTCCAAAATCACATTACTATCTTT  937

seq1  ATATCAGTATCTCAATATTTTTATTCATTTAAGTAATAGTACCTAGCCGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTATCTCAATATTTTTATTCATTTAAGTAATAGTACCTAGCCGG  987

seq1  GCAGTGGTGGCGCATGCTATTAATCCCAGCACTTAGGAGGCAGAAGCAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTGGCGCATGCTATTAATCCCAGCACTTAGGAGGCAGAAGCAGG  1037

seq1  TGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAATTC  1081