BAC Information

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BAC

Clone NameB6Ng01-150K14
Chromosome2 (Build37)
Map Location 101,832,644 - 101,980,239
singlet/doubletdoublet
Overlap geneLdlrad3
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9
Downstream geneLOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150K14.bB6Ng01-150K14.g
ACCDH946685DH946686
length3761,184
definitionDH946685|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K14, 5' end.DH946686|Mus musculus domesticus DNA, BAC clone: B6Ng01-150K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,979,864 - 101,980,239)(101,832,644 - 101,833,845)
sequence
caagtgtaactaatccatcaaattatgattacagagaggaaataccctat
caatatccgatgtgctgagagggtcacctgctggtgaccaatcattctga
atagccatgccccgtctgagtggactgggctggtgtgtgtgtggtgtctc
ctaggtgtgagtcccattctggaactggtcagcttcctttctgatatcct
gtttctgttgaaatgtgaagcacttgcaggctgctgtggcaaaaggggtt
ggcttttgctccttccatgtcacctgtgcttcctcctgaagtccaaactc
cttcatccatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatcttccaa
aaggggggtaggatggagagagagag
gaattccatcccaacctgatcaagtctgttttctatccttccaaatttct
ggtgcttcttcaaaaatggcagcctcctgacaattgtcttagcttggctc
tttgcttaatgtttaacaatgccagtttttcttaatttcgaaaaaaaaaa
cctagaagcagtcatgactaactgatggcctagaagcagtcatgactaac
tgatggtcactgcaggaatgtctttccaagaatgcaggactcggcagatg
aaggggaaggtacactgggctgtttaggcttgcttacagaatggtgtcat
gttacacaaggtctgcaggtgcttcagccaggaactgaaggcagaagtcc
atgggcaagggaactgaagcttttgtaagggaactcaacctttgaggttg
agtggagccagtctctcaggagcataaccattccagtaagcaggcagcaa
tgcccaccggggagcttgctccctgtcttcctgaaggcgagcagattgag
gtgaacatgagcagggaagaaaatcttgatgctaaagcctttttctgagc
ccataggatcaaattagaggactctaagctactgtctgactaccaacact
ggtctacttcctctcaccggaagttacacgcaggtgtatgtgagcgtggg
tgtaaccatgagtctgagtacgtgaatcttcaaagggccacctcactctt
gactccccaacaaggttccttcagagcagaagggacaagggaccactttc
catatagagctgactgatttctcttgccccgttctcacaggtaacagctt
gtgcccagctgttttctactgtgttccctgtgtagacaggctcctttttt
cctgctacatgcagtctggaacagaggcaaggccagatcaggaagagagg
aatttgtgtttcctagaagggaaaggtcagtcaggctgacatgccattcc
tgatgcttagggtactctctaactaaggacgtgtgagcatactctacttt
gtgtgttgtgtgtggtgatgcgtagggcacttgtctttactaagactgtg
tgtggtgggtgtatgtgcgtctacattggtaccacccccattgcatctta
tatcaataatgaccttaacattcccggtgtatcaaccagtataaaatgac
acttctaaacaatactcagttcctctcggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_101979864_101980239
seq2: B6Ng01-150K14.b_51_426 (reverse)

seq1  CTCTCTCTCTCCATCCTACCCCCCTTTTGGAAGATACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCCATCCTACCCCCCTTTTGGAAGATACACACACACACACA  50

seq1  CACACACACACACACCATGGATGAAGGAGTTTGGACTTCAGGAGGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCATGGATGAAGGAGTTTGGACTTCAGGAGGAAGCA  100

seq1  CAGGTGACATGGAAGGAGCAAAAGCCAACCCCTTTTGCCACAGCAGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACATGGAAGGAGCAAAAGCCAACCCCTTTTGCCACAGCAGCCTG  150

seq1  CAAGTGCTTCACATTTCAACAGAAACAGGATATCAGAAAGGAAGCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTTCACATTTCAACAGAAACAGGATATCAGAAAGGAAGCTGACC  200

seq1  AGTTCCAGAATGGGACTCACACCTAGGAGACACCACACACACACCAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGAATGGGACTCACACCTAGGAGACACCACACACACACCAGCCC  250

seq1  AGTCCACTCAGACGGGGCATGGCTATTCAGAATGATTGGTCACCAGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTCAGACGGGGCATGGCTATTCAGAATGATTGGTCACCAGCAGG  300

seq1  TGACCCTCTCAGCACATCGGATATTGATAGGGTATTTCCTCTCTGTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTCTCAGCACATCGGATATTGATAGGGTATTTCCTCTCTGTAATC  350

seq1  ATAATTTGATGGATTAGTTACACTTG  376
      ||||||||||||||||||||||||||
seq2  ATAATTTGATGGATTAGTTACACTTG  376

seq1: chr2_101832644_101833845
seq2: B6Ng01-150K14.g_69_1252

seq1  GAATTCCATCCCAACCTGATCAAGTCTGTTTTCTATCCTTCCAAATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCAACCTGATCAAGTCTGTTTTCTATCCTTCCAAATTTCT  50

seq1  GGTGCTTCTTCAAAAATGGCAGCCTCCTGACAATTGTCTTAGCTTGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCTTCAAAAATGGCAGCCTCCTGACAATTGTCTTAGCTTGGCTC  100

seq1  TTTGCTTAATGTTTAACAATGCCAGTTTTTCTTAATTTCGAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTAATGTTTAACAATGCCAGTTTTTCTTAATTTCGAAAAAAAAAA  150

seq1  CCTAGAAGCAGTCATGACTAACTGATGGCCTAGAAGCAGTCATGACTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGCAGTCATGACTAACTGATGGCCTAGAAGCAGTCATGACTAAC  200

seq1  TGATGGTCACTGCAGGAATGTCTTTCCAAGAATGCAGGACTCGGCAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTCACTGCAGGAATGTCTTTCCAAGAATGCAGGACTCGGCAGATG  250

seq1  AAGGGGAAGGTACACTGGGCTGTTTAGGCTTGCTTACAGAATGGTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAGGTACACTGGGCTGTTTAGGCTTGCTTACAGAATGGTGTCAT  300

seq1  GTTACACAAGGTCTGCAGGTGCTTCAGCCAGGAACTGAAGGCAGAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACAAGGTCTGCAGGTGCTTCAGCCAGGAACTGAAGGCAGAAGTCC  350

seq1  ATGGGCAAGGGAACTGAAGCTTTTGTAAGGGAACTCAACCTTTGAGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCAAGGGAACTGAAGCTTTTGTAAGGGAACTCAACCTTTGAGGTTG  400

seq1  AGTGGAGCCAGTCTCTCAGGAGCATAACCATTCCAGTAAGCAGGCAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGCCAGTCTCTCAGGAGCATAACCATTCCAGTAAGCAGGCAGCAA  450

seq1  TGCCCACCGGGGAGCTTGCTCCCTGTCTTCCTGAAGGCGAGCAGATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCGGGGAGCTTGCTCCCTGTCTTCCTGAAGGCGAGCAGATTGAG  500

seq1  GTGAACATGAGCAGGGAAGAAAATCTTGATGCTAAAGCCTTTTTCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATGAGCAGGGAAGAAAATCTTGATGCTAAAGCCTTTTTCTGAGC  550

seq1  CCATAGGATCAAATTAGAGGACTCTAAGCTACTGTCTGACTACCAACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGATCAAATTAGAGGACTCTAAGCTACTGTCTGACTACCAACACT  600

seq1  GGTCTACTTCCTCTCACCGGAAGTTACACGCAGGTGTATGTGAGCGTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTTCCTCTCACCGGAAGTTACACGCAGGTGTATGTGAGCGTGGG  650

seq1  TGTAACCATGAGTCTGAGTACGTGAATCTTCAAAGGGCCACCTCACTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATGAGTCTGAGTACGTGAATCTTCAAAGGGCCACCTCACTCTT  700

seq1  GACTCCCCAACAAGGTTCCTTCAGAGCAGAAGGGACAAGGGACCACTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCAACAAGGTTCCTTCAGAGCAGAAGGGACAAGGGACCACTTTC  750

seq1  CATATAGAGCTGACTGATTTCTCTTGCCCCGTTCTCACAGGTAACAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGAGCTGACTGATTTCTCTTGCCCCGTTCTCACAGGTAACAGCTT  800

seq1  GTGCCCAGCTG-TTTCTACTGTGTTTCCCTGTGTAGACAGGCTCC-TCTT  848
      ||||||||||| ||||||||||| ||||||||||||||||||||| | ||
seq2  GTGCCCAGCTGTTTTCTACTGTG-TTCCCTGTGTAGACAGGCTCCTTTTT  849

seq1  TCCTGCTACATGCAGTCTGGAACAGAGGCAAGGCCAGATCAGGAAGAGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTACATGCAGTCTGGAACAGAGGCAAGGCCAGATCAGGAAGAGAG  899

seq1  GGAATTGTGTTTCCTAGAAGGG-AAGGTCAGTCAGGCTGACATGCCATTC  947
      | | |||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAATTTGTGTTTCCTAGAAGGGAAAGGTCAGTCAGGCTGACATGCCATTC  949

seq1  CTGATGCTTAGGGTACTCTCTTAACTAAGGACGTGTGAGCATACTCTACT  997
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGATGCTTAGGGTACTCTC-TAACTAAGGACGTGTGAGCATACTCTACT  998

seq1  CTGTGTG-TGTGTGT-GTGATGCGTAGGGCAC-TGTCTTAACTAAGGACT  1044
       |||||| ||||||| |||||||||||||||| |||||| ||||| ||||
seq2  TTGTGTGTTGTGTGTGGTGATGCGTAGGGCACTTGTCTTTACTAA-GACT  1047

seq1  GTGTGTGTGTGGTGTATGTGCGTCTTACAATTGGTACCCACCCCCATAAG  1094
      |||||||   |||||||||||||| ||| ||||||| ||||||||||   
seq2  GTGTGTGGTGGGTGTATGTGCGTC-TAC-ATTGGTA-CCACCCCCAT--T  1092

seq1  GCATTCTTATTATCAATTTAATGACACTTTACATTTTCCGGGTGTTATCC  1144
      ||| ||||| ||||||  ||||||| ||| |||  |||| |||| ||| |
seq2  GCA-TCTTA-TATCAA--TAATGAC-CTTAACA--TTCCCGGTG-TAT-C  1133

seq1  AACCATTAATAATTGAGCAACTTTCCAAAACAATACTCAGCTACCTTCTC  1194
      ||||| ||  || |||   ||||  | ||||||||||||| |  | ||| 
seq2  AACCAGTATAAAATGA--CACTT--CTAAACAATACTCAGTT--CCTCT-  1176

seq1  CGGAGAGA  1202
      ||||||||
seq2  CGGAGAGA  1184