BAC Information

Click to search

BAC

Clone NameB6Ng01-151H07
Chromosome2 (Build37)
Map Location 49,849,875 - 50,040,374
singlet/doubletdoublet
Overlap geneLypd6
Upstream geneLOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c, 2310010M24Rik
Downstream gene2010311D03Rik, LOC666781, LOC227885, Rnd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151H07.bB6Ng01-151H07.g
ACCDH947269DH947270
length1,0881,099
definitionDH947269|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H07, 5' end.DH947270|Mus musculus domesticus DNA, BAC clone: B6Ng01-151H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,849,875 - 49,850,971)(50,039,277 - 50,040,374)
sequence
gaattctctgaagagacctcagtgttccctggtattggtgacatggatta
atttgcatggcatagattctctcgtctttcctttagaaggttttaaattt
tacattaagcatattctatctcagattaatgtatatatgcatgagataca
agttgacattgtagctctttttctacacagatatcttcagcagtatttag
ggaaatgactttatttctcccagtgcatttgtacaaaattacttgttaat
gtgaggggctgtttcaggatatttatctgaaattccaagttggtatgtac
aaaagtcctcctaggtactaccagttggtgtctaatgggcatttgggact
caacatggctctgcaccagtctcatgttccaccagaagtcttacacatgg
aatctttgccacattcatctttcgttattctgtatttctgattactccaa
ccaagattcttgtcatcattaatgctctccctggtgcctggcaccaatac
tgccagcaagcctcccttcaaaacatgcctggaccccagcctctcctcct
cagtcctctttatctgcagtgatactgcagctcttagtctcttactctca
gggctatttcaacaactagggtttcaagatgattcataggcttttcctct
atagagaagaaaagtcaaagtcttagaagtgacctgagaagtcagcctgc
aaacactttctgtcttcatctcccacaagtctcctctcttctgactcagc
agaagtgcagcaagtcccaatgctgtccctgtggcaggtaaagacccacc
acacgcccttaatagctgctgtctcttagctgacaagctttccgccataa
ttatgcattcttcccttcctcgtttccttaatgtcattgttgtgactttt
tctaatttgtacttgaggtctctcttgagagaggccattagcagatgctc
tctctttctctaggagatggaagtgggggagagtcacctgacaagcaatg
aggagttaataaagataataaaacatggtaagagatggttcagtgggcag
agtaattcatggaagcttgggggtgtggtggggggggt
gaattcacttttgagtaatgaatatttatgtgcacttaaagagcttgggg
acactggctttattgttgctatgaatgtacagatgaacttccataatcta
cccacatgcctaaataccccagccattactaaaaataatcccactaaaac
ttggcagaaatgttgttcgacaaggcctcccttacacatcgaatgtcagg
caacgtgcaactgtttatattgtcaaaacagtgggaaatgctggatgtgt
ggatgtttctagacaagaaagccaagaacaggagttgaagagagcagaga
agtgacagatggcaaatgtctgggacagtgtctctcaaccttcctaatgc
tgtgaccctcattgcacagttcctcatgctgtgctggcctcataattttg
ctactattatcaatcatatggtaaatatctgtgttttctgatggtcttcg
gcaatacccgtgaaagggtccattgacccgcaaagaggttgcgaccagca
gcttgagaaccgctggtctgggctatccttgctggcacagctgttaagct
ctctggatccctgaggcccagttctctcccttgccctccaatccttttta
tcttcttcagactgagcattttctacggttctgctttcaaatcactgcat
ctttccttggttgcctcaactctgttgggatagctgctgaacattttgta
tttcaagtacagtcatggtttgtttttttttgtttttttcacattcagaa
attttcatttggctcctctcatactttccatttatttcctacttttagtg
taattatgattactgaagcattttttttttattggcactgatttaaactt
ttctctaggcagttctccatctctccctcagtgtggtattcattttctaa
gcattgggatttgtagtgtccctcaaaggcctgtgtgctgcagactgatc
accagcctctggcattactaggaagtagtagaagctttcagagtgatgga
gtttatgagggagttaaggccttcaaggatgtttatcctctccactgtcc
ccaccccacaacaccactgtcaagtggaacagcttgttctattcacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49849875_49850971
seq2: B6Ng01-151H07.b_47_1134

seq1  GAATTCTCTGAAGAGACCTCAGTGTTCCCTGGTATTGGTGACATGGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAGAGACCTCAGTGTTCCCTGGTATTGGTGACATGGATTA  50

seq1  ATTTGCATGGCATAGATTCTCTCGTCTTTCCTTTAGAAGGTTTTAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATGGCATAGATTCTCTCGTCTTTCCTTTAGAAGGTTTTAAATTT  100

seq1  TACATTAAGCATATTCTATCTCAGATTAATGTATATATGCATGAGATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAGCATATTCTATCTCAGATTAATGTATATATGCATGAGATACA  150

seq1  AGTTGACATTGTAGCTCTTTTTCTACACAGATATCTTCAGCAGTATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACATTGTAGCTCTTTTTCTACACAGATATCTTCAGCAGTATTTAG  200

seq1  GGAAATGACTTTATTTCTCCCAGTGCATTTGTACAAAATTACTTGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGACTTTATTTCTCCCAGTGCATTTGTACAAAATTACTTGTTAAT  250

seq1  GTGAGGGGCTGTTTCAGGATATTTATCTGAAATTCCAAGTTGGTATGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGCTGTTTCAGGATATTTATCTGAAATTCCAAGTTGGTATGTAC  300

seq1  AAAAGTCCTCCTAGGTACTACCAGTTGGTGTCTAATGGGCATTTGGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCCTCCTAGGTACTACCAGTTGGTGTCTAATGGGCATTTGGGACT  350

seq1  CAACATGGCTCTGCACCAGTCTCATGTTCCACCAGAAGTCTTACACATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGGCTCTGCACCAGTCTCATGTTCCACCAGAAGTCTTACACATGG  400

seq1  AATCTTTGCCACATTCATCTTTCGTTATTCTGTATTTCTGATTACTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGCCACATTCATCTTTCGTTATTCTGTATTTCTGATTACTCCAA  450

seq1  CCAAGATTCTTGTCATCATTAATGCTCTCCCTGGTGCCTGGCACCAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTCTTGTCATCATTAATGCTCTCCCTGGTGCCTGGCACCAATAC  500

seq1  TGCCAGCAAGCCTCCCTTCAAAACATGCCTGGACCCCAGCCTCTCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAAGCCTCCCTTCAAAACATGCCTGGACCCCAGCCTCTCCTCCT  550

seq1  CAGTCCTCTTTATCTGCAGTGATACTGCAGCTCTTAGTCTCTTACTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTCTTTATCTGCAGTGATACTGCAGCTCTTAGTCTCTTACTCTCA  600

seq1  GGGCTATTTCAACAACTAGGGTTTCAAGATGATTCATAGGCTTTTCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATTTCAACAACTAGGGTTTCAAGATGATTCATAGGCTTTTCCTCT  650

seq1  ATAGAGAAGAAAAGTCAAAGTCTTAGAAGTGACCTGAGAAGTCAGCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAGAAAAGTCAAAGTCTTAGAAGTGACCTGAGAAGTCAGCCTGC  700

seq1  AAACACTTTCTGTCTTCATCTCCCACAAGTCTCCTCTCTTCTGACTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTTCTGTCTTCATCTCCCACAAGTCTCCTCTCTTCTGACTCAGC  750

seq1  AGAAGTGCAGCAAGTCCCAATGCTGTCCCTGTGGCAGGTAAAGACCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCAGCAAGTCCCAATGCTGTCCCTGTGGCAGGTAAAGACCCACC  800

seq1  ACACGCCCTTAATAGCTGCTGTCTCTTAGCTGACAAGCTTTCCGCCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCCCTTAATAGCTGCTGTCTCTTAGCTGACAAGCTTTCCGCCATAA  850

seq1  TTATGCATTCTTCCCTTCCTCGTTTCCTTAATGTCATTGTTGTGACTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATTCTTCCCTTCCTCGTTTCCTTAATGTCATTGTTGTGACTTTT  900

seq1  TCTAATTTGTACTTGAGGTCTCTCTTGAGAGAGGCCATTAGCAAGATGCT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTAATTTGTACTTGAGGTCTCTCTTGAGAGAGGCCATTAGC-AGATGCT  949

seq1  CTCTCTTTCTCTAGGAGATGGAAGTGGGGGAGAGTCACCTGACAAGCAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTCTAGGAGATGGAAGTGGGGGAGAGTCACCTGACAAGCAAT  999

seq1  GAGGAAGTTTAAATAAAGATACATAAAACATGGGTTAAGGAGATGGTTCA  1050
      |||| ||||  |||||||||| |||||||||||  ||| |||||||||||
seq2  GAGG-AGTT--AATAAAGATA-ATAAAACATGG--TAA-GAGATGGTTCA  1042

seq1  GTGGGCAAGAGTAATTCCATGAAAGCCTGGGGG-GTGGTGGGGGGGCT  1097
      |||||| ||||||||| |||| |||| |||||| |||||||||||| |
seq2  GTGGGC-AGAGTAATT-CATGGAAGCTTGGGGGTGTGGTGGGGGGGGT  1088

seq1: chr2_50039277_50040374
seq2: B6Ng01-151H07.g_69_1167 (reverse)

seq1  AATGTG-ATAGAGCAAGCTGTT-CACCTGACAGTGGTGGTTGT-GGGTGG  47
      |||||| ||||| ||||||||| ||| |||||||||| ||||| ||||||
seq2  AATGTGAATAGAACAAGCTGTTCCACTTGACAGTGGT-GTTGTGGGGTGG  49

seq1  GGACAGTTGGAGA-GATAGACATCCTTGAAGGCC-TAACTCCCTCATAAG  95
      |||||| |||||| |||| ||||||||||||||| |||||||||||||  
seq2  GGACAG-TGGAGAGGATAAACATCCTTGAAGGCCTTAACTCCCTCATA--  96

seq1  ACCTCATTCACTTCTGAAAGCCTCTACTACTTCCTAGTAATGCCAGAGGC  145
      | |||  |||| ||||||||| ||||||||||||||||||||||||||||
seq2  AACTCCATCAC-TCTGAAAGCTTCTACTACTTCCTAGTAATGCCAGAGGC  145

seq1  TGGTGATCAAGTCTGCAGCACACAGGCCTTTGAGGGACACTACAAATCCC  195
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATC-AGTCTGCAGCACACAGGCCTTTGAGGGACACTACAAATCCC  194

seq1  AATGCTTAGAAAATGAATACCACACTGAGGGAGAGATGGAGAACTGCCTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTAGAAAATGAATACCACACTGAGGGAGAGATGGAGAACTGCCTA  244

seq1  GAGAAAAGTTTAAATCAGTGCCAAT-AAAAAAAAATGCTTCAGTAATCAT  294
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGAAAAGTTTAAATCAGTGCCAATAAAAAAAAAATGCTTCAGTAATCAT  294

seq1  AATTACACTAAAAGTAGGAAATAAATGGAAAGTATGAGAGGAGCCAAATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACACTAAAAGTAGGAAATAAATGGAAAGTATGAGAGGAGCCAAATG  344

seq1  AAAATTTCTGAATGTGAAAAAAACAAAAAAAAACAAACCATGACTGTACT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCTGAATGTGAAAAAAACAAAAAAAAACAAACCATGACTGTACT  394

seq1  TGAAATAC-AAATGTTCAGCAGCTATCCCAACAGAGTTGAGGCAACCAAG  443
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATACAAAATGTTCAGCAGCTATCCCAACAGAGTTGAGGCAACCAAG  444

seq1  GAAAGATGCAGTGATTTGAAAGCAGAACCGTAGAAAATGCTCAGTCTGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGCAGTGATTTGAAAGCAGAACCGTAGAAAATGCTCAGTCTGAA  494

seq1  GAAGATAAAAAGGATTGGAGGGCAAGGGAGAGAACTGGGCCTCAGGGATC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAAAAGGATTGGAGGGCAAGGGAGAGAACTGGGCCTCAGGGATC  544

seq1  CAGAGAGCTTAACAGCTGTGCCAGCAAGGATAGCCCAGACCAGCGGTTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTTAACAGCTGTGCCAGCAAGGATAGCCCAGACCAGCGGTTCT  594

seq1  CAAGCTGCTGGTCGCAACCTCTTTGCGGGTCAATGGACCCTTTCACGGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCTGGTCGCAACCTCTTTGCGGGTCAATGGACCCTTTCACGGGT  644

seq1  ATTGCCGAAGACCATCAGAAAACACAGATATTTACCATATGATTGATAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCGAAGACCATCAGAAAACACAGATATTTACCATATGATTGATAAT  694

seq1  AGTAGCAAAATTATGAGGCCAGCACAGCATGAGGAACTGTGCAATGAGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAAAATTATGAGGCCAGCACAGCATGAGGAACTGTGCAATGAGGG  744

seq1  TCACAGCATTAGGAAGGTTGAGAGACACTGTCCCAGACATTTGCCATCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCATTAGGAAGGTTGAGAGACACTGTCCCAGACATTTGCCATCTG  794

seq1  TCACTTCTCTGCTCTCTTCAACTCCTGTTCTTGGCTTTCTTGTCTAGAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCTGCTCTCTTCAACTCCTGTTCTTGGCTTTCTTGTCTAGAAA  844

seq1  CATCCACACATCCAGCATTTCCCACTGTTTTGACAATATAAACAGTTGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACACATCCAGCATTTCCCACTGTTTTGACAATATAAACAGTTGCA  894

seq1  CGTTGCCTGACATTCGATGTGTAAGGGAGGCCTTGTCGAACAACATTTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCCTGACATTCGATGTGTAAGGGAGGCCTTGTCGAACAACATTTCT  944

seq1  GCCAAGTTTTAGTGGGATTATTTTTAGTAATGGCTGGGGTATTTAGGCAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTTTTAGTGGGATTATTTTTAGTAATGGCTGGGGTATTTAGGCAT  994

seq1  GTGGGTAGATTATGGAAGTTCATCTGTACATTCATAGCAACAATAAAGCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGATTATGGAAGTTCATCTGTACATTCATAGCAACAATAAAGCC  1044

seq1  AGTGTCCCCAAGCTCTTTAAGTGCACATAAATATTCATTACTCAAAAGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCCCAAGCTCTTTAAGTGCACATAAATATTCATTACTCAAAAGTG  1094

seq1  AATTC  1098
      |||||
seq2  AATTC  1099