BAC Information

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BAC

Clone NameB6Ng01-151M10
Chromosome2 (Build37)
Map Location 30,546,704 - 30,689,426
singlet/doubletdoublet
Overlap geneEG665645, 1700001O22Rik, 2610205E22Rik, Asb6
Upstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad
Downstream genePrrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151M10.bB6Ng01-151M10.g
ACCDH947511DH947512
length1,0761,130
definitionDH947511|Mus musculus domesticus DNA, BAC clone: B6Ng01-151M10, 5' end.DH947512|Mus musculus domesticus DNA, BAC clone: B6Ng01-151M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,546,704 - 30,547,780)(30,688,275 - 30,689,426)
sequence
gaattcactctatagaccaggctggcctcgaaatcagaaatccgcctgcc
tctgcctcctgagtactgggattaaaggcgtgtgccaccacagccctggc
tagttttatgtcaacttgacactctggcagcaagccagaagagaatttcc
ttatttggtgattgatgtgggcgggctgggcacatgtgtgggtggagcca
accctgggctggtggtcctgggtttcctaagagagcaagccacgcccagc
aagccagtaagcagcactccttcaaggcttctgcttcagctcctgccctg
ggtgcctgccctgtttgagtttctgtcctgacttccttccaggacaaact
aaggacgtggaagcagaagtcacggacgtggaaccctttccccctcaact
tggttttcatccgtagtgtttcatcagtcccagccggaaggcaaggacca
acccctgaggttgttctgactgctgcacacatacaaggggagtacacaag
accatgagcactggacccccaagaaaaccaaagtgggttccaggcccatc
ctggccttctggggactgcagtgcagaccctggtgccatccggttagacc
tcagaagttgaggccagaactttggaagatgttgcagttgcttgaaggca
ggagagggactggaggcccttatgaggcagagcaagaggtgaaacacagt
tgtctggtggtgctgtagctcagggtgcaaggccctgggtctacccctag
acataaaggaaacaatcaagaaaaactccaccccatcaggcaggctctgg
gggtgcctgccttctcctagtctttgatcctgacctattttgagcacccc
agaagttttactcagatggtgggttcttctgctgctttgctggagacctc
ttctctcagaagctgccacaagggtgattgagctgtcagtacaaatgaca
ggctattaggtcttggagccattttgatctgaggttggccagggtgttcc
tgtgttctgtacatagtggggactgggggattctggggtgaggctttcct
cttgttctcactgtctccgatctctg
gaattctctgttccagcagagacatggactgggggaaagaaggaaacagc
aggccacatattgattccagatgtggccctctccagcaatttaattaagt
tccccagacagccaggagaggttcttagtgatcagatttcctggctccct
cctccagcagccatgggcccactgtctccctgacggatggcgacgggtcc
ttcctgccctgagtcagcttcgccaacagggtagggcacagataactggt
cttcccaggagcaagtgcccctggccccaatttctgtccatccctccttc
ccctacctccaggggtccaagccctcttgctggctcttggcaggcttggt
caggctctgctgagcaggcagagggtgccagcagggctctctcctaagag
aggccccccacccacccataccctgtgcttgccagagcttcaggccaagt
aggcaccagtgagcctctgtgatgggggaacctctggggccaggactctg
agccactcatctgccaccaacggagtaagcctcaagtcctctgtgcagtc
tgaccacagcgcagatggcacagaggtcgcggtgacttggtatttaggca
gatcttttggggacaggtctgggccatgtttgccagttgattacccacac
agggacctggaagtcacagtctgcaaatctggcagaccctgaaggaccct
gagaggaaactaacaaatctcctgctgcatccattgcttgggcggatagg
ctttcaagctgagcaaaggccagccagagcccaggcccacagtccgtgct
gtcccctggccagggtccctgggactctatgtacttcatccctgttctcc
tgggcttctgggtccctggggatacagcagctgggggaatttaaagggct
gtgctttgtttggagatgcgagatgccatggggcaacctctcatatacac
atcatggtcacagactgccacagggaactagcctggcccagctcagctat
agtgaccacctcagagctctcactgtgacctctacaagacatctgcaggc
taagaagtaagcaatgaagctaggactggtgtcctcacttaagaagggct
tgcaatgtcccaggagatgttagaagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_30546704_30547780
seq2: B6Ng01-151M10.b_44_1119

seq1  GAATTCACTCTATAGACCAGGCTGGCCTCGAAATCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGACCAGGCTGGCCTCGAAATCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCTGAGTACTGGGATTAAAGGCGTGTGCCACCACAGCCCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGAGTACTGGGATTAAAGGCGTGTGCCACCACAGCCCTGGC  100

seq1  TAGTTTTATGTCAACTTGACACTCTGGCAGCAAGCCAGAAGAGAATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTATGTCAACTTGACACTCTGGCAGCAAGCCAGAAGAGAATTTCC  150

seq1  TTATTTGGTGATTGATGTGGGCGGGCTGGGCACATGTGTGGGTGGAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGGTGATTGATGTGGGCGGGCTGGGCACATGTGTGGGTGGAGCCA  200

seq1  ACCCTGGGCTGGTGGTCCTGGGTTTCCTAAGAGAGCAAGCCACGCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGCTGGTGGTCCTGGGTTTCCTAAGAGAGCAAGCCACGCCCAGC  250

seq1  AAGCCAGTAAGCAGCACTCCTTCAAGGCTTCTGCTTCAGCTCCTGCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTAAGCAGCACTCCTTCAAGGCTTCTGCTTCAGCTCCTGCCCTG  300

seq1  GGTGCCTGCCCTGTTTGAGTTTCTGTCCTGACTTCCTTCCAGGACAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTGCCCTGTTTGAGTTTCTGTCCTGACTTCCTTCCAGGACAAACT  350

seq1  AAGGACGTGGAAGCAGAAGTCACGGACGTGGAACCCTTTCCCCCTCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGTGGAAGCAGAAGTCACGGACGTGGAACCCTTTCCCCCTCAACT  400

seq1  TGGTTTTCATCCGTAGTGTTTCATCAGTCCCAGCCGGAAGGCAAGGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTCATCCGTAGTGTTTCATCAGTCCCAGCCGGAAGGCAAGGACCA  450

seq1  ACCCCTGAGGTTGTTCTGACTGCTGCACACATACAAGGGGAGTACACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAGGTTGTTCTGACTGCTGCACACATACAAGGGGAGTACACAAG  500

seq1  ACCATGAGCACTGGACCCCCAAGAAAACCAAAGTGGGTTCCAGGCCCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGCACTGGACCCCCAAGAAAACCAAAGTGGGTTCCAGGCCCATC  550

seq1  CTGGCCTTCTGGGGACTGCAGTGCAGACCCTGGTGCCATCCGGTTAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTCTGGGGACTGCAGTGCAGACCCTGGTGCCATCCGGTTAGACC  600

seq1  TCAGAAGTTGAGGCCAGAACTTTGGAAGATGTTGCAGTTGCTTGAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTGAGGCCAGAACTTTGGAAGATGTTGCAGTTGCTTGAAGGCA  650

seq1  GGAGAGGGACTGGAGGCCCTTATGAGGCAGAGCAAGAGGTGAAACACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGACTGGAGGCCCTTATGAGGCAGAGCAAGAGGTGAAACACAGT  700

seq1  TGTCTGGTGGTGCTGTAGCTCAGGGTGCAAGGCCCTGGGTCTACCCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTGGTGCTGTAGCTCAGGGTGCAAGGCCCTGGGTCTACCCCTAG  750

seq1  ACATAAAGGAAACAATCAAGAAAAACTCCACCCCATCAGGCAGGCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAGGAAACAATCAAGAAAAACTCCACCCCATCAGGCAGGCTCTGG  800

seq1  GGGTGCCTGCCTTCTCCTAGTCTTTGATCCTGACCTATTTTGAGCACCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCTGCCTTCTCCTAGTCTTTGATCCTGACCTATTTTGAGCACCCC  850

seq1  AGAAGTTCTACTCAGATGGTGGG-TCTCCTGCTGC-TTGCTGGAGACCTC  898
      ||||||| ||||||||||||||| ||| ||||||| ||||||||||||||
seq2  AGAAGTTTTACTCAGATGGTGGGTTCTTCTGCTGCTTTGCTGGAGACCTC  900

seq1  TTCCCTCAGGAAGCTGCCACAAGGGTGATTGAGCTGTCAGTACAAATGAC  948
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCA-GAAGCTGCCACAAGGGTGATTGAGCTGTCAGTACAAATGAC  949

seq1  AGGCTATTAGGTC-TGGAGCCATTTTGATCTGAGGTTGGCCAGGGTGTTC  997
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTAGGTCTTGGAGCCATTTTGATCTGAGGTTGGCCAGGGTGTTC  999

seq1  CTGTGTTCCTGTACATAGTGGGGACTGGGGGATTCTGGGGTTGAGGGCTT  1047
      ||||||| |||||||||||||||||||||||||||||||| |||||  ||
seq2  CTGTGTT-CTGTACATAGTGGGGACTGGGGGATTCTGGGG-TGAGGCTTT  1047

seq1  TCTCTTGTTCCTCAACTGTCTCCGA-CTCTG  1077
       |||||||| ||| ||||||||||| |||||
seq2  CCTCTTGTT-CTC-ACTGTCTCCGATCTCTG  1076

seq1: chr2_30688275_30689426
seq2: B6Ng01-151M10.g_67_1196 (reverse)

seq1  TGAGCTTTCCTACCCATCTCCTGGGACATCTGCCCAGAGCCCCTCTCTAA  50
      |||||||  |||  ||||||||||||||| |||    ||||| ||| |||
seq2  TGAGCTT--CTA-ACATCTCCTGGGACAT-TGC---AAGCCCTTCT-TAA  42

seq1  GGTGA-GACACCAGT-CTAGCTTCAATTGCTCTACCTTCTAGCCCCTGCA  98
       |||| ||||||||| |||||||| |||||| ||| |  |||  ||||||
seq2  -GTGAGGACACCAGTCCTAGCTTC-ATTGCT-TACTTCTTAG--CCTGCA  87

seq1  GATGGTCTGTGGTTTGGGGTCACAGTGTGGAGCTCTGGGGTGGTCACTTA  148
      ||| |||| ||  | | ||||||||||  |||||||| ||||||||| ||
seq2  GAT-GTCT-TG--TAGAGGTCACAGTG-AGAGCTCTGAGGTGGTCAC-TA  131

seq1  TAGCTGAGCTGGGCCCAGGCTAGTTCCCTGGTGGGCAGTCTGTGACCATG  198
      ||||||||||||| ||||||||||||||||   |||||||||||||||||
seq2  TAGCTGAGCTGGG-CCAGGCTAGTTCCCTG--TGGCAGTCTGTGACCATG  178

seq1  ATGTGTATATTGAGAGGTTGCCCCATGGCATCTTCCGCATCTCCAAACAA  248
      ||||||||| |||||||||||||||||||||||  |||||||||||||||
seq2  ATGTGTATA-TGAGAGGTTGCCCCATGGCATCT--CGCATCTCCAAACAA  225

seq1  AGCACAGGCCTTT-AATTCCCCCAGCTGCTGTATCCCCAGGGACCCAGAA  297
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCCCTTTAAATTCCCCCAGCTGCTGTATCCCCAGGGACCCAGAA  275

seq1  GCCCAGGAGAACAGGGATGAAGTACATAGAGTCCCAGGGACCCTGGCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGAGAACAGGGATGAAGTACATAGAGTCCCAGGGACCCTGGCCAG  325

seq1  GGGACAGCACGGACTGTGGGCCTGGGCTCTGGCTGGCCTTTGCTCAGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGCACGGACTGTGGGCCTGGGCTCTGGCTGGCCTTTGCTCAGCTT  375

seq1  GAAAGCCTATCCGCCCAAGCAATGGATGCAGCAGGAGATTTGTTAGTTTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTATCCGCCCAAGCAATGGATGCAGCAGGAGATTTGTTAGTTTC  425

seq1  CTCTCAGGGTCCTTCAGGGTCTGCCAGATTTGCAGACTGTGACTTCCAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGGTCCTTCAGGGTCTGCCAGATTTGCAGACTGTGACTTCCAGG  475

seq1  TCCCTGTGTGGGTAATCAACTGGCAAACATGGCCCAGACCTGTCCCCAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTGTGGGTAATCAACTGGCAAACATGGCCCAGACCTGTCCCCAAA  525

seq1  AGATCTGCCTAAATACCAAGTCACCGCGACCTCTGTGCCATCTGCGCTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCCTAAATACCAAGTCACCGCGACCTCTGTGCCATCTGCGCTGT  575

seq1  GGTCAGACTGCACAGAGGACTTGAGGCTTACTCCGTTGGTGGCAGATGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGACTGCACAGAGGACTTGAGGCTTACTCCGTTGGTGGCAGATGAG  625

seq1  TGGCTCAGAGTCCTGGCCCCAGAGGTTCCCCCATCACAGAGGCTCACTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGAGTCCTGGCCCCAGAGGTTCCCCCATCACAGAGGCTCACTGG  675

seq1  TGCCTACTTGGCCTGAAGCTCTGGCAAGCACAGGGTATGGGTGGGTGGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTTGGCCTGAAGCTCTGGCAAGCACAGGGTATGGGTGGGTGGGG  725

seq1  GGCCTCTCTTAGGAGAGAGCCCTGCTGGCACCCTCTGCCTGCTCAGCAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTTAGGAGAGAGCCCTGCTGGCACCCTCTGCCTGCTCAGCAGA  775

seq1  GCCTGACCAAGCCTGCCAAGAGCCAGCAAGAGGGCTTGGACCCCTGGAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCAAGCCTGCCAAGAGCCAGCAAGAGGGCTTGGACCCCTGGAGG  825

seq1  TAGGGGAAGGAGGGATGGACAGAAATTGGGGCCAGGGGCACTTGCTCCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAAGGAGGGATGGACAGAAATTGGGGCCAGGGGCACTTGCTCCTG  875

seq1  GGAAGACCAGTTATCTGTGCCCTACCCTGTTGGCGAAGCTGACTCAGGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCAGTTATCTGTGCCCTACCCTGTTGGCGAAGCTGACTCAGGGC  925

seq1  AGGAAGGACCCGTCGCCATCCGTCAGGGAGACAGTGGGCCCATGGCTGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGACCCGTCGCCATCCGTCAGGGAGACAGTGGGCCCATGGCTGCT  975

seq1  GGAGGAGGGAGCCAGGAAATCTGATCACTAAGAACCTCTCCTGGCTGTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGAGCCAGGAAATCTGATCACTAAGAACCTCTCCTGGCTGTCT  1025

seq1  GGGGAACTTAATTAAATTGCTGGAGAGGGCCACATCTGGAATCAATATGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACTTAATTAAATTGCTGGAGAGGGCCACATCTGGAATCAATATGT  1075

seq1  GGCCTGCTGTTTCCTTCTTTCCCCCAGTCCATGTCTCTGCTGGAACAGAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTGTTTCCTTCTTTCCCCCAGTCCATGTCTCTGCTGGAACAGAG  1125

seq1  AATTC  1152
      |||||
seq2  AATTC  1130