BAC Information

Click to search

BAC

Clone NameB6Ng01-152C04
Chromosome2 (Build37)
Map Location 15,977,327 - 16,121,766
singlet/doubletdoublet
Overlap genenone
Upstream geneArl5b, LOC633061, LOC667329, LOC227588, LOC625457
Downstream genePlxdc2, 4930515L03Rik, LOC383665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152C04.bB6Ng01-152C04.g
ACCDH947785DH947786
length1,1481,197
definitionDH947785|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C04, 5' end.DH947786|Mus musculus domesticus DNA, BAC clone: B6Ng01-152C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,120,622 - 16,121,766)(15,977,327 - 15,978,549)
sequence
gaattctctgtcctaaagtaaccttgatggctgaatagcaaaaggctgaa
aaaacagattgatgacttggttgtccctggttagcagacaagttgcttaa
caccttgccaatcaaaatatccacaagataacaaaccatttgccttccaa
agtaaattacggaccccattgattcttcatttctttctttaaaaaaatac
cctgattgttttcaatggcttcattctggagaatctcatgcagtaatcag
aaggttgttaggggcagaccaccaagaatgtcaagagtgattttttcact
gtgccaacattatagtgaaaaataaattatgggaaatcagagtgggtgcc
aagaatcacgttgataaacagaagtgtgatgaaaatgctgaatatgtcct
catctgaacatctggtcccattccctggtcccatttccccacatgtgtac
aaaatcaggatcacaggggacaaggaaccaaggagaaatgactcaggtac
aatagtcactgcccttaactgttaccatccagcacattaccaattgttgt
tcatcttagatgttgttcatgcttagaaaatggaatacaaatggagaacc
atctcagtggcccttctgcctgttcctgtgtctccttgtatcccctctcc
ttccaggtattgaagacagctatatatgctctatcaggttctgctgggag
ctcataagactatcaacaatacattcaaaatagccctgtatttttaattg
gccctgtatatgttaagtagttttattatagttatttgattctcaaaact
gtatgattttttttctctctactcaactttcaaaatataacagccactag
tagtgtgagttcagtaaacatatattgccagagtacttgagaagggtggg
gtagctttctctatatcaactgagcaaagctcatatgaacttacacagac
caaatcagcagcacagaggctgcatggatctgcacaagatacccctcata
ttattggtgcttttcagtttagtgttcatggggattcctggagtgttgtg
aataagtgagtctttggactgccatggccttttcttggggctcttcttcg
gtggttttccttgtcccaccatggaatggatagcgttttcaccttaca
gaattctctgttttgaaggagaggtatattacatactattttttaaaacc
attagacagctttataagaagaagaaaaagaggagaattttcttcagttt
aaaacagagtgaattcggatcatttaatgtggcaaattgtctcttatgat
ttaaccagagagtaaatgagcatattttttatttggcagaagactcatga
aaatagagattcctttatgagtattaactgttcttctaaaaaagaaatgt
caaattataatttgacacaataattcactgaaatattttaaatataagat
agtactttctcatatctaaaagacaatttaggctttttatcttttgctca
taaagaatggccatgaaatgtgatatatatatatatgttatatgtatata
ttacattatttctaatacatgtatgcatatatatgtgtaatatattgctt
gctttgcagtaggaaattatcattgtcacttgagaaaagcacactgcaat
gttgaatgcatactacttatatgtgacattaagtggtcaccaattttcaa
aactattcaattgcttaattagttgttaaaatagcagtttaatattacta
agaaatctgtccctattctttatggtaaccaattagttgtcaaacataag
aatatttgcacgtataatctcagaagcttgcaattataaaacattaagtg
aagtcctgaactgcaagtgtgcagaaaatatttaggaagaatgaggagta
aaatttagaaatacttactgaaaacatctttcagaattttgcatcctggt
aaacttaattgagctatgacaggttgtataagatcaggtgagaatttgaa
atagaagctcctggacagctccaaagcaaataatcaaagaattttgcctt
tgaaactatgtctccctgaatgctattgatcattccacacagcttcatgt
aagtaatggaaatgaactggtttaacgatttctaatgaattcccaatatg
tcctgcagtgagacataacactcttttttcctgtaacattttaactgtta
gtgtgtctgccatgaatcatcataagaatggtgcagtttggttgtgagcc
acaaaacggggttgattggtgtaaacccctcccttatctctggtctctcc
atcccacaagtctcacctaaaactaactggatgatccacctctccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_16120622_16121766
seq2: B6Ng01-152C04.b_44_1191 (reverse)

seq1  TGTAAGATGAAAAACGCTATCACATCCAT-GTTGGACAAGGAAAACCAAC  49
      |||||| || |||||||||||   ||||| || |||||||||||||| ||
seq2  TGTAAGGTG-AAAACGCTATCCATTCCATGGTGGGACAAGGAAAACC-AC  48

seq1  AGAAGGAAGAG-CCCAAGAAAA-GCCATGGCAGT-CAGAGACTCACTTAT  96
       ||| |||||| |||||||||| ||||||||||| || ||||||||||||
seq2  CGAA-GAAGAGCCCCAAGAAAAGGCCATGGCAGTCCAAAGACTCACTTAT  97

seq1  TCAC-ACACT-CAGGAAT-CCCATGAAAACACTAAACTGAAAAGCA-CAA  142
      |||| ||||| ||||||| ||||||  ||||||||||||||||||| |||
seq2  TCACAACACTCCAGGAATCCCCATG--AACACTAAACTGAAAAGCACCAA  145

seq1  T-ATATGAGGGGTATCTTGTGCAGATCCATGCAGGCTCTGTGCTGCTGAT  191
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAATATGAGGGGTATCTTGTGCAGATCCATGCAGCCTCTGTGCTGCTGAT  195

seq1  TTGGTCTGTGTAAGTTCATATGAGCTTTGCTCAGTTGATATAGAGAAAGC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGTGTAAGTTCATATGAGCTTTGCTCAGTTGATATAGAGAAAGC  245

seq1  TACCCCACCCTTCTCAAGTACTCTGGCAATATATGTTTACTGAACTCACA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCACCCTTCTCAAGTACTCTGGCAATATATGTTTACTGAACTCACA  295

seq1  CTACTAGTGGCTGTTATATTTTGAAAGTTGAGTAGAGAGAAAAAAAATCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGTGGCTGTTATATTTTGAAAGTTGAGTAGAGAGAAAAAAAATCA  345

seq1  TAACAGTTTTGAGAATCAAATAACTATAATAAAACTACTTAACATATACA  391
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACAGTTTTGAGAATCAAATAACTATAATAAAACTACTTAACATATACA  394

seq1  GGGCCAATTAAAAATACAGGGCTATTTTGAATGTATTGTTGATAGTCTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAATTAAAAATACAGGGCTATTTTGAATGTATTGTTGATAGTCTTA  444

seq1  TGAGCTCCCAGCAGAACCTGATAGAGCATATATAGCTGTCTTCAATACCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCCAGCAGAACCTGATAGAGCATATATAGCTGTCTTCAATACCT  494

seq1  GGAAGGAGAGGGGATACAAGGAGACACAGGAACAGGCAGAAGGGCCACTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGAGGGGATACAAGGAGACACAGGAACAGGCAGAAGGGCCACTG  544

seq1  AGATGGTTCTCCATTTGTATTCCATTTTCTAAGCATGAACAACATCTAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTCTCCATTTGTATTCCATTTTCTAAGCATGAACAACATCTAAG  594

seq1  ATGAACAACAATTGGTAATGTGCTGGATGGTAACAGTTAAGGGCAGTGAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAACAATTGGTAATGTGCTGGATGGTAACAGTTAAGGGCAGTGAC  644

seq1  TATTGTACCTGAGTCATTTCTCCTTGGTTCCTTGTCCCCTGTGATCCTGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACCTGAGTCATTTCTCCTTGGTTCCTTGTCCCCTGTGATCCTGA  694

seq1  TTTTGTACACATGTGGGGAAATGGGACCAGGGAATGGGACCAGATGTTCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACACATGTGGGGAAATGGGACCAGGGAATGGGACCAGATGTTCA  744

seq1  GATGAGGACATATTCAGCATTTTCATCACACTTCTGTTTATCAACGTGAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGACATATTCAGCATTTTCATCACACTTCTGTTTATCAACGTGAT  794

seq1  TCTTGGCACCCACTCTGATTTCCCATAATTTATTTTTCACTATAATGTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCACCCACTCTGATTTCCCATAATTTATTTTTCACTATAATGTTG  844

seq1  GCACAGTGAAAAAATCACTCTTGACATTCTTGGTGGTCTGCCCCTAACAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGAAAAAATCACTCTTGACATTCTTGGTGGTCTGCCCCTAACAA  894

seq1  CCTTCTGATTACTGCATGAGATTCTCCAGAATGAAGCCATTGAAAACAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGATTACTGCATGAGATTCTCCAGAATGAAGCCATTGAAAACAAT  944

seq1  CAGGGTATTTTTTTAAAGAAAGAAATGAAGAATCAATGGGGTCCGTAATT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTATTTTTTTAAAGAAAGAAATGAAGAATCAATGGGGTCCGTAATT  994

seq1  TACTTTGGAAGGCAAATGGTTTGTTATCTTGTGGATATTTTGATTGGCAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGAAGGCAAATGGTTTGTTATCTTGTGGATATTTTGATTGGCAA  1044

seq1  GGTGTTAAGCAACTTGTCTGCTAACCAGGGACAACCAAGTCATCAATCTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAAGCAACTTGTCTGCTAACCAGGGACAACCAAGTCATCAATCTG  1094

seq1  TTTTTTCAGCCTTTTGCTATTCAGCCATCAAGGTTACTTTAGGACAGAGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAGCCTTTTGCTATTCAGCCATCAAGGTTACTTTAGGACAGAGA  1144

seq1  ATTC  1145
      ||||
seq2  ATTC  1148

seq1: chr2_15977327_15978549
seq2: B6Ng01-152C04.g_70_1266

seq1  GAATTCTCTGTTTTGAAGGAGAGGTATATTACATACTATTTTTTAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTTGAAGGAGAGGTATATTACATACTATTTTTTAAAACC  50

seq1  ATTAGACAGCTTTATAAGAAGAAGAAAAAGAGGAGAATTTTCTTCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACAGCTTTATAAGAAGAAGAAAAAGAGGAGAATTTTCTTCAGTTT  100

seq1  AAAACAGAGTGAATTCGGATCATTTAATGTGGCAAATTGTCTCTTATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGTGAATTCGGATCATTTAATGTGGCAAATTGTCTCTTATGAT  150

seq1  TTAACCAGAGAGTAAATGAGCATATTTTTTATTTGGCAGAAGACTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAGAGAGTAAATGAGCATATTTTTTATTTGGCAGAAGACTCATGA  200

seq1  AAATAGAGATTCCTTTATGAGTATTAACTGTTCTTCTAAAAAAGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGATTCCTTTATGAGTATTAACTGTTCTTCTAAAAAAGAAATGT  250

seq1  CAAATTATAATTTGACACAATAATTCACTGAAATATTTTAAATATAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATAATTTGACACAATAATTCACTGAAATATTTTAAATATAAGAT  300

seq1  AGTACTTTCTCATATCTAAAAGACAATTTAGGCTTTTTATCTTTTGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTCTCATATCTAAAAGACAATTTAGGCTTTTTATCTTTTGCTCA  350

seq1  TAAAGAATGGCCATGAAATGTGATATATATATATATGTTATATGTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATGGCCATGAAATGTGATATATATATATATGTTATATGTATATA  400

seq1  TTACATTATTTCTAATACATGTATGCATATATATGTGTAATATATTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTATTTCTAATACATGTATGCATATATATGTGTAATATATTGCTT  450

seq1  GCTTTGCAGTAGGAAATTATCATTGTCACTTGAGAAAAGCACACTGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCAGTAGGAAATTATCATTGTCACTTGAGAAAAGCACACTGCAAT  500

seq1  GTTGAATGCATACTACTTATATGTGACATTAAGTGGTCACCAATTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGCATACTACTTATATGTGACATTAAGTGGTCACCAATTTTCAA  550

seq1  AACTATTCAATTGCTTAATTAGTTGTTAAAATAGCAGTTTAATATTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCAATTGCTTAATTAGTTGTTAAAATAGCAGTTTAATATTACTA  600

seq1  AGAAATCTGTCCCTATTCTTTATGGTAACCAATTAGTTGTCAAACATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGTCCCTATTCTTTATGGTAACCAATTAGTTGTCAAACATAAG  650

seq1  AATATTTGCACGTATAATCTCAGAAGCTTGCAATTATAAAACATTAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGCACGTATAATCTCAGAAGCTTGCAATTATAAAACATTAAGTG  700

seq1  AAGTCCTGAACTGCAAGTGTGCAGAAAATATTTAGGAAGAATGAGGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGAACTGCAAGTGTGCAGAAAATATTTAGGAAGAATGAGGAGTA  750

seq1  AAATTTAGAAATACTTACTGAAAACATCTTTCAGAATATTGCATCCTGGT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATTTAGAAATACTTACTGAAAACATCTTTCAGAATTTTGCATCCTGGT  800

seq1  AAACTTAATTGAGCTATGACAGGTTGTATAAGATCAGGTGAGAATCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAACTTAATTGAGCTATGACAGGTTGTATAAGATCAGGTGAGAATTTGAA  850

seq1  ATAGAAGCTCCTGGACAGCTCCAAAGCAAATAATCAAAGAATTTTGCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCTCCTGGACAGCTCCAAAGCAAATAATCAAAGAATTTTGCCTT  900

seq1  TGAAACTATGTCTCCCTGAATGCTATTGATCATTCCACACAGCTTCATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTATGTCTCCCTGAATGCTATTGATCATTCCACACAGCTTCATGT  950

seq1  AAGTAATGGAAATGAACTGGTTTAACGATTTCTATTGAATTCCCAATATG  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTAATGGAAATGAACTGGTTTAACGATTTCTAATGAATTCCCAATATG  1000

seq1  TCCTGGCAGTTGAGACATTAACACTCTTTTTTCCTGTAACATTTTTTTAA  1050
      |||| |||| ||||||| |||||||||||||||||||||||   ||||||
seq2  TCCT-GCAG-TGAGACA-TAACACTCTTTTTTCCTGTAACA---TTTTAA  1044

seq1  CTGTTTAGTGTGTCTGCACTGATTCATCATTAGAATTGGTTGCAAGTTTT  1100
      ||| |||||||||||||  ||| ||||||| |||||  | ||| ||||| 
seq2  CTG-TTAGTGTGTCTGCCATGAATCATCATAAGAAT--GGTGC-AGTTTG  1090

seq1  GTTGTTGAGTCTCACAAAACGGTGTTTTGAGTTGTGGTAAAACCCCTCCC  1150
      |||| ||||   |||||||||| |  |||| | |||   |||||||| ||
seq2  GTTG-TGAG--CCACAAAACGGGG--TTGATTGGTG--TAAACCCCT-CC  1132

seq1  CTTATCCTCTTGTCTTCCTCAT-CCACAAGTTCTCACCTAAAACATTAAC  1199
      ||||| |||| ||| ||  ||| ||||||| |||||||||||||  ||||
seq2  CTTAT-CTCTGGTC-TCTCCATCCCACAAG-TCTCACCTAAAAC--TAAC  1177

seq1  TGTGATTAGCCCCACCTCCTCCTA  1223
      || |||  |  |||||| ||||||
seq2  TG-GAT--GATCCACCT-CTCCTA  1197