BAC Information

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BAC

Clone NameB6Ng01-152D04
Chromosome2 (Build37)
Map Location 67,404,761 - 67,555,984
singlet/doubletdoublet
Overlap geneLOC621171
Upstream geneScn9a, Scn7a, LOC383707, LOC100039540, Gm1322, Cmya3
Downstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152D04.bB6Ng01-152D04.g
ACCDH947831DH947832
length1,2371,099
definitionDH947831|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D04, 5' end.DH947832|Mus musculus domesticus DNA, BAC clone: B6Ng01-152D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,554,747 - 67,555,984)(67,404,761 - 67,405,868)
sequence
gaattcaacaacacaggctgacctccttataattattaatattccttctt
cctcaccgatgctaatgatggtaatttatacaacgtttgaatatcgagga
gttttcatctcttcttttgctttcagaggccccattcaatttactaggtt
ttgagatactagtaccttgtttgctagtcaaagatagatgtagtgggttc
ttgcaaggcagaaaatgatttaattatgtaaagaccaagtggcagagaat
cagattatcctcttttaatagacaatctcgtgcagtcctgagaaatgaca
agggccccgaatggttttattacatttgttcctttagctcaggaagtttg
agtcagtagtaaggagcatggggaataaatgtcctatactactgactttc
caatttcatcgtgcaggccaatcatttgtctgagctatcccaaaccagtt
cttgacagcaggtgctaaattctcagccatgctctgagagactcattaat
gatagccaattttgaacactaaaccactcaattttaaaatgaattttttt
tgaaaataggcaactaaaacagcatatgttaattatttccaattttataa
atgccttcaaagtgatttgcattgttgtggatttacattgagagttgaaa
tatgacacaatagtgagtgtattgtatatgttgcaaaatatatttttata
aaaggatatactgagatcttgacatctatgctaggctgggttattgactc
aatggaaattggaaaaccctctaatatggaaaatcttggtcccagacaga
gttgttaaacatttgttttgcaacctggtaaaatatgtaagttccttaat
taataataaaaatgcataagggcttattacattgcattattgaagtaaaa
catcaatgagggaatttttaagtatgcaaacaaaagaatcagtctgtgtg
aacacaaggacaatggcagctcctatgtctgagctccacacgtaaagcac
actggaagcagaagtgagcagagcctaagatgtgggtggccatcacacag
acgacatattgcatgtggactcagaagacaccgagaggaaggactggtag
aatacttgaagttcaatgggctaaaactttgcaatttaaaaaagatggtt
agtcagggaatgccaggtaaccacaagggatcctgtgtgtttaccgaata
ttcatgtgcaaaggggtaaaacagacacatagtgaac
gaattccactccagaggactacgcctttgagctaaggtggtcgcaactgg
acaaatgggcagaggtggagtggtgctagtgcggacattggaggaatgtc
ctggagcaggcacttcctccctcgcagccctgacaggtgtgtcatcgtgt
ttgggactggtgtgtcctgggacagatactgggagagcggctgcgcagtc
agaaacttcaagcctgctggggtctgggctaccagacttggaacacgtta
attcaaagggaaccaggtttttatatccagcttcttccaggacatatgct
gatttttgtttttgttctttttgtttttcttacatgttccgttttgtaaa
gccatttcaagttccacttacactgcaacctttccgcagaagaccaatta
tgctctgctatttctgagtagtgctctcaggctgagtctagagctcgctg
ctcaggacagtgattcccccatccctgtataggacgcacaaacttaacgt
tagagacttttctctgggatctattgtctccgtaaggatctctcctttcg
aaacttcatgagatatttcagcaccaaggcactttcccccctctggctca
gcccgggaaagactgtgaccagagatgggattgcaggaagctgtagaggt
ggggagggcagctcccctgcctggcagggttgggaaaaccaaaaactggc
tcaacacaggggatctgggatcttgaactgcctacaccaatttcccttgt
ttgaagctgggttatctgttggggaatctaatggggattctgtttgtccg
accactggacaaattttcatagaccaccaccaccacaacaacaataacac
atgccagagtgaaaaatcagcttttgcttgggctttcttcctggtttgct
tgaatagtgaaaacgaaaagtatggcaccccagaggatagtgtgggcagc
aaggaggatctgtgcaaaaccccatcttgtatttgcaaccctagctatgg
taattctaaaagaagatgacactttcgataagaggtagcgggtatttatt
tccgaagcttatagaattgctactgaaaatttgtttttacagtcatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_67554747_67555984
seq2: B6Ng01-152D04.b_45_1281 (reverse)

seq1  GTTCACTA---GTCTGTTTTTACCCTTTGCA-TGGAATATTCGGTTAAAC  46
      ||||||||   |||||||||  |||||||||   |||||||||| |||||
seq2  GTTCACTATGTGTCTGTTTTACCCCTTTGCACATGAATATTCGG-TAAAC  49

seq1  A-ACAGGGATCCC-TGTGAGTTTCCCTGCATT-CCTGACTTACCATCTTT  93
      | ||| ||||||| |||| ||| ||  ||||| ||||||| |||||||||
seq2  ACACA-GGATCCCTTGTG-GTTACCTGGCATTCCCTGACTAACCATCTTT  97

seq1  TTCTAAATTTGCAAAGTTTTTAGCCATTGTAACTTCAAGTATTCTACCAG  143
      || |||| ||||||||||||   |||||| ||||||||||||||||||| 
seq2  TT-TAAA-TTGCAAAGTTTTAGCCCATTG-AACTTCAAGTATTCTACCA-  143

seq1  GTCCTTCCTCTCGGTTGTCTTCTGAGTTCCACAATGC-ATATGTCGTCTG  192
      |||||||||||||| ||||||||||| ||||| |||| ||||||||||||
seq2  GTCCTTCCTCTCGG-TGTCTTCTGAG-TCCAC-ATGCAATATGTCGTCTG  190

seq1  TGTGATGCCCACCCACATCTTAGGCTCTGCTCACTTCTGCTTCCAGTGTG  242
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGCCACCCACATCTTAGGCTCTGCTCACTTCTGCTTCCAGTGTG  240

seq1  CTTTACGTGTGGAGCCTCAGACATAGGAGCTGCCATTGT-CTTGTGTTCA  291
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CTTTACGTGTGGAG-CTCAGACATAGGAGCTGCCATTGTCCTTGTGTTCA  289

seq1  CACAGACTGATTCTTTTGTTTGCATACTTAAAAATTCCCTCATTGATGTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGATTCTTTTGTTTGCATACTTAAAAATTCCCTCATTGATGTT  339

seq1  TTACTTCAATAATGCAATGT-ATAAGCCCTTATGCATTTTTATTATTAAT  390
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTACTTCAATAATGCAATGTAATAAGCCCTTATGCATTTTTATTATTAAT  389

seq1  TAAGGAACTTACATATTTTACCAGGTTGCAAAACAAATGTTTAACAACTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACTTACATATTTTACCAGGTTGCAAAACAAATGTTTAACAACTC  439

seq1  TGTCTGGGACCAAGATTTTCCATATTAGAGGGTTTTCCAATTTCCATTGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGGACCAAGATTTTCCATATTAGAGGGTTTTCCAATTTCCATTGA  489

seq1  GTCAATAACCCAGCCTAGCATAGATGTCAAGATCTCAGTATATCCTTTTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAACCCAGCCTAGCATAGATGTCAAGATCTCAGTATATCCTTTTA  539

seq1  TAAAAATATATTTTGCAACATATACAATACACTCACTATTGTGTCATATT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATATTTTGCAACATATACAATACACTCACTATTGTGTCATATT  589

seq1  TCAACTCTCAATGTAAATCCACAACAATGCAAATCACTTTGAAGGCATTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTCAATGTAAATCCACAACAATGCAAATCACTTTGAAGGCATTT  639

seq1  ATAAAATTGGAAATAATTAACATATGCTGTTTTAGTTGCCTATTTTCAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTGGAAATAATTAACATATGCTGTTTTAGTTGCCTATTTTCAAA  689

seq1  AAAAATTCATTTTAAAATTGAGTGGTTTAGTGTTCAAAATTGGCTATCAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTCATTTTAAAATTGAGTGGTTTAGTGTTCAAAATTGGCTATCAT  739

seq1  TAATGAGTCTCTCAGAGCATGGCTGAGAATTTAGCACCTGCTGTCAAGAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGTCTCTCAGAGCATGGCTGAGAATTTAGCACCTGCTGTCAAGAA  789

seq1  CTGGTTTGGGATAGCTCAGACAAATGATTGGCCTGCACGATGAAATTGGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGGGATAGCTCAGACAAATGATTGGCCTGCACGATGAAATTGGA  839

seq1  AAGTCAGTAGTATAGGACATTTATTCCCCATGCTCCTTACTACTGACTCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTAGTATAGGACATTTATTCCCCATGCTCCTTACTACTGACTCA  889

seq1  AACTTCCTGAGCTAAAGGAACAAATGTAATAAAACCATTCGGGGCCCTTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTGAGCTAAAGGAACAAATGTAATAAAACCATTCGGGGCCCTTG  939

seq1  TCATTTCTCAGGACTGCACGAGATTGTCTATTAAAAGAGGATAATCTGAT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCAGGACTGCACGAGATTGTCTATTAAAAGAGGATAATCTGAT  989

seq1  TCTCTGCCACTTGGTCTTTACATAATTAAATCATTTTCTGCCTTGCAAGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCACTTGGTCTTTACATAATTAAATCATTTTCTGCCTTGCAAGA  1039

seq1  ACCCACTACATCTATCTTTGACTAGCAAACAAGGTACTAGTATCTCAAAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTACATCTATCTTTGACTAGCAAACAAGGTACTAGTATCTCAAAA  1089

seq1  CCTAGTAAATTGAATGGGGCCTCTGAAAGCAAAAGAAGAGATGAAAACTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTAAATTGAATGGGGCCTCTGAAAGCAAAAGAAGAGATGAAAACTC  1139

seq1  CTCGATATTCAAACGTTGTATAAATTACCATCATTAGCATCGGTGAGGAA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATATTCAAACGTTGTATAAATTACCATCATTAGCATCGGTGAGGAA  1189

seq1  GAAGGAATATTAATAATTATAAGGAGGTCAGCCTGTGTTGTTGAATTC  1238
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATATTAATAATTATAAGGAGGTCAGCCTGTGTTGTTGAATTC  1237

seq1: chr2_67404761_67405868
seq2: B6Ng01-152D04.g_68_1166

seq1  GAATTCCACTCCAGAGGACTACGCCTTTGAGCTAAGGTGGTCGCAACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCAGAGGACTACGCCTTTGAGCTAAGGTGGTCGCAACTGG  50

seq1  ACAAATGGGCAGAGGTGGAGTGGTGCTAGTGCGGACATTGGAGGAATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGGCAGAGGTGGAGTGGTGCTAGTGCGGACATTGGAGGAATGTC  100

seq1  CTGGAGCAGGCACTTCCTCCCTCGCAGCCCTGACAGGTGTGTCATCGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCAGGCACTTCCTCCCTCGCAGCCCTGACAGGTGTGTCATCGTGT  150

seq1  TTGGGACTGGTGTGTCCTGGGACAGATACTGGGAGAGCGGCTGCGCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACTGGTGTGTCCTGGGACAGATACTGGGAGAGCGGCTGCGCAGTC  200

seq1  AGAAACTTCAAGCCTGCTGGGGTCTGGGCTACCAGACTTGGAACACGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTCAAGCCTGCTGGGGTCTGGGCTACCAGACTTGGAACACGTTA  250

seq1  ATTCAAAGGGAACCAGGTTTTTATATCCAGCTTCTTCCAGGACATATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGGGAACCAGGTTTTTATATCCAGCTTCTTCCAGGACATATGCT  300

seq1  GATTTTTGTTTTTGTTCTTTTTGTTTTTCTTACATGTTCCGTTTTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTTTTTGTTCTTTTTGTTTTTCTTACATGTTCCGTTTTGTAAA  350

seq1  GCCATTTCAAGTTCCACTTACACTGCAACCTTTCCGCAGAAGACCAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCAAGTTCCACTTACACTGCAACCTTTCCGCAGAAGACCAATTA  400

seq1  TGCTCTGCTATTTCTGAGTAGTGCTCTCAGGCTGAGTCTAGAGCTCGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCTATTTCTGAGTAGTGCTCTCAGGCTGAGTCTAGAGCTCGCTG  450

seq1  CTCAGGACAGTGATTCCCCCATCCCTGTATAGGACGCACAAACTTAACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACAGTGATTCCCCCATCCCTGTATAGGACGCACAAACTTAACGT  500

seq1  TAGAGACTTTTCTCTGGGATCTATTGTCTCCGTAAGGATCTCTCCTTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTTTTCTCTGGGATCTATTGTCTCCGTAAGGATCTCTCCTTTCG  550

seq1  AAACTTCATGAGATATTTCAGCACCAAGGCACTTTCCCCTCTCTGGCTCA  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAACTTCATGAGATATTTCAGCACCAAGGCACTTTCCCCCCTCTGGCTCA  600

seq1  GCCCGGGAAAGACTGTGACCAGAGATGGGATTGCAGGAAGCTGTAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGAAAGACTGTGACCAGAGATGGGATTGCAGGAAGCTGTAGAGGT  650

seq1  GGGGAGGGCAGCTCCCCTGCCTGGCAGGGTTGGGAAAACCAAAAACTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGCAGCTCCCCTGCCTGGCAGGGTTGGGAAAACCAAAAACTGGC  700

seq1  TCAACACA-GGGATCTGGGATCTTGAACTGCCTACACCAATTTCCC-TGT  748
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TCAACACAGGGGATCTGGGATCTTGAACTGCCTACACCAATTTCCCTTGT  750

seq1  TTGAAGCTGGGTTATCTGTTGGGGAATCTAATGGGGATTCTG-TTGTCCG  797
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGAAGCTGGGTTATCTGTTGGGGAATCTAATGGGGATTCTGTTTGTCCG  800

seq1  ACCACTGGACAAA-TTTCATAGACCACCACCACCACAACAACAATAACAA  846
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  ACCACTGGACAAATTTTCATAGACCACCACCACCACAACAACAATAAC-A  849

seq1  CATGCCAGAGTGAGAAA-CAGC-TTTGCTTGGGC-TCCTTTCTGGTTTGC  893
      ||||||||||||| ||| |||| ||||||||||| | ||| |||||||||
seq2  CATGCCAGAGTGAAAAATCAGCTTTTGCTTGGGCTTTCTTCCTGGTTTGC  899

seq1  TTGAATAGTGAAAACG-AAAGTATGGCACCCCAGAGGAATAGTGTGGGCA  942
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TTGAATAGTGAAAACGAAAAGTATGGCACCCCAGAGG-ATAGTGTGGGCA  948

seq1  GCAAGGAGGGATCTGTGCAAAACCCCCATCTTTGTAGTTTGCAAAACCTA  992
      ||||||| |||||||||||||| ||||||| ||||| ||||| || ||||
seq2  GCAAGGA-GGATCTGTGCAAAA-CCCCATC-TTGTA-TTTGC-AACCCTA  993

seq1  GCTAT-GTTATTCTAAAAAGAGATGAGCAACTTCCAATAAAGAGGTAGCG  1041
      ||||| || |||||||||  ||||||   |||| | || |||||||||||
seq2  GCTATGGTAATTCTAAAAGAAGATGA--CACTTTCGAT-AAGAGGTAGCG  1040

seq1  GTGTTAATTTTATTTCTGAAGCTTTATTAGAAATTGCTACTGAATATTTG  1091
      | ||    |||||||| |||||||   ||| ||||||||||||| |||||
seq2  G-GT---ATTTATTTCCGAAGCTT--ATAG-AATTGCTACTGAAAATTTG  1083

seq1  TTTTTAACAGTCATGAT  1108
      ||||| |||||||||||
seq2  TTTTT-ACAGTCATGAT  1099