BAC Information

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BAC

Clone NameB6Ng01-152K14
Chromosome2 (Build37)
Map Location 74,554,813 - 74,706,279
singlet/doubletdoublet
Overlap geneHoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2
Upstream geneAtf2, Atp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik
Downstream geneLOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152K14.bB6Ng01-152K14.g
ACCDH948182DH948183
length1,1041,117
definitionDH948182|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K14, 5' end.DH948183|Mus musculus domesticus DNA, BAC clone: B6Ng01-152K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,554,813 - 74,555,919)(74,705,158 - 74,706,279)
sequence
gaattcaaatgtcaagaagcagtgtccaggcatcctgaaaacactctccc
caaggcaatgaagatatgtacataggttggagagccatgggttaagggtg
tctcctgcttagctctttattctcctggtcctgagtttcttctttgtcta
cactgggcatacccaaagcccctggagttacaatcatgactatctgggtt
ttgtttttgtttttgtgttttttttttttttttttagttaccacactata
ggtgagtaatttcttccattttatgcatgaaattacggggtctatgcatt
cctcacgctgggttttgcaagtgccaagagcaggttctaaactaagttca
ggcttaattgggttcaaattcaaaccctacacttgcttgatgcttggcct
tcagtgagcaggacaatgtctttgagctcatttccttctttgaaagtagg
aatagaaagagtatcatcaagagttcttatgaggatcttacttttttaga
gacaggatgtcattatgttaccagactggccttggacttatggcaatcct
tatggcagtccccagggtaccatggggtgtaagcccaccacacatgtctt
agtttttacttccatgttacttttatattgagcacaatcctaactgtgtt
gagtatacttattagctaagtacttaaaacagtgcttcggcacatataca
tttaacaccattaatggtattggccccgctttctcataagtaagaccttg
gattttccaggctaagaaactagcttattttctcactaaatccttgagtt
ctatacaggataaaagagacctaaactggacatgatggttcatgcctata
gtccccacacttaggaagcggcagcagaaggatcaacatttgaatttgag
ccagcctaggcttcataatggagttcaaacccagcctagactacttagca
agtccctatctcaatgaaacaaagcataaaataatcttggtcaggtgtca
ttgggcaatggcctcttcagatctcagtgtctagtacccaggagggaaag
ctccttggtcttttacagggtggcctaccatccagtaagtgtggttggac
ttct
gaattcatttccagaaagcttttttgaacaaaattattgtgtataaaagt
atacctaatatttactcgctactaagtagtattaactgtcattatataaa
tgcatttcaatagataaaattatagaatgaattatttcataaaggagaaa
acaaaatgatcagtagagagccctgtatttttcaggcataaagcttaaaa
acaaaagaaataccaagacaagtgctacttataaaatgggcaaagatgaa
aaaaaaaaaagccaatgttagtaaagacatcaaaggggaaaagagatgtc
aaaactcctctaagacactatagaaatggagagacacataaaatggtata
gcttttatttagttcaatctgacaatctgctctatattattaaaaggtat
atgccaaagcattatccagttatcccagtaacactttcaggaattcatct
tcttgtttgctatgtttgagtcagggtcttaatatatagacctggctagt
ctggaactcactatgtagaacaatctggcctcaaattcacagagatctga
cttctaagtcctggaattaaaggcatggagaaccatgcccatcaaggaat
tatcttaatgaaacaagtatacagaagtctatgtaaaagaaaatttattt
taatacaaaataaattgtctatatccaagtgcccactggaaaactatata
atgcatgcaatacaacagaaaacaatttaacaatttttaaagatgtatat
ctatgtatagtcattaatgtagaatcagttttaaatatattggcaacttt
aaaggacaaaataacacataatagtatgatttggttttctagctatataa
agtccagaaggatgtttctataaacattaatgaaagtgcttcttactgtt
aaatctaattaagccaatgaacagaaccactcaagtaggtacttaatatc
ttcaacttcaaacagatcctgtatcttccttctcaagatcaacagatctt
taataacttaaaaagcctcatttgacagaaatccacatacttctttatta
gaaaaacactgtcaatttcctaaaaatcaagccacatcccttgcaatggg
ttatagtatgaagaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_74554813_74555919
seq2: B6Ng01-152K14.b_44_1147

seq1  GAATTCAAATGTCAAGAAGCAGTGTCCAGGCATCCTGAAAACACTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTCAAGAAGCAGTGTCCAGGCATCCTGAAAACACTCTCCC  50

seq1  CAAGGCAATGAAGATATGTACATAGGTTGGAGAGCCATGGGTTAAGGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAATGAAGATATGTACATAGGTTGGAGAGCCATGGGTTAAGGGTG  100

seq1  TCTCCTGCTTAGCTCTTTATTCTCCTGGTCCTGAGTTTCTTCTTTGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCTTAGCTCTTTATTCTCCTGGTCCTGAGTTTCTTCTTTGTCTA  150

seq1  CACTGGGCATACCCAAAGCCCCTGGAGTTACAATCATGACTATCTGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCATACCCAAAGCCCCTGGAGTTACAATCATGACTATCTGGGTT  200

seq1  TTGTTTTTGTTTTTGTGTTTTTTTTTTTTTTTTTTAGTTACCACACTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGTTTTTGTGTTTTTTTTTTTTTTTTTTAGTTACCACACTATA  250

seq1  GGTGAGTAATTTCTTCCATTTTATGCATGAAATTACGGGGTCTATGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTAATTTCTTCCATTTTATGCATGAAATTACGGGGTCTATGCATT  300

seq1  CCTCACGCTGGGTTTTGCAAGTGCCAAGAGCAGGTTCTAAACTAAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACGCTGGGTTTTGCAAGTGCCAAGAGCAGGTTCTAAACTAAGTTCA  350

seq1  GGCTTAATTGGGTTCAAATTCAAACCCTACACTTGCTTGATGCTTGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAATTGGGTTCAAATTCAAACCCTACACTTGCTTGATGCTTGGCCT  400

seq1  TCAGTGAGCAGGACAATGTCTTTGAGCTCATTTCCTTCTTTGAAAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGCAGGACAATGTCTTTGAGCTCATTTCCTTCTTTGAAAGTAGG  450

seq1  AATAGAAAGAGTATCATCAAGAGTTCTTATGAGGATCTTACTTTTTTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGAGTATCATCAAGAGTTCTTATGAGGATCTTACTTTTTTAGA  500

seq1  GACAGGATGTCATTATGTTACCAGACTGGCCTTGGACTTATGGCAATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATGTCATTATGTTACCAGACTGGCCTTGGACTTATGGCAATCCT  550

seq1  TATGGCAGTCCCCAGGGTACCATGGGGTGTAAGCCCACCACACATGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAGTCCCCAGGGTACCATGGGGTGTAAGCCCACCACACATGTCTT  600

seq1  AGTTTTTACTTCCATGTTACTTTTATATTGAGCACAATCCTAACTGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTACTTCCATGTTACTTTTATATTGAGCACAATCCTAACTGTGTT  650

seq1  GAGTATACTTATTAGCTAAGTACTTAAAACAGTGCTTCGGCACATAAACA  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGTATACTTATTAGCTAAGTACTTAAAACAGTGCTTCGGCACATATACA  700

seq1  TTTAACACCATTAATGGTATTGGCCCCGCTTTCTCATAAGTAAGACCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACACCATTAATGGTATTGGCCCCGCTTTCTCATAAGTAAGACCTTG  750

seq1  GATTTTCCAGGCAAAAGAAACTAGCTTATTTTCTCACTAAATCCTTGAGT  800
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GATTTTCCAGGC-TAAGAAACTAGCTTATTTTCTCACTAAATCCTTGAGT  799

seq1  TCTATACAGGATAAAAGAGACCTAAACTGGACATGATGGTTCATGCCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAGGATAAAAGAGACCTAAACTGGACATGATGGTTCATGCCTAT  849

seq1  AGTCCCCACACTTAGGAAGCGGCAGCAGAAGGATCAACATTTGAATTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCACACTTAGGAAGCGGCAGCAGAAGGATCAACATTTGAATTTGA  899

seq1  GGCCAGCCTAGGCTTCAT-ATGGAGTTCAAACCCAGCCTAGACTACTTAG  949
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -GCCAGCCTAGGCTTCATAATGGAGTTCAAACCCAGCCTAGACTACTTAG  948

seq1  CAAGTCCCTATCTCAATGAAACAAAGCAATAAAATAAATCTTGGTCAGGT  999
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CAAGTCCCTATCTCAATGAAACAAAGC-ATAAAAT-AATCTTGGTCAGGT  996

seq1  GTCATT-GGCAATGGCCTC-TCAGATCTCAGTGTCTAGTACCCAGGA-GG  1046
      |||||| |||||||||||| ||||||||||||||||||||||||||| ||
seq2  GTCATTGGGCAATGGCCTCTTCAGATCTCAGTGTCTAGTACCCAGGAGGG  1046

seq1  AAAGCTCTCTTGGCTCTTTAACA-GGTGGCCTTACACTCCAGTAGGTGTG  1095
      ||||||| ||||| ||||| ||| ||||||| |||  ||||||| |||||
seq2  AAAGCTC-CTTGG-TCTTTTACAGGGTGGCC-TACCATCCAGTAAGTGTG  1093

seq1  TTTGGAACTTCT  1107
       |||| ||||||
seq2  GTTGG-ACTTCT  1104

seq1: chr2_74705158_74706279
seq2: B6Ng01-152K14.g_68_1184 (reverse)

seq1  GCTTCTTCATACTATAAACCAATAGCAA-GGATGTTGGCTGATTTTTA-G  48
      ||||||||||||||| |||| || |||| |||||| |  ||||||||| |
seq2  GCTTCTTCATACTAT-AACCCATTGCAAGGGATGTGGCTTGATTTTTAGG  49

seq1  AAAATGGCAGGTGTTTTCTAATAAAG-AGTATGTGAATTTCTGTCAAATG  97
      ||| || |||   ||||||||||||| |||||||| ||||||||||||||
seq2  AAATTGACAGTGTTTTTCTAATAAAGAAGTATGTGGATTTCTGTCAAATG  99

seq1  GAGC-TTTTAAGTTATTAAAGATCTGGTTGATCTTTGAGAAGGGAGATAC  146
        || |||||||||||||||||||| ||||||| ||||||||| ||||||
seq2  AGGCTTTTTAAGTTATTAAAGATCT-GTTGATC-TTGAGAAGGAAGATAC  147

seq1  AGGATCTGTTTTGAAGTTGAAGGTATTAAGTTACCTACTTGAGTGGTTCT  196
      |||||||| ||||||||||||| ||||||| |||||||||||||||||||
seq2  AGGATCTG-TTTGAAGTTGAAGATATTAAG-TACCTACTTGAGTGGTTCT  195

seq1  GTTCATTGGCTTAATTTAGATTTTAACAGTTAAGAAGCACTTTCATTAAT  246
      |||||||||||||| ||||| |||||||| ||||||||||||||||||||
seq2  GTTCATTGGCTTAA-TTAGA-TTTAACAG-TAAGAAGCACTTTCATTAAT  242

seq1  GTTTATAGAAACATTCTTCTGGACTTTTATATAGCTAGAAAACCAGATCA  296
      |||||||||||||| ||||||||| |||||||||||||||||||| ||||
seq2  GTTTATAGAAACATCCTTCTGGAC-TTTATATAGCTAGAAAACCAAATCA  291

seq1  TACTATTATGTGTTATTTTGTCCTTTAAAGTTGCCAATATATTTAAAACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATGTGTTATTTTGTCCTTTAAAGTTGCCAATATATTTAAAACT  341

seq1  GATTCTACATTAATGACTATACATAGATATACATCTTTAAAAATTGTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTACATTAATGACTATACATAGATATACATCTTTAAAAATTGTTAA  391

seq1  ATTGTTTTCTGTTGTATTGCATGCATTATATAGTTTTCCAGTGGGCACTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTCTGTTGTATTGCATGCATTATATAGTTTTCCAGTGGGCACTT  441

seq1  GGATATAGACAATTTATTTTGTATTAAAATAAATTTTCTTTTACATAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGACAATTTATTTTGTATTAAAATAAATTTTCTTTTACATAGAC  491

seq1  TTCTGTATACTTGTTTCATTAAGATAATTCCTTGATGGGCATGGTTCTCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATACTTGTTTCATTAAGATAATTCCTTGATGGGCATGGTTCTCC  541

seq1  ATGCCTTTAATTCCAGGACTTAGAAGTCAGATCTCTGTGAATTTGAGGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAATTCCAGGACTTAGAAGTCAGATCTCTGTGAATTTGAGGCC  591

seq1  AGATTGTTCTACATAGTGAGTTCCAGACTAGCCAGGTCTATATATTAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTCTACATAGTGAGTTCCAGACTAGCCAGGTCTATATATTAAGA  641

seq1  CCCTGACTCAAACATAGCAAACAAGAAGATGAATTCCTGAAAGTGTTACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTCAAACATAGCAAACAAGAAGATGAATTCCTGAAAGTGTTACT  691

seq1  GGGATAACTGGATAATGCTTTGGCATATACCTTTTAATAATATAGAGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAACTGGATAATGCTTTGGCATATACCTTTTAATAATATAGAGCAG  741

seq1  ATTGTCAGATTGAACTAAATAAAAGCTATACCATTTTATGTGTCTCTCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAGATTGAACTAAATAAAAGCTATACCATTTTATGTGTCTCTCCA  791

seq1  TTTCTATAGTGTCTTAGAGGAGTTTTGACATCTCTTTTCCCCTTTGATGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAGTGTCTTAGAGGAGTTTTGACATCTCTTTTCCCCTTTGATGT  841

seq1  CTTTACTAACATTGGCTTTTTTTTTTTTCATCTTTGCCCATTTTATAAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTAACATTGGCTTTTTTTTTTTTCATCTTTGCCCATTTTATAAGT  891

seq1  AGCACTTGTCTTGGTATTTCTTTTGTTTTTAAGCTTTATGCCTGAAAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGTCTTGGTATTTCTTTTGTTTTTAAGCTTTATGCCTGAAAAAT  941

seq1  ACAGGGCTCTCTACTGATCATTTTGTTTTCTCCTTTATGAAATAATTCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTCTCTACTGATCATTTTGTTTTCTCCTTTATGAAATAATTCAT  991

seq1  TCTATAATTTTATCTATTGAAATGCATTTATATAATGACAGTTAATACTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATTTTATCTATTGAAATGCATTTATATAATGACAGTTAATACTA  1041

seq1  CTTAGTAGCGAGTAAATATTAGGTATACTTTTATACACAATAATTTTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAGCGAGTAAATATTAGGTATACTTTTATACACAATAATTTTGTT  1091

seq1  CAAAAAAGCTTTCTGGAAATGAATTC  1122
      ||||||||||||||||||||||||||
seq2  CAAAAAAGCTTTCTGGAAATGAATTC  1117